RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W RPB2P08518 1224 aaKnown RBP6.19□□□□□ -1.42
PRP40YKL012W ABF1P14164 731 aa6.19□□□□□ -1.42
PRP40YKL012W THI80P35202 319 aa6.19□□□□□ -1.42
PRP40YKL012W NOP4P37838 685 aaKnown RBP6.19□□□□□ -1.42
PRP40YKL012W UBS1P38290 277 aa6.19□□□□□ -1.42
PRP40YKL012W SKP2P42843 763 aa6.19□□□□□ -1.42
PRP40YKL012W RNT1Q02555 471 aa6.19□□□□□ -1.42
PRP40YKL012W RCO1Q04779 684 aa6.19□□□□□ -1.42
PRP40YKL012W CRF1Q04930 467 aa6.19□□□□□ -1.42
PRP40YKL012W YDL086WQ07505 273 aa6.19□□□□□ -1.42
PRP40YKL012W MRP20P32387 263 aa6.18□□□□□ -1.42
PRP40YKL012W YHR097CP38809 366 aaKnown RBP6.18□□□□□ -1.42
PRP40YKL012W VTC2P43585 828 aa6.18□□□□□ -1.42
PRP40YKL012W IRC6P43615 237 aa6.18□□□□□ -1.42
PRP40YKL012W ARC1P46672 376 aaKnown RBP6.18□□□□□ -1.42
PRP40YKL012W TAH18Q12181 623 aa6.18□□□□□ -1.42
PRP40YKL012W ALG7P07286 448 aa6.18□□□□□ -1.42
PRP40YKL012W RPL19AP0CX82 189 aaKnown RBP6.18□□□□□ -1.42
PRP40YKL012W RPL19BP0CX83 189 aaPredicted RBP6.18□□□□□ -1.42
PRP40YKL012W SAC6P32599 642 aaKnown RBP6.18□□□□□ -1.42
PRP40YKL012W SDH8P38345 138 aa6.18□□□□□ -1.42
PRP40YKL012W MPT5P39016 859 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42not detected
PRP40YKL012W FMP10P40098 244 aa6.18□□□□□ -1.42
PRP40YKL012W TIM10P87108 93 aa6.18□□□□□ -1.42
PRP40YKL012W USV1Q12132 391 aa6.18□□□□□ -1.42
PRP40YKL012W PNO1Q99216 274 aaKnown RBP6.18□□□□□ -1.42
PRP40YKL012W OLE1P21147 510 aaKnown RBP6.17□□□□□ -1.42
PRP40YKL012W PSD1P39006 500 aa6.17□□□□□ -1.42
PRP40YKL012W PHO23P50947 330 aa6.17□□□□□ -1.42
PRP40YKL012W VPS4P52917 437 aa6.17□□□□□ -1.42
PRP40YKL012W YGR151CP53287 111 aa6.17□□□□□ -1.42
PRP40YKL012W MRPL19P53875 158 aa6.17□□□□□ -1.42
PRP40YKL012W REG1Q00816 1014 aa6.17□□□□□ -1.42
PRP40YKL012W AIM39Q08223 395 aa6.17□□□□□ -1.42
PRP40YKL012W TMA16Q08687 178 aa6.17□□□□□ -1.42
PRP40YKL012W GLT1Q12680 2145 aaKnown RBP6.17□□□□□ -1.42
PRP40YKL012W TUB2P02557 457 aaKnown RBP6.16□□□□□ -1.42
PRP40YKL012W CDC24P11433 854 aaPredicted RBP6.16□□□□□ -1.42
PRP40YKL012W SGF29P25554 259 aa6.16□□□□□ -1.42
PRP40YKL012W URK1P27515 501 aa6.16□□□□□ -1.42
PRP40YKL012W BUD16P39988 312 aa6.16□□□□□ -1.42
PRP40YKL012W ASE1P50275 885 aa6.16□□□□□ -1.42
PRP40YKL012W DIP5P53388 608 aa6.16□□□□□ -1.42
PRP40YKL012W SNF12P53628 566 aa6.16□□□□□ -1.42
PRP40YKL012W MTG1Q03151 367 aaPredicted RBP6.16□□□□□ -1.42
PRP40YKL012W TAF11Q04226 346 aa6.16□□□□□ -1.42
PRP40YKL012W SCM3Q12334 223 aa6.16□□□□□ -1.42
PRP40YKL012W PPR1P07272 904 aaPredicted RBP6.16□□□□□ -1.42
PRP40YKL012W HRR25P29295 494 aaKnown RBP6.16□□□□□ -1.42
PRP40YKL012W YBR225WP38321 900 aa6.16□□□□□ -1.42
PRP40YKL012W ARE2P53629 642 aaKnown RBP6.16□□□□□ -1.42
PRP40YKL012W YSA1Q01976 231 aa6.16□□□□□ -1.42
PRP40YKL012W YLR040CQ07988 224 aa6.16□□□□□ -1.42
PRP40YKL012W SPO16P17122 198 aa6.15□□□□□ -1.43
PRP40YKL012W ERG8P24521 451 aa6.15□□□□□ -1.43
PRP40YKL012W GEX2P36173 615 aa6.15□□□□□ -1.43
PRP40YKL012W APL3P38065 1025 aa6.15□□□□□ -1.43
PRP40YKL012W DUO1P53168 247 aaKnown RBP6.15□□□□□ -1.43
PRP40YKL012W RPS15Q01855 142 aaKnown RBP6.15□□□□□ -1.43
PRP40YKL012W MFM1Q02783 413 aa6.15□□□□□ -1.43
PRP40YKL012W UFO1Q04511 668 aa6.15□□□□□ -1.43
PRP40YKL012W YLR287CQ05881 355 aa6.15□□□□□ -1.43
PRP40YKL012W STP3Q05937 343 aa6.15□□□□□ -1.43
PRP40YKL012W VIP1Q06685 1146 aaKnown RBP6.15□□□□□ -1.43
PRP40YKL012W YBR255C-AQ3E776 120 aa6.15□□□□□ -1.43
PRP40YKL012W YOR111WQ99210 232 aa6.15□□□□□ -1.43
PRP40YKL012W VCX1Q99385 411 aa6.15□□□□□ -1.43
PRP40YKL012W PGS1P25578 521 aa6.14□□□□□ -1.43
PRP40YKL012W DEF1P35732 738 aaKnown RBP6.14□□□□□ -1.43
PRP40YKL012W TDP1P38319 544 aa6.14□□□□□ -1.43
PRP40YKL012W YJL206CP39529 758 aa6.14□□□□□ -1.43
PRP40YKL012W YIL161WP40449 235 aaKnown RBP6.14□□□□□ -1.43
PRP40YKL012W THI6P41835 540 aa6.14□□□□□ -1.43
PRP40YKL012W DAK1P54838 584 aaKnown RBP6.14□□□□□ -1.43
PRP40YKL012W NUS1Q12063 375 aa6.14□□□□□ -1.43
PRP40YKL012W HUA2Q12134 243 aa6.14□□□□□ -1.43
PRP40YKL012W RKI1Q12189 258 aa6.14□□□□□ -1.43
PRP40YKL012W ERG27Q12452 347 aaKnown RBP6.14□□□□□ -1.43
PRP40YKL012W RNQ1P25367 405 aa6.13□□□□□ -1.43
PRP40YKL012W CDC5P32562 705 aa6.13□□□□□ -1.43
PRP40YKL012W CCL1P37366 393 aa6.13□□□□□ -1.43
PRP40YKL012W RKM3P38222 552 aa6.13□□□□□ -1.43
PRP40YKL012W NMA2P53204 395 aa6.13□□□□□ -1.43
PRP40YKL012W ATG4P53867 494 aa6.13□□□□□ -1.43
PRP40YKL012W RIA1P53893 1110 aa6.13□□□□□ -1.43
PRP40YKL012W MFB1Q04922 465 aa6.13□□□□□ -1.43
PRP40YKL012W ENT4Q07872 247 aa6.13□□□□□ -1.43
PRP40YKL012W NTO1Q12311 748 aa6.13□□□□□ -1.43
PRP40YKL012W HSH49Q99181 213 aaPredicted RBP6.13□□□□□ -1.43
PRP40YKL012W HCM1P25364 564 aa6.13□□□□□ -1.43
PRP40YKL012W PPS1P38148 807 aa6.13□□□□□ -1.43
PRP40YKL012W KSP1P38691 1029 aaKnown RBP6.13□□□□□ -1.43
PRP40YKL012W NPR2P39923 615 aa6.13□□□□□ -1.43
PRP40YKL012W RMD8P43620 662 aa6.13□□□□□ -1.43
PRP40YKL012W YIP4P53093 235 aa6.13□□□□□ -1.43
PRP40YKL012W BUD17P53727 317 aa6.13□□□□□ -1.43
PRP40YKL012W ATG23Q06671 453 aa6.13□□□□□ -1.43
PRP40YKL012W YPL216WQ08964 1102 aa6.13□□□□□ -1.43
PRP40YKL012W SWT1Q12104 458 aa6.13□□□□□ -1.43
PRP40YKL012W SEC53P07283 254 aaKnown RBP6.12□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms