RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	SAP1	P39955	897 aa	Known RBP	3.13	□□□□□ -1.91
RTR1	YER139C	UBP16	Q02863	499 aa		3.13	□□□□□ -1.91
RTR1	YER139C	PLM2	Q04383	521 aa		3.13	□□□□□ -1.91
RTR1	YER139C	GSH2	Q08220	491 aa		3.13	□□□□□ -1.91
RTR1	YER139C	YER175W-A	Q8TGU4	54 aa		3.13	□□□□□ -1.91
RTR1	YER139C	PLC1	P32383	869 aa		3.12	□□□□□ -1.91
RTR1	YER139C	YND1	P40009	630 aa		3.12	□□□□□ -1.91
RTR1	YER139C	NOP2	P40991	618 aa	Known RBP	3.12	□□□□□ -1.91
RTR1	YER139C	PEF1	P53238	335 aa		3.12	□□□□□ -1.91
RTR1	YER139C	YNL144C	P53907	740 aa		3.12	□□□□□ -1.91
RTR1	YER139C	LCB4	Q12246	624 aa		3.12	□□□□□ -1.91
RTR1	YER139C	CBP3	P21560	335 aa		3.11	□□□□□ -1.91
RTR1	YER139C	DGR2	P32330	852 aa		3.11	□□□□□ -1.91
RTR1	YER139C	HXT4	P32467	576 aa		3.11	□□□□□ -1.91
RTR1	YER139C	LAS21	P40367	830 aa		3.11	□□□□□ -1.91
RTR1	YER139C	PTA1	Q01329	785 aa	Predicted RBP	3.11	□□□□□ -1.91
RTR1	YER139C	ACS1	Q01574	713 aa		3.11	□□□□□ -1.91
RTR1	YER139C	OCA5	P38738	679 aa		3.1	□□□□□ -1.91
RTR1	YER139C	RRP8	P38961	392 aa	Known RBP	3.1	□□□□□ -1.91
RTR1	YER139C	VPS8	P39702	1274 aa		3.1	□□□□□ -1.91
RTR1	YER139C	MAM1	P40065	302 aa		3.1	□□□□□ -1.91
RTR1	YER139C	YJL107C	P42947	387 aa		3.1	□□□□□ -1.91
RTR1	YER139C	GZF3	P42944	551 aa	Known RBP	3.09	□□□□□ -1.91
RTR1	YER139C	SMA2	Q04658	369 aa		3.09	□□□□□ -1.91
RTR1	YER139C	YML053C	Q04978	212 aa		3.09	□□□□□ -1.91
RTR1	YER139C	RPL8A	P17076	256 aa	Known RBP	3.08	□□□□□ -1.92
RTR1	YER139C	RKM3	P38222	552 aa		3.08	□□□□□ -1.92
RTR1	YER139C	ORC5	P50874	479 aa		3.08	□□□□□ -1.92
RTR1	YER139C	YLR281C	Q05863	155 aa		3.08	□□□□□ -1.92
RTR1	YER139C	TIP41	Q12199	356 aa		3.08	□□□□□ -1.92
RTR1	YER139C	SES1	P07284	462 aa	Known RBP	3.07	□□□□□ -1.92
RTR1	YER139C	AEP2	P22136	580 aa		3.07	□□□□□ -1.92
RTR1	YER139C	FMP42	Q04991	504 aa		3.07	□□□□□ -1.92
RTR1	YER139C	NIC96	P34077	839 aa		3.06	□□□□□ -1.92
RTR1	YER139C	ARN1	P38731	627 aa		3.06	□□□□□ -1.92
RTR1	YER139C	PCL6	P40038	420 aa		3.06	□□□□□ -1.92
RTR1	YER139C	UBP7	P40453	1071 aa		3.06	□□□□□ -1.92
RTR1	YER139C	MTQ2	Q03920	221 aa	Predicted RBP	3.06	□□□□□ -1.92
RTR1	YER139C	YDL242W	Q07746	117 aa		3.06	□□□□□ -1.92
RTR1	YER139C	NGL1	Q08213	363 aa	Known RBP	3.06	□□□□□ -1.92
RTR1	YER139C	GSH1	P32477	678 aa		3.05	□□□□□ -1.92
RTR1	YER139C	TYS1	P36421	394 aa	Known RBP	3.05	□□□□□ -1.92
RTR1	YER139C	QRI7	P43122	407 aa		3.05	□□□□□ -1.92
RTR1	YER139C	MNN11	P46985	422 aa	Known RBP	3.05	□□□□□ -1.92
RTR1	YER139C	COS12	P53053	380 aa		3.05	□□□□□ -1.92
RTR1	YER139C	MDR1	P53258	950 aa		3.05	□□□□□ -1.92
RTR1	YER139C	FPR4	Q06205	392 aa	Predicted RBP	3.05	□□□□□ -1.92
RTR1	YER139C	GPN2	Q08726	347 aa	Predicted RBP	3.05	□□□□□ -1.92
RTR1	YER139C	ARG1	P22768	420 aa		3.04	□□□□□ -1.92
RTR1	YER139C	MNN2	P38069	597 aa		3.04	□□□□□ -1.92
RTR1	YER139C	STB5	P38699	743 aa		3.04	□□□□□ -1.92
RTR1	YER139C	IMP4	P53941	290 aa	Known RBP	3.04	□□□□□ -1.92
RTR1	YER139C	YAT1	P80235	687 aa		3.04	□□□□□ -1.92
RTR1	YER139C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	3.04	□□□□□ -1.92	not detected
RTR1	YER139C	PRP16	P15938	1071 aa	Predicted RBP	3.03	□□□□□ -1.92
RTR1	YER139C	ATP12	P22135	325 aa		3.03	□□□□□ -1.92
RTR1	YER139C	CWH43	P25618	953 aa		3.03	□□□□□ -1.92
RTR1	YER139C	DID4	P36108	232 aa		3.03	□□□□□ -1.92
RTR1	YER139C	BZZ1	P38822	633 aa		3.03	□□□□□ -1.92
RTR1	YER139C	ARO9	P38840	513 aa	Predicted RBP	3.03	□□□□□ -1.92
RTR1	YER139C	OSW7	P43611	510 aa		3.03	□□□□□ -1.92
RTR1	YER139C	SND1	Q04007	877 aa		3.03	□□□□□ -1.92
RTR1	YER139C	YLR352W	Q06479	807 aa		3.03	□□□□□ -1.92
RTR1	YER139C	YTM1	Q12024	460 aa	Predicted RBP	3.03	□□□□□ -1.92
RTR1	YER139C	VPS5	Q92331	675 aa		3.03	□□□□□ -1.92
RTR1	YER139C	NOP14	Q99207	810 aa	Known RBP	3.03	□□□□□ -1.92
RTR1	YER139C	CDC23	P16522	626 aa		3.02	□□□□□ -1.93
RTR1	YER139C	EXO84	P38261	753 aa		3.02	□□□□□ -1.93
RTR1	YER139C	RNR4	P49723	345 aa	Known RBP	3.02	□□□□□ -1.93
RTR1	YER139C	FCP1	Q03254	732 aa		3.02	□□□□□ -1.93
RTR1	YER139C	IZH1	Q03419	316 aa		3.02	□□□□□ -1.93
RTR1	YER139C	RSA1	Q08932	381 aa		3.02	□□□□□ -1.93
RTR1	YER139C	SER1	P33330	395 aa	Known RBP	3.01	□□□□□ -1.93
RTR1	YER139C	LNP1	P38878	278 aa		3.01	□□□□□ -1.93
RTR1	YER139C	VPS25	P47142	202 aa		3.01	□□□□□ -1.93
RTR1	YER139C	THI73	Q07904	523 aa		3.01	□□□□□ -1.93
RTR1	YER139C	KGD2	P19262	463 aa	Predicted RBP	3	□□□□□ -1.93
RTR1	YER139C	SAN1	P22470	610 aa		3	□□□□□ -1.93
RTR1	YER139C	MSS51	P32335	436 aa		3	□□□□□ -1.93
RTR1	YER139C	ROK1	P45818	564 aa	Predicted RBP	3	□□□□□ -1.93
RTR1	YER139C	MNT2	P53059	558 aa		3	□□□□□ -1.93
RTR1	YER139C	YGL036W	P53185	909 aa	Predicted RBP	3	□□□□□ -1.93
RTR1	YER139C	RNH70	P53331	553 aa		3	□□□□□ -1.93
RTR1	YER139C	CRZ1	P53968	678 aa		3	□□□□□ -1.93
RTR1	YER139C	APL5	Q08951	932 aa	Known RBP	3	□□□□□ -1.93
RTR1	YER139C	YLR112W	Q12130	139 aa		3	□□□□□ -1.93
RTR1	YER139C	ILV2	P07342	687 aa	Known RBP	2.99	□□□□□ -1.93
RTR1	YER139C	SEC1	P30619	724 aa	Known RBP	2.99	□□□□□ -1.93
RTR1	YER139C	EFM2	P38347	419 aa		2.99	□□□□□ -1.93
RTR1	YER139C	VBA2	P38358	474 aa	Known RBP	2.99	□□□□□ -1.93
RTR1	YER139C	SRP68	P38687	599 aa	Known RBP	2.99	□□□□□ -1.93
RTR1	YER139C	VPS41	P38959	992 aa		2.99	□□□□□ -1.93
RTR1	YER139C	ASG1	P40467	964 aa		2.99	□□□□□ -1.93
RTR1	YER139C	IRC5	P43610	853 aa		2.99	□□□□□ -1.93
RTR1	YER139C	URA3	P03962	267 aa		2.98	□□□□□ -1.93
RTR1	YER139C	SLX1	P38324	304 aa		2.98	□□□□□ -1.93
RTR1	YER139C	TPA1	P40032	644 aa	Known RBP	2.98	□□□□□ -1.93
RTR1	YER139C	HLJ1	P48353	224 aa		2.98	□□□□□ -1.93
RTR1	YER139C	ARP9	Q05123	467 aa		2.98	□□□□□ -1.93
RTR1	YER139C	THI3	Q07471	609 aa		2.98	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 74.2 ms