RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PCNTO95613 3336 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 BOD1L1Q8NFC6 3051 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 VPS13DQ5THJ4 4388 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 SACSQ9NZJ4 4579 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 SPTBN5Q9NRC6 3674 aaKnown RBP-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 STATHP02808 62 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 MT1FP04733 61 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 HTN3P15516 51 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 VPS13BQ7Z7G8 4022 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH2Q9P225 4427 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 TLN1Q9Y490 2541 aaKnown RBP-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 CEP350Q5VT06 3117 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 FAT1Q14517 4588 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH1Q9P2D7 4330 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH3Q8TD57 4116 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 CFAP46Q8IYW2 2715 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 PKHD1P08F94 4074 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH11Q96DT5 4516 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 CEP295Q9C0D2 2601 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH8Q96JB1 4490 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 ITPR2Q14571 2701 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 MYO9AB2RTY4 2548 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 SPEGQ15772 3267 aa-0.07□□□□□ -2.42
RNU4-54P-201ENST00000516428 EP400Q96L91 3159 aa-0.08□□□□□ -2.42
RNU4-54P-201ENST00000516428 MUC2Q02817 5179 aa-0.08□□□□□ -2.42
RNU4-54P-201ENST00000516428 CENPEQ02224 2701 aa-0.08□□□□□ -2.42
RNU4-54P-201ENST00000516428 KRTAP19-2Q3LHN2 52 aa-0.08□□□□□ -2.42
RNU4-54P-201ENST00000516428 APOBP04114 4563 aaKnown RBP-0.08□□□□□ -2.42
RNU4-54P-201ENST00000516428 KMT2CQ8NEZ4 4911 aaKnown RBP-0.08□□□□□ -2.42
RNU4-54P-201ENST00000516428 PCLOQ9Y6V0 5065 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH6Q9C0G6 4158 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 GOLGB1Q14789 3259 aaKnown RBP-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 CFAP47Q6ZTR5 3102 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH10Q8IVF4 4471 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 AKAP9Q99996 3911 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 UNC80Q8N2C7 3258 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH9Q9NYC9 4486 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 CENPFP49454 3210 aa-0.09□□□□□ -2.42
RNU4-54P-201ENST00000516428 BRCA2P51587 3418 aa-0.1□□□□□ -2.42
RNU4-54P-201ENST00000516428 VCANP13611 3396 aa-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 MUC17Q685J3 4493 aa-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 USH2AO75445 5202 aa-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 MUC12Q9UKN1 5478 aa-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 PLECQ15149 4684 aaKnown RBP-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 VPS13AQ96RL7 3174 aa-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 DNAH7Q8WXX0 4024 aa-0.1□□□□□ -2.43
RNU4-54P-201ENST00000516428 DNAH17Q9UFH2 4485 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 ASPMQ8IZT6 3477 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 HERC1Q15751 4861 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 SMG1Q96Q15 3661 aaKnown RBP-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 KRTAP20-1Q3LI63 56 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 STARD9Q9P2P6 4700 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 DMDP11532 3685 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 VPS13CQ709C8 3753 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 TRRAPQ9Y4A5 3859 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 USP34Q70CQ2 3546 aa-0.11□□□□□ -2.43
RNU4-54P-201ENST00000516428 WDFY3Q8IZQ1 3526 aa-0.12□□□□□ -2.43
RNU4-54P-201ENST00000516428 DYNC1H1Q14204 4646 aaKnown RBP-0.12□□□□□ -2.43
RNU4-54P-201ENST00000516428 UTRNP46939 3433 aa-0.12□□□□□ -2.43
RNU4-54P-201ENST00000516428 RYR1P21817 5038 aa-0.13□□□□□ -2.43
RNU4-54P-201ENST00000516428 DNHD1Q96M86 4753 aa-0.13□□□□□ -2.43
RNU4-54P-201ENST00000516428 NEBP20929 6669 aa-0.13□□□□□ -2.43
RNU4-54P-201ENST00000516428 UBR4Q5T4S7 5183 aa-0.13□□□□□ -2.43
RNU4-54P-201ENST00000516428 KRTAP19-6Q3LI70 58 aa-0.14□□□□□ -2.43
RNU4-54P-201ENST00000516428 CDH23Q9H251 3354 aa-0.14□□□□□ -2.43
RNU4-54P-201ENST00000516428 DNAH5Q8TE73 4624 aa-0.15□□□□□ -2.43
RNU4-54P-201ENST00000516428 RYR3Q15413 4870 aa-0.15□□□□□ -2.43
RNU4-54P-201ENST00000516428 RNF213Q63HN8 5207 aa-0.15□□□□□ -2.43
RNU4-54P-201ENST00000516428 BIRC6Q9NR09 4857 aa-0.16□□□□□ -2.44
RNU4-54P-201ENST00000516428 EPPK1P58107 5090 aaKnown RBP-0.17□□□□□ -2.44
RNU4-54P-201ENST00000516428 HERC2O95714 4834 aa-0.17□□□□□ -2.44
RNU4-54P-201ENST00000516428 HYDINQ4G0P3 5121 aa-0.17□□□□□ -2.44
RNU4-54P-201ENST00000516428 KIAA1109Q2LD37 5005 aa-0.18□□□□□ -2.44
RNU4-54P-201ENST00000516428 DNAH14Q0VDD8 3507 aa-0.18□□□□□ -2.44
RNU4-54P-201ENST00000516428 RYR2Q92736 4967 aa-0.18□□□□□ -2.44
RNU4-54P-201ENST00000516428 ABCA13Q86UQ4 5058 aa-0.2□□□□□ -2.44
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms