RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	BOS1	P25385	244 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	NGG1	P32494	702 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	SUA5	P32579	426 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	FZO1	P38297	855 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	YBR238C	P38330	731 aa	Known RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	TDA3	P38758	523 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	BDH2	P39713	417 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	UTP25	P40498	721 aa	Known RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	SET4	P42948	560 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	QRI1	P43123	477 aa	Known RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	LSM1	P47017	172 aa	Known RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	MPS3	P47069	682 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	YGR053C	P53234	283 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	SMA1	Q02651	245 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	VPS64	Q03944	604 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	GTB1	Q04924	702 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	RSA3	Q05942	220 aa	Known RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	THI3	Q07471	609 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	ESA1	Q08649	445 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	SOG2	Q08817	791 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	DDC1	Q08949	612 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	YPL225W	Q08971	146 aa	Known RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	HER1	Q12276	1246 aa		4.97	□□□□□ -1.61
SEC9	YGR009C	PFK27	Q12471	397 aa	Predicted RBP	4.97	□□□□□ -1.61
SEC9	YGR009C	GAL7	P08431	366 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	PHO81	P17442	1178 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	COX11	P19516	300 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	RDS2	P19541	446 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	KIN3	P22209	435 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	GIT1	P25346	518 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	ITR2	P30606	609 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	VMA6	P32366	345 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	MRPL37	P36532	105 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	PGM2	P37012	569 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	RCR1	P38212	213 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	YBR225W	P38321	900 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	RPN10	P38886	268 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	FRT2	P39734	528 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	RTR1	P40084	226 aa	Predicted RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	PIG2	P40187	538 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	ICE2	P40499	491 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	YIL089W	P40500	205 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	LIF1	P53150	421 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	SRC1	Q03707	834 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	OMS1	Q06668	471 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	YLR001C	Q07895	862 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	RPN8	Q08723	338 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	GUP2	Q08929	609 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	RAD59	Q12223	238 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	LDB17	Q12342	491 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	RVB2	Q12464	471 aa	Known RBP	4.96	□□□□□ -1.61
SEC9	YGR009C	NCB2	Q92317	146 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	MDM12	Q92328	271 aa		4.96	□□□□□ -1.61
SEC9	YGR009C	ADE3	P07245	946 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	SRD1	P09007	221 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	GFA1	P14742	717 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	MSD1	P15179	658 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	MDJ1	P35191	511 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	MAE1	P36013	669 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	AKL1	P38080	1108 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	STS1	P38637	319 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	YHL017W	P38745	532 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	LIN1	P38852	340 aa	Predicted RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	VID28	P40547	921 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	QRI7	P43122	407 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	YGR127W	P53275	312 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	PUS6	P53294	404 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	COQ6	P53318	479 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	RCM1	P53972	490 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	REG1	Q00816	1014 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	WAR1	Q03631	944 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	GTO3	Q04806	366 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	MSC3	Q05812	728 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	VPS74	Q06385	345 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	MET7	Q08645	548 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	THP3	Q12049	470 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	LEU9	Q12166	604 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	HMS1	Q12398	434 aa		4.96	□□□□□ -1.62
SEC9	YGR009C	TOP2	P06786	1428 aa	Known RBP	4.96	□□□□□ -1.62
SEC9	YGR009C	MATALPHA2	P0CY08	210 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	HMLALPHA2	P0CY09	210 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	KIN2	P13186	1147 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	CLB4	P24871	460 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	COT1	P32798	439 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
SEC9	YGR009C	EMP65	P40085	556 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	UFE1	P41834	346 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
SEC9	YGR009C	GLG2	P47011	380 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	HFM1	P51979	1187 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	MAL11	P53048	616 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	ARE2	P53629	642 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	RCF2	P53721	224 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	HEF3	P53978	1044 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	PUS9	Q12069	462 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	GRX6	Q12438	231 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	RAD7	P06779	565 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	GPA1	P08539	472 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	KGD1	P20967	1014 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	PEX1	P24004	1043 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 548.4 ms