RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CCDC18Q5T9S5 1454 aa-1.05□□□□□ -2.58
NUP54-215ENST00000514313 GNG13Q9P2W3 67 aa-1.05□□□□□ -2.58
NUP54-215ENST00000514313 M0R1W7 72 aa-1.06□□□□□ -2.58
NUP54-215ENST00000514313 ALS2Q96Q42 1657 aa-1.07□□□□□ -2.58
NUP54-215ENST00000514313 PDCD5O14737 125 aa-1.07□□□□□ -2.58
NUP54-215ENST00000514313 ABCC1P33527 1531 aa-1.07□□□□□ -2.58
NUP54-215ENST00000514313 GOLGB1Q14789 3259 aaKnown RBP-1.07□□□□□ -2.58
NUP54-215ENST00000514313 UGGT1Q9NYU2 1555 aa-1.08□□□□□ -2.58
NUP54-215ENST00000514313 A0A096LNI7 61 aa-1.09□□□□□ -2.58
NUP54-215ENST00000514313 H0YGX0 51 aa-1.09□□□□□ -2.58
NUP54-215ENST00000514313 LINC01590Q5TEZ4 76 aa-1.09□□□□□ -2.58
NUP54-215ENST00000514313 AGLP35573 1532 aa-1.1□□□□□ -2.58
NUP54-215ENST00000514313 SYCP2Q9BX26 1530 aa-1.1□□□□□ -2.59
NUP54-215ENST00000514313 DCAF1Q9Y4B6 1507 aa-1.1□□□□□ -2.59
NUP54-215ENST00000514313 TOMM7Q9P0U1 55 aa-1.11□□□□□ -2.59
NUP54-215ENST00000514313 CFAP74Q9C0B2 1584 aa-1.12□□□□□ -2.59
NUP54-215ENST00000514313 LINC01549A6NIU2 74 aa-1.12□□□□□ -2.59
NUP54-215ENST00000514313 PLNP26678 52 aa-1.12□□□□□ -2.59
NUP54-215ENST00000514313 HILPDAQ9Y5L2 63 aa-1.12□□□□□ -2.59
NUP54-215ENST00000514313 DUOX2Q9NRD8 1548 aa-1.12□□□□□ -2.59
NUP54-215ENST00000514313 ABCA8O94911 1581 aa-1.13□□□□□ -2.59
NUP54-215ENST00000514313 TFF3Q07654 80 aa-1.13□□□□□ -2.59
NUP54-215ENST00000514313 C18orf32Q8TCD1 76 aa-1.13□□□□□ -2.59
NUP54-215ENST00000514313 DDX60Q8IY21 1712 aaKnown RBP-1.14□□□□□ -2.59
NUP54-215ENST00000514313 IGIPA6NJ69 53 aa-1.14□□□□□ -2.59
NUP54-215ENST00000514313 TRPM2O94759 1503 aa-1.15□□□□□ -2.59
NUP54-215ENST00000514313 CLTCL1P53675 1640 aa-1.15□□□□□ -2.59
NUP54-215ENST00000514313 ABCA6Q8N139 1617 aa-1.15□□□□□ -2.59
NUP54-215ENST00000514313 DEFB124Q8NES8 71 aa-1.15□□□□□ -2.59
NUP54-215ENST00000514313 NFAT5O94916 1531 aa-1.15□□□□□ -2.59
NUP54-215ENST00000514313 DEFB104AQ8WTQ1 72 aa-1.16□□□□□ -2.6
NUP54-215ENST00000514313 ABCA9Q8IUA7 1624 aa-1.18□□□□□ -2.6
NUP54-215ENST00000514313 CPS1P31327 1500 aa-1.18□□□□□ -2.6
NUP54-215ENST00000514313 LINC01556Q5JQF7 62 aa-1.18□□□□□ -2.6
NUP54-215ENST00000514313 ADCY10Q96PN6 1610 aa-1.19□□□□□ -2.6
NUP54-215ENST00000514313 PRXQ9BXM0 1461 aa-1.2□□□□□ -2.6
NUP54-215ENST00000514313 ABCA5Q8WWZ7 1642 aa-1.21□□□□□ -2.6
NUP54-215ENST00000514313 NDUFA1O15239 70 aa-1.21□□□□□ -2.6
NUP54-215ENST00000514313 SMCO4Q9NRQ5 59 aa-1.21□□□□□ -2.6
NUP54-215ENST00000514313 UGGT2Q9NYU1 1516 aa-1.21□□□□□ -2.6
NUP54-215ENST00000514313 ERICH3Q5RHP9 1530 aa-1.24□□□□□ -2.61
NUP54-215ENST00000514313 ABCA10Q8WWZ4 1543 aa-1.25□□□□□ -2.61
NUP54-215ENST00000514313 IQGAP3Q86VI3 1631 aa-1.26□□□□□ -2.61
NUP54-215ENST00000514313 IQGAP1P46940 1657 aa-1.26□□□□□ -2.61
NUP54-215ENST00000514313 H3BUX3 64 aa-1.26□□□□□ -2.61
NUP54-215ENST00000514313 TOP2AP11388 1531 aaKnown RBP-1.26□□□□□ -2.61
NUP54-215ENST00000514313 DUOX1Q9NRD9 1551 aa-1.26□□□□□ -2.61
NUP54-215ENST00000514313 SMIM5Q71RC9 77 aa-1.27□□□□□ -2.61
NUP54-215ENST00000514313 A0A087WWC5 75 aa-1.28□□□□□ -2.61
NUP54-215ENST00000514313 CMC2Q9NRP2 79 aa-1.28□□□□□ -2.61
NUP54-215ENST00000514313 EFCAB5A4FU69 1503 aa-1.29□□□□□ -2.62
NUP54-215ENST00000514313 ABCC8Q09428 1581 aa-1.3□□□□□ -2.62
NUP54-215ENST00000514313 ATP7AQ04656 1500 aa-1.3□□□□□ -2.62
NUP54-215ENST00000514313 FANCD2Q9BXW9 1451 aa-1.3□□□□□ -2.62
NUP54-215ENST00000514313 RPL39P62891 51 aaKnown RBP-1.3□□□□□ -2.62
NUP54-215ENST00000514313 SAMD9LQ8IVG5 1584 aa-1.3□□□□□ -2.62
NUP54-215ENST00000514313 APELAP0DMC3 54 aa-1.31□□□□□ -2.62
NUP54-215ENST00000514313 RPL39LQ96EH5 51 aaKnown RBP-1.33□□□□□ -2.62
NUP54-215ENST00000514313 MROH2BQ7Z745 1585 aa-1.34□□□□□ -2.62
NUP54-215ENST00000514313 A0A096LPF7 62 aa-1.34□□□□□ -2.62
NUP54-215ENST00000514313 HTN3P15516 51 aa-1.34□□□□□ -2.62
NUP54-215ENST00000514313 PRCDQ00LT1 54 aa-1.39□□□□□ -2.63
NUP54-215ENST00000514313 TMEM167AQ8TBQ9 72 aa-1.41□□□□□ -2.64
NUP54-215ENST00000514313 K7EIM0 57 aa-1.42□□□□□ -2.64
NUP54-215ENST00000514313 Q9Y3F1 56 aa-1.42□□□□□ -2.64
NUP54-215ENST00000514313 ARHGAP5-AS1Q96IT6 56 aa-1.43□□□□□ -2.64
NUP54-215ENST00000514313 SNRPGP15A8MWD9 76 aa-1.44□□□□□ -2.64
NUP54-215ENST00000514313 H3BSH0 61 aa-1.44□□□□□ -2.64
NUP54-215ENST00000514313 IQGAP2Q13576 1575 aa-1.51□□□□□ -2.65
NUP54-215ENST00000514313 COX14Q96I36 57 aa-1.51□□□□□ -2.65
NUP54-215ENST00000514313 SMIM31A0A1B0GVY4 71 aa-1.53□□□□□ -2.65
NUP54-215ENST00000514313 TOMM5Q8N4H5 51 aa-1.53□□□□□ -2.65
NUP54-215ENST00000514313 SNRPGP62308 76 aaKnown RBP-1.55□□□□□ -2.66
NUP54-215ENST00000514313 RPL39P5Q59GN2 51 aa-1.58□□□□□ -2.66
NUP54-215ENST00000514313 DEFB108AA8MXU0 73 aa-1.59□□□□□ -2.66
NUP54-215ENST00000514313 DEFB108BQ8NET1 73 aa-1.6□□□□□ -2.67
NUP54-215ENST00000514313 STATHP02808 62 aa-1.61□□□□□ -2.67
NUP54-215ENST00000514313 GCC2Q8IWJ2 1684 aa-1.64□□□□□ -2.67
Retrieved 78 of 20,778 RNA–protein pairs in 62.2 ms