RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 MT1EP04732 61 aa3.49□□□□□ -1.85
VCL-204ENST00000472585 SMIM26A0A096LP01 95 aa3.48□□□□□ -1.85
VCL-204ENST00000472585 SPRR5A0A1B0GTR4 108 aa3.47□□□□□ -1.85
VCL-204ENST00000472585 SPANXA2-OT1Q8N9U9 137 aa3.47□□□□□ -1.85
VCL-204ENST00000472585 LCE1FQ5T754 118 aa3.43□□□□□ -1.86
VCL-204ENST00000472585 DMAC1Q96GE9 116 aa3.41□□□□□ -1.86
VCL-204ENST00000472585 NDUFAF8A1L188 74 aa3.4□□□□□ -1.87
VCL-204ENST00000472585 PP632Q6XCG6 107 aa3.39□□□□□ -1.87
VCL-204ENST00000472585 MT1GP13640 62 aa3.38□□□□□ -1.87
VCL-204ENST00000472585 Q1T7F1 81 aa3.38□□□□□ -1.87
VCL-204ENST00000472585 KRTAP5-4Q6L8H1 288 aa3.37□□□□□ -1.87
VCL-204ENST00000472585 KRTAP19-5Q3LI72 72 aa3.35□□□□□ -1.87
VCL-204ENST00000472585 KRTAP13-4Q3LI77 160 aa3.35□□□□□ -1.87
VCL-204ENST00000472585 PRAC1Q96KF2 57 aa3.35□□□□□ -1.87
VCL-204ENST00000472585 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
VCL-204ENST00000472585 COA5Q86WW8 74 aa3.34□□□□□ -1.87
VCL-204ENST00000472585 MT1MQ8N339 61 aa3.34□□□□□ -1.87
VCL-204ENST00000472585 V9GYY9 64 aa3.34□□□□□ -1.87
VCL-204ENST00000472585 ACYP2P14621 99 aa3.33□□□□□ -1.88
VCL-204ENST00000472585 MT1LQ93083 61 aa3.3□□□□□ -1.88
VCL-204ENST00000472585 PRO0628Q9UI54 55 aa3.3□□□□□ -1.88
VCL-204ENST00000472585 CAMK2N1Q7Z7J9 78 aa3.28□□□□□ -1.88
VCL-204ENST00000472585 A0A0D9SG42 100 aa3.27□□□□□ -1.89
VCL-204ENST00000472585 LINC01558Q9Y6Z2 57 aa3.27□□□□□ -1.89
VCL-204ENST00000472585 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
VCL-204ENST00000472585 PSPHP1O15172 72 aa3.26□□□□□ -1.89
VCL-204ENST00000472585 LCE3CQ5T5A8 94 aa3.26□□□□□ -1.89
VCL-204ENST00000472585 BRK1Q8WUW1 75 aa3.25□□□□□ -1.89
VCL-204ENST00000472585 PRR15LQ9BU68 103 aa3.24□□□□□ -1.89
VCL-204ENST00000472585 CHKB-CPT1BH3BT56 60 aa3.23□□□□□ -1.89
VCL-204ENST00000472585 KRTAP20-2Q3LI61 65 aa3.22□□□□□ -1.89
VCL-204ENST00000472585 SPTSSBQ8NFR3 76 aa3.21□□□□□ -1.9
VCL-204ENST00000472585 CDC42SE1Q9NRR8 79 aa3.17□□□□□ -1.9
VCL-204ENST00000472585 A6NED7 52 aa3.16□□□□□ -1.9
VCL-204ENST00000472585 A8MU10 97 aa3.16□□□□□ -1.9
VCL-204ENST00000472585 A0A1B0GU69 56 aa3.13□□□□□ -1.91
VCL-204ENST00000472585 KRTAP12-4P60329 112 aa3.13□□□□□ -1.91
VCL-204ENST00000472585 C10orf95Q9H7T3 257 aa3.13□□□□□ -1.91
VCL-204ENST00000472585 LCE3AQ5TA76 89 aa3.12□□□□□ -1.91
VCL-204ENST00000472585 KRTAP5-1Q6L8H4 278 aa3.12□□□□□ -1.91
VCL-204ENST00000472585 KRTAP5-5Q701N2 237 aaPredicted RBP3.12□□□□□ -1.91
VCL-204ENST00000472585 AHNAKQ09666 5890 aaKnown RBP3.11□□□□□ -1.91
VCL-204ENST00000472585 KRTAP12-1P59990 96 aa3.1□□□□□ -1.91
VCL-204ENST00000472585 SEC61GP60059 68 aa3.1□□□□□ -1.91
VCL-204ENST00000472585 SPATA8Q6RVD6 105 aa3.1□□□□□ -1.91
VCL-204ENST00000472585 UQCR11O14957 56 aa3.08□□□□□ -1.92
VCL-204ENST00000472585 SPINT4Q6UDR6 99 aa3.08□□□□□ -1.92
VCL-204ENST00000472585 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
VCL-204ENST00000472585 PMAIP1Q13794 54 aa3.07□□□□□ -1.92
VCL-204ENST00000472585 A0A1B0GU33 70 aa3.05□□□□□ -1.92
VCL-204ENST00000472585 MIR22HGQ0VDD5 57 aa3.05□□□□□ -1.92
VCL-204ENST00000472585 KTN1-AS1Q86SY8 53 aa3.04□□□□□ -1.92
VCL-204ENST00000472585 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
VCL-204ENST00000472585 SYNE1Q8NF91 8797 aaKnown RBP3.02□□□□□ -1.93
VCL-204ENST00000472585 KRTAP5-8O75690 187 aa2.97□□□□□ -1.93
VCL-204ENST00000472585 LCE3EQ5T5B0 92 aa2.97□□□□□ -1.93
VCL-204ENST00000472585 KRTAP12-3P60328 96 aa2.96□□□□□ -1.94
VCL-204ENST00000472585 TNP1P09430 55 aa2.95□□□□□ -1.94
VCL-204ENST00000472585 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
VCL-204ENST00000472585 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.95
VCL-204ENST00000472585 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
VCL-204ENST00000472585 K7ERS5 55 aa2.86□□□□□ -1.95
VCL-204ENST00000472585 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
VCL-204ENST00000472585 ROMO1P60602 79 aa2.81□□□□□ -1.96
VCL-204ENST00000472585 KRTAP25-1Q3LHN0 102 aa2.79□□□□□ -1.96
VCL-204ENST00000472585 MT1AP04731 61 aa2.77□□□□□ -1.97
VCL-204ENST00000472585 KRTAP6-2Q3LI66 62 aa2.73□□□□□ -1.97
VCL-204ENST00000472585 LCE1CQ5T751 118 aa2.42□□□□□ -2.02
VCL-204ENST00000472585 LCE1BQ5T7P3 118 aa2.42□□□□□ -2.02
VCL-204ENST00000472585 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
VCL-204ENST00000472585 LUZP6Q538Z0 58 aa2.28□□□□□ -2.04
VCL-204ENST00000472585 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
VCL-204ENST00000472585 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
VCL-204ENST00000472585 INE1O15225 51 aa1.98□□□□□ -2.09
VCL-204ENST00000472585 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
VCL-204ENST00000472585 KRTAP21-1Q3LI58 79 aa1.63□□□□□ -2.15
VCL-204ENST00000472585 PRM1P04553 51 aa1.47□□□□□ -2.17
VCL-204ENST00000472585 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 123.2 ms