RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 BHLHE41Q9C0J9 482 aaPredicted RBP2.26□□□□□ -2.05
BRCA1-202ENST00000354071 RBSNQ9H1K0 784 aa2.26□□□□□ -2.05
BRCA1-202ENST00000354071 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 ATXN7O15265 892 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 EPHA1P21709 976 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 ZCRB1Q8TBF4 217 aaKnown RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 KLHL6Q8WZ60 621 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 DPH2Q9BQC3 489 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 TARS2Q9BW92 718 aaKnown RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 COL25A1Q9BXS0 654 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 LRRC3Q9BY71 257 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 TMEM39AQ9NV64 488 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 RSF1Q96T23 1441 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 VIL1P09327 827 aaKnown RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 CPB1P15086 417 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PCBP4P57723 403 aaKnown RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 MPP2Q14168 576 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 HIF1AQ16665 826 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 SLC10A6Q3KNW5 377 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 OVOS1Q6IE37 1185 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 RNF180Q86T96 592 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 SLC9A7Q96T83 725 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PRDM16Q9HAZ2 1276 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 KIF21AQ7Z4S6 1674 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 CLSTN1O94985 981 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 HTR3BO95264 441 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 EIF2AK2P19525 551 aaKnown RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 LAMC2Q13753 1193 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 ZNF460Q14592 562 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PODNQ7Z5L7 613 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 C14orf80Q86SX3 495 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 THAP3Q8WTV1 239 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 COG1Q8WTW3 980 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PLPPR2Q96GM1 343 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 HOMER2Q9NSB8 354 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 KLHL3Q9UH77 587 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 TOP2BQ02880 1626 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 CLASP1Q7Z460 1538 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 SHTN1A0MZ66 631 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 BLACEA4D250 179 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 KCNQ2O43526 872 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 SNRPNP63162 240 aaKnown RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PCDH1Q08174 1060 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 ZNF252P-AS1Q0IIN9 211 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PABPC4Q13310 644 aaKnown RBP eCLIP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 FXNQ16595 210 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 TM4SF20Q53R12 229 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 TNNI3KQ59H18 835 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 WIPI1Q5MNZ9 446 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-202ENST00000354071 LRFN4Q6PJG9 635 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 JMYQ8N9B5 988 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PBX4Q9BYU1 374 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 PPP4R2Q9NY27 417 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 APEX2Q9UBZ4 518 aa2.25□□□□□ -2.05
BRCA1-202ENST00000354071 DLL1O00548 723 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 ALDH1L1O75891 902 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 STAT3P40763 770 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 SRSF11Q05519 484 aaKnown RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 TTF1Q15361 905 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 SF1Q15637 639 aaKnown RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 GDF6Q6KF10 455 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 KIAA1211LQ6NV74 962 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 LLGL2Q6P1M3 1020 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 VHLLQ6RSH7 139 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 UNC5AQ6ZN44 842 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 UBE3DQ7Z6J8 389 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 PPFIBP1Q86W92 1011 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 NIM1KQ8IY84 436 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 TMEM102Q8N9M5 508 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 GPBAR1Q8TDU6 330 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 SLC7A3Q8WY07 619 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 SLKQ9H2G2 1235 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 CLEC4MQ9H2X3 399 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 ALKQ9UM73 1620 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 LOC102724428A0A0B4J2F2 783 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 DCDC2CA8MYV0 355 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 SCGB1D2O95969 90 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 B3GALT4O96024 378 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 TP53P04637 393 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 ID4P47928 161 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 ZNF165P49910 485 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 RAB27AP51159 221 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 SIK1P57059 783 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 HYAL2Q12891 473 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 MTMR1Q13613 665 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 PERM1Q5SV97 790 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 GTPBP3Q969Y2 492 aaKnown RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 ZNF512BQ96KM6 892 aaPredicted RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 BRINP2Q9C0B6 783 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 CEP44Q9C0F1 390 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 ARHGEF4Q9NR80 690 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 REV1Q9UBZ9 1251 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 PCF11O94913 1555 aaKnown RBP2.24□□□□□ -2.05
BRCA1-202ENST00000354071 PRAMEF27A3QJZ7 478 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 CHURC1-FNTBB4DL54 471 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 C9IYK1 514 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 DLGAP3O95886 979 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 CASP7P55210 303 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 STRN3Q13033 797 aa2.24□□□□□ -2.05
BRCA1-202ENST00000354071 COL9A2Q14055 689 aaPredicted RBP2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms