RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Gm28038F7BCN9 126 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Sumo2P61957 95 aaKnown RBP9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Spag11Q8K4N2 71 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Atp6v0bQ91V37 205 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Ociad2Q9D8W7 154 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Gm33815A0A087WNV3 176 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Gm29423A0A087WRM1 55 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 P0C913 63 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Trav7d-3Q5R1I1 112 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Higd1aQ9JLR9 95 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 SetxA2AKX3 2646 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Dmxl1Q6PNC0 3013 aa9.98□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Ighv1-80A0A075B5Y3 117 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 P01756 117 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 P01757 117 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Ighv14-1A0A075B5R4 117 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Gm10521E9PZK0 135 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Defa16P50714 93 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 3110018I06RikQ9CXS0 120 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Tmem89Q9DA04 169 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Arhgap32Q811P8 2089 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Tex26Q0VB26 296 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Fam24aQ8CF27 98 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Tac4Q99N14 128 aa9.97□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Sdhaf1Q3U276 118 aa9.96□□□□□ -0.81
Clcn3-201ENSMUST00000004430 PmvkQ9D1G2 192 aa9.96□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Ang5Q5GAN1 145 aa9.96□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Fam241bQ9D882 120 aa9.96□□□□□ -0.81
Clcn3-201ENSMUST00000004430 Usp9xP70398 2559 aaKnown RBP9.96□□□□□ -0.82
Clcn3-201ENSMUST00000004430 P01741 114 aa9.96□□□□□ -0.82
Clcn3-201ENSMUST00000004430 MdfiP70331 251 aa9.96□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Mustn1Q99JI1 82 aa9.96□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Celsr3Q91ZI0 3301 aa9.96□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm17334Q8C6U3 126 aa9.96□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Srp14P16254 110 aaKnown RBP9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Snrpd3P62320 126 aaKnown RBP9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Spsb3Q571F5 354 aa9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 9230109A22RikQ8BHE6 111 aa9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Clec5aQ9R007 190 aa9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Wisp2Q9Z0G4 251 aa9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Fam216bQ8CC14 138 aa9.95□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Tctex1d4Q8CDY7 219 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ighv1-20A0A0A6YX66 117 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 P01812 117 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Rasl10aQ8K5A4 203 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ighv1-9A0A0A6YW37 117 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm2174F6ZVF2 133 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm5294J3QP53 216 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm26602M0QWA4 95 aa9.94□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Sigmar1O55242 223 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Hist1h1tQ07133 208 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Cox6cQ9CPQ1 76 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Tal2Q62282 108 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Iah1Q9DB29 249 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 ApomQ9Z1R3 190 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 FryE9Q8I9 3020 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ptpn13Q64512 2453 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 4930447F04RikA2AFR2 126 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Lgals6O54891 301 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Mrps12O35680 139 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Foxi1Q922I5 372 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 SNORCQ9CXL7 121 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 MrapQ9D159 127 aa9.93□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Trav6-4A0A075B6B4 115 aa9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Map6d1Q14BB9 191 aa9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Wdfy4E9Q2M9 3149 aa9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gata3P23772 443 aa9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ccl25O35903 144 aa9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ndufa4Q62425 82 aaKnown RBP9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Mettl26Q9DCS2 204 aa9.92□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ankhd1E9PUR0 2548 aaKnown RBP9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Lrcol1Q3URS3 161 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm10192Q3V0S1 108 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm12689Q8BQU9 117 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ankrd39Q9D2X0 183 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Avpi1Q9D7H4 142 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Ramp1Q9WTJ5 148 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Prrc2cQ3TLH4 2846 aaKnown RBP9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Kiaa1549Q68FD9 1940 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Iglc1A0A0G2JE99 106 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 P01843 105 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Spink1P09036 80 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 CirbpP60824 172 aaKnown RBP9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm10767Q3TQP0 103 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Bles03Q8VD62 251 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gemin7Q9CWY4 129 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Prrc2aQ7TSC1 2158 aaKnown RBP9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gp9O88186 177 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 P04943 107 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Cox11Q6P8I6 275 aa9.91□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Dmrt3Q80WT2 476 aa9.9□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Olfr1199Q8VF94 310 aa9.9□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Gm7849D3YX03 116 aa9.9□□□□□ -0.82
Clcn3-201ENSMUST00000004430 GlrxQ9QUH0 107 aa9.9□□□□□ -0.82
Clcn3-201ENSMUST00000004430 P04219 140 aa9.9□□□□□ -0.82
Clcn3-201ENSMUST00000004430 Nav3Q80TN7 2359 aa9.9□□□□□ -0.83
Clcn3-201ENSMUST00000004430 DscamQ9ERC8 2013 aa9.89□□□□□ -0.83
Clcn3-201ENSMUST00000004430 Spata46Q4FZF2 204 aa9.89□□□□□ -0.83
Clcn3-201ENSMUST00000004430 Gm9961Q8BNV2 113 aa9.89□□□□□ -0.83
Clcn3-201ENSMUST00000004430 Hivep2Q3UHF7 2430 aa9.89□□□□□ -0.83
Retrieved 100 of 22,080 RNA–protein pairs in 75.7 ms