RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Dkk4Q8VEJ3 221 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv3-8A0A075B5T0 131 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Lyzl4Q9D925 145 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ly6g5bQ8K1T4 194 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 SbpP15501 199 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-9A0A0A6YW37 117 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm26727M0QWT1 121 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm37988J3QM41 62 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Brd3osA0A1B0GRB6 84 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm11733Q8BQP1 125 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Dpm3Q9D1Q4 92 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 AcacbE9Q4Z2 2448 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Trav14-2A0A075B694 121 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm5294J3QP53 216 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P04943 107 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-49A0A0A6YWX2 117 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tm2d1Q99MB3 208 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Mlst8Q9DCJ1 326 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Dopey1Q8BL99 2399 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tns1E9Q0S6 1888 aaKnown RBP12.21□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm11020F6ZGD5 61 aa12.21□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Tmem210Q9D2F0 147 aa12.21□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Trbv30A0A0B4J1P1 111 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm16381A0A1Y7VKT9 73 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Mki67E9PVX6 3177 aaKnown RBP12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Spink1P09036 80 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 9130230L23RikQ8CC80 163 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 OtoglF7A4A7 2325 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ccl25O35903 144 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 P01802 115 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Tomm7Q9D173 55 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv6-7A0A0A6YWU3 119 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm10775Q3V290 127 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Trav14d-1A0A075B6B1 121 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Samd13D3YUG0 102 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Rpl32-psP17932 135 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Pla2g2aP31482 146 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Samd5Q3V1H9 173 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ociad2Q9D8W7 154 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm28038F7BCN9 126 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Sap30O88574 220 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Crip1P63254 77 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Oxld1Q9CR10 201 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 CenpfE9Q3P4 2997 aaKnown RBP12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Igkv4-70A0A0B4J1I5 116 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm7075D3Z497 112 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 P01791 123 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Clec5aQ9R007 190 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 NrgnP60761 78 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 9230109A22RikQ8BHE6 111 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ube2wQ8VDW4 151 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Taf15Q8BQ46 557 aaKnown RBP12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Spg11Q3UHA3 2430 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Trav3-4A0A075B654 114 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv1-74A0A0G2JGK2 117 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 E030018B13RikJ3QMS9 113 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ndufa4Q62425 82 aaKnown RBP12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 DysfQ9ESD7 2090 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Dph3Q8K0W9 82 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 4930442H23RikQ9D5G7 103 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 H2-DMb1P35737 261 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 P01674 108 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 MrapQ9D159 127 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Hrct1Q9D6B9 109 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Sptbn4E9PX29 2561 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Hist1h4aP62806 103 aaKnown RBP12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ang5Q5GAN1 145 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv1-4A0A075B5T4 117 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Lce6aD3YV94 81 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 March3Q8BRX9 218 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Cd24P24807 76 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Pglyrp4Q0VB07 374 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm9961Q8BNV2 113 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv8-8A0A0A6YXQ0 119 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm2564F6Z9S8 108 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ccl19O70460 108 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Wfdc2Q9DAU7 174 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 NbasE9Q411 2356 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Igkv4-81A0A0G2JEY5 119 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Mapk1ip1lQ8BH93 242 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 NpbQ8K4P1 119 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 PmvkQ9D1G2 192 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 P01741 114 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Cysrt1Q9D1E4 142 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 HampQ9EQ21 83 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Cox11Q6P8I6 275 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Trav4n-4A0A075B615 110 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ighv8-4A0A0A6YW26 117 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 PkigO70139 76 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 CrygbP04344 175 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Gata4Q08369 441 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ypel4Q65Z93 127 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 H1fxQ80ZM5 188 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ankrd39Q9D2X0 183 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Tax1bp3Q9DBG9 124 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Pygo2Q80V76 405 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Shisal2aA2A9G7 189 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Fam24aQ8CF27 98 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Cdpf1Q8R3A2 119 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 NpsP0C0P8 89 aa12.12□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 142.5 ms