RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	RCF2	P53721	224 aa		12.5	□□□□□ -0.41
BDF1	YLR399C	DYN3	Q04949	312 aa		12.5	□□□□□ -0.41
BDF1	YLR399C	SVF1	Q05515	481 aa		12.5	□□□□□ -0.41
BDF1	YLR399C	NTG2	Q08214	380 aa		12.5	□□□□□ -0.41
BDF1	YLR399C	SEC2	P17065	759 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	TRX1	P22217	103 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	ESS1	P22696	170 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	SPB1	P25582	841 aa	Predicted RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	SAC1	P32368	623 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	PGM1	P33401	570 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	ARC1	P46672	376 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	VTC4	P47075	721 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	GET1	P53192	235 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	HST2	P53686	357 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	YNR063W	P53749	607 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	SLT2	Q00772	484 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	ABZ2	Q03266	374 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	REH1	Q06709	432 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	YPL191C	Q08930	360 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	CTR86	P25355	563 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	NUP2	P32499	720 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	CYS4	P32582	507 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	SSE2	P32590	693 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	DOM34	P33309	386 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	TDP1	P38319	544 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	DYS1	P38791	387 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	GDH3	P39708	457 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	YMR099C	Q03161	297 aa	Known RBP	12.49	□□□□□ -0.41
BDF1	YLR399C	GPI13	Q07830	1017 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	ENT4	Q07872	247 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	LAM6	Q08001	693 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	RCN2	Q12044	265 aa		12.49	□□□□□ -0.41
BDF1	YLR399C	FKS1	P38631	1876 aa	Known RBP	12.48	□□□□□ -0.41
BDF1	YLR399C	IDI1	P15496	288 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	12.48	□□□□□ -0.41	not detected
BDF1	YLR399C	FAA2	P39518	744 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	PES4	P39684	611 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	THI7	Q05998	598 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	YCS4	Q06156	1176 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	LAP2	Q10740	671 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	HER1	Q12276	1246 aa		12.48	□□□□□ -0.41
BDF1	YLR399C	CAR1	P00812	333 aa	Known RBP	12.47	□□□□□ -0.41
BDF1	YLR399C	RPS3	P05750	240 aa	Known RBP	12.47	□□□□□ -0.41
BDF1	YLR399C	HIS3	P06633	220 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	TMT1	P32643	299 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	ECM10	P39987	644 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	REX2	P54964	269 aa	Known RBP	12.47	□□□□□ -0.41
BDF1	YLR399C	YEH2	Q07950	538 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	12.47	□□□□□ -0.41	not detected
BDF1	YLR399C	RPL6B	P05739	176 aa	Known RBP	12.47	□□□□□ -0.41
BDF1	YLR399C	RAP1	P11938	827 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	MRP13	P12686	339 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	RPC34	P32910	317 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	DUR3	P33413	735 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	PEX6	P33760	1030 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	YBR242W	P38331	238 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	VHR1	P40522	640 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	MON1	P53129	644 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	YMR111C	Q04461	462 aa	Predicted RBP	12.47	□□□□□ -0.41
BDF1	YLR399C	KAP95	Q06142	861 aa	Known RBP	12.47	□□□□□ -0.41
BDF1	YLR399C	RSB1	Q08417	382 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	AVL9	Q12500	764 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	YEL077C	Q3E7X8	1277 aa		12.47	□□□□□ -0.41
BDF1	YLR399C	KSS1	P14681	368 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	PHO81	P17442	1178 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	POL4	P25615	582 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	CCT7	P42943	550 aa	Known RBP	12.46	□□□□□ -0.41
BDF1	YLR399C	ECL1	P48235	211 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	MSE1	P48525	536 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	RTA1	P53047	317 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	TAM41	P53230	385 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	NMA111	P53920	997 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	APP1	P53933	587 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	IWR1	Q07532	353 aa	Predicted RBP	12.46	□□□□□ -0.41
BDF1	YLR399C	PMD1	P32634	1753 aa		12.46	□□□□□ -0.41
BDF1	YLR399C	IMA3	P0CW40	589 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	IMA4	P0CW41	589 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	GPA2	P10823	449 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	HMG2	P12684	1045 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	EAP1	P36041	632 aa	Known RBP	12.46	□□□□□ -0.42
BDF1	YLR399C	YBL086C	P38177	466 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	YFL012W	P43580	148 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	HSH155	P49955	971 aa	Known RBP	12.46	□□□□□ -0.42
BDF1	YLR399C	PEX8	P53248	589 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	FMP45	Q07651	309 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	BRE4	Q07660	1125 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	IMA2	Q08295	589 aa		12.46	□□□□□ -0.42
BDF1	YLR399C	DNL4	Q08387	944 aa	Predicted RBP	12.46	□□□□□ -0.42
BDF1	YLR399C	CUE5	Q08412	411 aa	Known RBP	12.46	□□□□□ -0.42
BDF1	YLR399C	PUT2	P07275	575 aa		12.45	□□□□□ -0.42
BDF1	YLR399C	SPE1	P08432	466 aa		12.45	□□□□□ -0.42
BDF1	YLR399C	VMA6	P32366	345 aa	Known RBP	12.45	□□□□□ -0.42
BDF1	YLR399C	SUV3	P32580	737 aa		12.45	□□□□□ -0.42
BDF1	YLR399C	STV1	P37296	890 aa		12.45	□□□□□ -0.42
BDF1	YLR399C	GPI1	P53306	609 aa		12.45	□□□□□ -0.42
BDF1	YLR399C	WHI4	Q07655	649 aa	Known RBP	12.45	□□□□□ -0.42
BDF1	YLR399C	FLC1	Q08967	793 aa		12.45	□□□□□ -0.42
BDF1	YLR399C	CBS2	P14905	389 aa		12.44	□□□□□ -0.42
BDF1	YLR399C	CDC42	P19073	191 aa		12.44	□□□□□ -0.42
BDF1	YLR399C	PMA2	P19657	947 aa		12.44	□□□□□ -0.42

Retrieved 100 of 5,963 RNA–protein pairs in 103.8 ms