Protein–RNA interactions for Protein: P61025

Cks1b, Cyclin-dependent kinases regulatory subunit 1, mousemouse

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cks1bP61025 Gm25239-201ENSMUST00000174915 86 ntBASIC23.08■■□□□ 1.29
Cks1bP61025 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Cks1bP61025 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cks1bP61025 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cks1bP61025 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cks1bP61025 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Cks1bP61025 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Cks1bP61025 Psd-208ENSMUST00000224556 2034 ntBASIC21.52■■□□□ 1.04
Cks1bP61025 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cks1bP61025 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Cks1bP61025 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Cks1bP61025 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cks1bP61025 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cks1bP61025 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cks1bP61025 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cks1bP61025 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cks1bP61025 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cks1bP61025 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cks1bP61025 Gm15042-201ENSMUST00000120212 883 ntBASIC20.82■□□□□ 0.92
Cks1bP61025 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cks1bP61025 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cks1bP61025 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cks1bP61025 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cks1bP61025 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cks1bP61025 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.59■□□□□ 0.89
Cks1bP61025 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cks1bP61025 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cks1bP61025 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cks1bP61025 Gm15045-201ENSMUST00000117359 883 ntBASIC20.37■□□□□ 0.85
Cks1bP61025 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cks1bP61025 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cks1bP61025 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Cks1bP61025 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cks1bP61025 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cks1bP61025 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cks1bP61025 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cks1bP61025 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cks1bP61025 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Cks1bP61025 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cks1bP61025 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cks1bP61025 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Cks1bP61025 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cks1bP61025 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cks1bP61025 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cks1bP61025 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cks1bP61025 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cks1bP61025 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Cks1bP61025 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.95■□□□□ 0.78
Cks1bP61025 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.94■□□□□ 0.78
Cks1bP61025 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19.93■□□□□ 0.78
Cks1bP61025 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19.9■□□□□ 0.78
Cks1bP61025 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cks1bP61025 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cks1bP61025 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cks1bP61025 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.72■□□□□ 0.75
Cks1bP61025 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cks1bP61025 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.67■□□□□ 0.74
Cks1bP61025 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cks1bP61025 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cks1bP61025 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.65■□□□□ 0.74
Cks1bP61025 Gm24109-201ENSMUST00000175489 103 ntBASIC19.64■□□□□ 0.73
Cks1bP61025 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cks1bP61025 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cks1bP61025 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.59■□□□□ 0.73
Cks1bP61025 Zxda-201ENSMUST00000117281 2621 ntBASIC19.58■□□□□ 0.72
Cks1bP61025 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cks1bP61025 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cks1bP61025 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cks1bP61025 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cks1bP61025 Gm23366-201ENSMUST00000175022 89 ntBASIC19.44■□□□□ 0.7
Cks1bP61025 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cks1bP61025 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cks1bP61025 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19.43■□□□□ 0.7
Cks1bP61025 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cks1bP61025 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cks1bP61025 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Cks1bP61025 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cks1bP61025 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cks1bP61025 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.33■□□□□ 0.68
Cks1bP61025 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cks1bP61025 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cks1bP61025 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cks1bP61025 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cks1bP61025 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cks1bP61025 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cks1bP61025 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cks1bP61025 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.15■□□□□ 0.66
Cks1bP61025 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Cks1bP61025 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cks1bP61025 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Cks1bP61025 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cks1bP61025 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Cks1bP61025 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.09■□□□□ 0.65
Cks1bP61025 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Cks1bP61025 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cks1bP61025 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cks1bP61025 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cks1bP61025 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Cks1bP61025 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Cks1bP61025 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms