RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	SPRR2A	P35326	72 aa		0.62	□□□□□ -2.31
CNOT1-223	ENST00000628857	BRCA2	P51587	3418 aa		0.61	□□□□□ -2.31
CNOT1-223	ENST00000628857	PLEC	Q15149	4684 aa	Known RBP	0.61	□□□□□ -2.31
CNOT1-223	ENST00000628857	MYO9A	B2RTY4	2548 aa		0.61	□□□□□ -2.31
CNOT1-223	ENST00000628857	KRTAP6-2	Q3LI66	62 aa		0.61	□□□□□ -2.31
CNOT1-223	ENST00000628857	IGSF10	Q6WRI0	2623 aa		0.61	□□□□□ -2.31
CNOT1-223	ENST00000628857	APOB	P04114	4563 aa	Known RBP	0.6	□□□□□ -2.31
CNOT1-223	ENST00000628857	DNAH17	Q9UFH2	4485 aa		0.6	□□□□□ -2.31
CNOT1-223	ENST00000628857	DNAH5	Q8TE73	4624 aa		0.6	□□□□□ -2.31
CNOT1-223	ENST00000628857	WDFY3	Q8IZQ1	3526 aa		0.59	□□□□□ -2.32
CNOT1-223	ENST00000628857	FAT1	Q14517	4588 aa		0.59	□□□□□ -2.32
CNOT1-223	ENST00000628857	SPRR2F	Q96RM1	72 aa		0.58	□□□□□ -2.32
CNOT1-223	ENST00000628857	DNAH14	Q0VDD8	3507 aa		0.57	□□□□□ -2.32
CNOT1-223	ENST00000628857	SPRR2E	P22531	72 aa		0.56	□□□□□ -2.32
CNOT1-223	ENST00000628857	LPA	P08519	4548 aa		0.56	□□□□□ -2.32
CNOT1-223	ENST00000628857	KRTAP21-1	Q3LI58	79 aa		0.55	□□□□□ -2.32
CNOT1-223	ENST00000628857	SYNE1	Q8NF91	8797 aa	Known RBP	0.55	□□□□□ -2.32
CNOT1-223	ENST00000628857	DYNC1H1	Q14204	4646 aa	Known RBP	0.55	□□□□□ -2.32
CNOT1-223	ENST00000628857	MT1E	P04732	61 aa		0.53	□□□□□ -2.32
CNOT1-223	ENST00000628857	SPRR2G	Q9BYE4	73 aa		0.53	□□□□□ -2.32
CNOT1-223	ENST00000628857	GPR98	Q8WXG9	6306 aa		0.52	□□□□□ -2.33
CNOT1-223	ENST00000628857	MUC17	Q685J3	4493 aa		0.52	□□□□□ -2.33
CNOT1-223	ENST00000628857	CDH23	Q9H251	3354 aa		0.51	□□□□□ -2.33
CNOT1-223	ENST00000628857	STARD9	Q9P2P6	4700 aa		0.5	□□□□□ -2.33
CNOT1-223	ENST00000628857	LRP1B	Q9NZR2	4599 aa		0.5	□□□□□ -2.33
CNOT1-223	ENST00000628857	MT1L	Q93083	61 aa		0.5	□□□□□ -2.33
CNOT1-223	ENST00000628857	HMCN1	Q96RW7	5635 aa		0.5	□□□□□ -2.33
CNOT1-223	ENST00000628857	MT1H	P80294	61 aa		0.48	□□□□□ -2.33
CNOT1-223	ENST00000628857	MT1X	P80297	61 aa		0.46	□□□□□ -2.34
CNOT1-223	ENST00000628857	HERC1	Q15751	4861 aa		0.46	□□□□□ -2.34
CNOT1-223	ENST00000628857	KRTAP19-8	Q3LI54	63 aa		0.44	□□□□□ -2.34
CNOT1-223	ENST00000628857	LRP2	P98164	4655 aa		0.43	□□□□□ -2.34
CNOT1-223	ENST00000628857	MT1G	P13640	62 aa		0.4	□□□□□ -2.35
CNOT1-223	ENST00000628857	HMCN2	Q8NDA2	5059 aa		0.4	□□□□□ -2.35
CNOT1-223	ENST00000628857	KRTAP19-7	Q3SYF9	63 aa		0.39	□□□□□ -2.35
CNOT1-223	ENST00000628857	MACF1	Q9UPN3	7388 aa	Known RBP	0.37	□□□□□ -2.35
CNOT1-223	ENST00000628857	MT1B	P07438	61 aa		0.36	□□□□□ -2.35
CNOT1-223	ENST00000628857	KRTAP19-2	Q3LHN2	52 aa		0.36	□□□□□ -2.35
CNOT1-223	ENST00000628857	MUC2	Q02817	5179 aa		0.35	□□□□□ -2.35
CNOT1-223	ENST00000628857	AHNAK	Q09666	5890 aa	Known RBP	0.35	□□□□□ -2.35
CNOT1-223	ENST00000628857	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.35	□□□□□ -2.35
CNOT1-223	ENST00000628857	MT2A	P02795	61 aa		0.35	□□□□□ -2.35
CNOT1-223	ENST00000628857	KRTAP6-1	Q3LI64	71 aa		0.35	□□□□□ -2.35
CNOT1-223	ENST00000628857	SSPO	A2VEC9	5147 aa		0.35	□□□□□ -2.35
CNOT1-223	ENST00000628857	DNHD1	Q96M86	4753 aa		0.34	□□□□□ -2.35
CNOT1-223	ENST00000628857	MT1M	Q8N339	61 aa		0.34	□□□□□ -2.36
CNOT1-223	ENST00000628857	MDN1	Q9NU22	5596 aa		0.34	□□□□□ -2.36
CNOT1-223	ENST00000628857	KMT2C	Q8NEZ4	4911 aa	Known RBP	0.33	□□□□□ -2.36
CNOT1-223	ENST00000628857	FAT4	Q6V0I7	4981 aa		0.32	□□□□□ -2.36
CNOT1-223	ENST00000628857	MUC5AC	P98088	5654 aa		0.31	□□□□□ -2.36
CNOT1-223	ENST00000628857	USH2A	O75445	5202 aa		0.31	□□□□□ -2.36
CNOT1-223	ENST00000628857	RYR1	P21817	5038 aa		0.3	□□□□□ -2.36
CNOT1-223	ENST00000628857	PHGR1	C9JFL3	82 aa		0.29	□□□□□ -2.36
CNOT1-223	ENST00000628857	MT1HL1	P0DM35	61 aa		0.29	□□□□□ -2.36
CNOT1-223	ENST00000628857	KMT2D	O14686	5537 aa		0.28	□□□□□ -2.36
CNOT1-223	ENST00000628857	PCLO	Q9Y6V0	5065 aa		0.27	□□□□□ -2.37
CNOT1-223	ENST00000628857	RYR3	Q15413	4870 aa		0.27	□□□□□ -2.37
CNOT1-223	ENST00000628857	BIRC6	Q9NR09	4857 aa		0.27	□□□□□ -2.37
CNOT1-223	ENST00000628857	AHNAK2	Q8IVF2	5795 aa		0.27	□□□□□ -2.37
CNOT1-223	ENST00000628857	MT1F	P04733	61 aa		0.27	□□□□□ -2.37
CNOT1-223	ENST00000628857	HERC2	O95714	4834 aa		0.27	□□□□□ -2.37
CNOT1-223	ENST00000628857	HYDIN	Q4G0P3	5121 aa		0.26	□□□□□ -2.37
CNOT1-223	ENST00000628857	DST	Q03001	7570 aa	Known RBP	0.24	□□□□□ -2.37
CNOT1-223	ENST00000628857	UBR4	Q5T4S7	5183 aa		0.24	□□□□□ -2.37
CNOT1-223	ENST00000628857	NEB	P20929	6669 aa		0.23	□□□□□ -2.37
CNOT1-223	ENST00000628857	SYNE2	Q8WXH0	6885 aa	Known RBP	0.23	□□□□□ -2.37
CNOT1-223	ENST00000628857	RNF213	Q63HN8	5207 aa		0.23	□□□□□ -2.37
CNOT1-223	ENST00000628857	FSIP2	Q5CZC0	6907 aa		0.22	□□□□□ -2.37
CNOT1-223	ENST00000628857	KIAA1109	Q2LD37	5005 aa		0.17	□□□□□ -2.38
CNOT1-223	ENST00000628857	RYR2	Q92736	4967 aa		0.16	□□□□□ -2.38
CNOT1-223	ENST00000628857	MUC12	Q9UKN1	5478 aa		0.15	□□□□□ -2.38
CNOT1-223	ENST00000628857	EPPK1	P58107	5090 aa	Known RBP	0.13	□□□□□ -2.39
CNOT1-223	ENST00000628857	MT4	P47944	62 aa		0.11	□□□□□ -2.39
CNOT1-223	ENST00000628857	KRTAP20-2	Q3LI61	65 aa		0.11	□□□□□ -2.39
CNOT1-223	ENST00000628857	ABCA13	Q86UQ4	5058 aa		0.1	□□□□□ -2.39
CNOT1-223	ENST00000628857	KRTAP20-1	Q3LI63	56 aa		0.08	□□□□□ -2.4
CNOT1-223	ENST00000628857	KRTAP19-6	Q3LI70	58 aa		0.01	□□□□□ -2.41

Retrieved 77 of 20,778 RNA–protein pairs in 8.7 ms