RNA–Protein interactions for RNA: ENST00000259605.10

RNF38-201, Transcript of ring finger protein 38, humanhuman

TSL 1 (best) BASIC

Gene RNF38, Length 5,012 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38-201ENST00000259605 MT3P25713 68 aa1.41□□□□□ -2.18
RNF38-201ENST00000259605 VPS13DQ5THJ4 4388 aa1.41□□□□□ -2.18
RNF38-201ENST00000259605 KRTAP19-3Q7Z4W3 81 aa1.4□□□□□ -2.18
RNF38-201ENST00000259605 UBR4Q5T4S7 5183 aa1.39□□□□□ -2.19
RNF38-201ENST00000259605 HSPG2P98160 4391 aa1.39□□□□□ -2.19
RNF38-201ENST00000259605 KRTAP19-6Q3LI70 58 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 KRTAP2-2Q9BYT5 123 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 KRTAP2-1Q9BYU5 128 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 PKHD1P08F94 4074 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 GPR98Q8WXG9 6306 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 LCE3DQ9BYE3 92 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 VPS13BQ7Z7G8 4022 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 FAT1Q14517 4588 aa1.38□□□□□ -2.19
RNF38-201ENST00000259605 DNAH5Q8TE73 4624 aa1.37□□□□□ -2.19
RNF38-201ENST00000259605 LCE1FQ5T754 118 aa1.37□□□□□ -2.19
RNF38-201ENST00000259605 FRAS1Q86XX4 4008 aa1.36□□□□□ -2.19
RNF38-201ENST00000259605 APOBP04114 4563 aaKnown RBP1.36□□□□□ -2.19
RNF38-201ENST00000259605 RNF213Q63HN8 5207 aa1.36□□□□□ -2.19
RNF38-201ENST00000259605 LCE3EQ5T5B0 92 aa1.36□□□□□ -2.19
RNF38-201ENST00000259605 LCE1AQ5T7P2 110 aa1.36□□□□□ -2.19
RNF38-201ENST00000259605 KRTAP5-8O75690 187 aa1.35□□□□□ -2.19
RNF38-201ENST00000259605 KRTAP4-4Q9BYR3 166 aa1.34□□□□□ -2.19
RNF38-201ENST00000259605 STARD9Q9P2P6 4700 aa1.34□□□□□ -2.19
RNF38-201ENST00000259605 LCE1BQ5T7P3 118 aa1.34□□□□□ -2.19
RNF38-201ENST00000259605 MT1BP07438 61 aa1.34□□□□□ -2.2
RNF38-201ENST00000259605 HMCN2Q8NDA2 5059 aa1.33□□□□□ -2.2
RNF38-201ENST00000259605 FAT4Q6V0I7 4981 aa1.33□□□□□ -2.2
RNF38-201ENST00000259605 MT1XP80297 61 aa1.33□□□□□ -2.2
RNF38-201ENST00000259605 MT1LQ93083 61 aa1.33□□□□□ -2.2
RNF38-201ENST00000259605 NEBP20929 6669 aa1.33□□□□□ -2.2
RNF38-201ENST00000259605 DNAH8Q96JB1 4490 aa1.32□□□□□ -2.2
RNF38-201ENST00000259605 SYNE2Q8WXH0 6885 aaKnown RBP1.27□□□□□ -2.21
RNF38-201ENST00000259605 MT1EP04732 61 aa1.27□□□□□ -2.21
RNF38-201ENST00000259605 MT1MQ8N339 61 aa1.27□□□□□ -2.21
RNF38-201ENST00000259605 SYNE1Q8NF91 8797 aaKnown RBP1.27□□□□□ -2.21
RNF38-201ENST00000259605 LCE1CQ5T751 118 aa1.26□□□□□ -2.21
RNF38-201ENST00000259605 LCE1EQ5T753 118 aa1.26□□□□□ -2.21
RNF38-201ENST00000259605 SSPOA2VEC9 5147 aa1.26□□□□□ -2.21
RNF38-201ENST00000259605 MUC17Q685J3 4493 aa1.25□□□□□ -2.21
RNF38-201ENST00000259605 KRTAP5-11Q6L8G4 156 aa1.25□□□□□ -2.21
RNF38-201ENST00000259605 TNXBP22105 4242 aa1.23□□□□□ -2.21
RNF38-201ENST00000259605 PKD1P98161 4303 aa1.23□□□□□ -2.21
RNF38-201ENST00000259605 MT1AP04731 61 aa1.23□□□□□ -2.21
RNF38-201ENST00000259605 MACF1Q9UPN3 7388 aaKnown RBP1.22□□□□□ -2.21
RNF38-201ENST00000259605 FSIP2Q5CZC0 6907 aa1.19□□□□□ -2.22
RNF38-201ENST00000259605 MUC2Q02817 5179 aa1.18□□□□□ -2.22
RNF38-201ENST00000259605 KRTAP5-1Q6L8H4 278 aa1.15□□□□□ -2.23
RNF38-201ENST00000259605 USH2AO75445 5202 aa1.15□□□□□ -2.23
RNF38-201ENST00000259605 KRTAP19-2Q3LHN2 52 aa1.11□□□□□ -2.23
RNF38-201ENST00000259605 KRTAP5-5Q701N2 237 aaPredicted RBP1.1□□□□□ -2.23
RNF38-201ENST00000259605 PRM1P04553 51 aa1.09□□□□□ -2.24
RNF38-201ENST00000259605 HMCN1Q96RW7 5635 aa1.09□□□□□ -2.24
RNF38-201ENST00000259605 OBSCNQ5VST9 7968 aa1.08□□□□□ -2.24
RNF38-201ENST00000259605 AHNAKQ09666 5890 aaKnown RBP1.08□□□□□ -2.24
RNF38-201ENST00000259605 KRTAP6-2Q3LI66 62 aa1.08□□□□□ -2.24
RNF38-201ENST00000259605 KRTAP5-7Q6L8G8 165 aa1.06□□□□□ -2.24
RNF38-201ENST00000259605 KRTAP19-7Q3SYF9 63 aa1.05□□□□□ -2.24
RNF38-201ENST00000259605 FCGBPQ9Y6R7 5405 aaPredicted RBP1.05□□□□□ -2.24
RNF38-201ENST00000259605 KRTAP4-3Q9BYR4 195 aa1.05□□□□□ -2.24
RNF38-201ENST00000259605 KMT2DO14686 5537 aa1.03□□□□□ -2.24
RNF38-201ENST00000259605 MUC5BQ9HC84 5762 aaPredicted RBP1.02□□□□□ -2.25
RNF38-201ENST00000259605 MUC12Q9UKN1 5478 aa1.02□□□□□ -2.25
RNF38-201ENST00000259605 AHNAK2Q8IVF2 5795 aa1.01□□□□□ -2.25
RNF38-201ENST00000259605 LPAP08519 4548 aa1.01□□□□□ -2.25
RNF38-201ENST00000259605 KRTAP6-1Q3LI64 71 aa1□□□□□ -2.25
RNF38-201ENST00000259605 FLGP20930 4061 aaPredicted RBP0.99□□□□□ -2.25
RNF38-201ENST00000259605 KRTAP9-6A8MVA2 160 aa0.99□□□□□ -2.25
RNF38-201ENST00000259605 KRTAP5-10Q6L8G5 202 aa0.99□□□□□ -2.25
RNF38-201ENST00000259605 MDN1Q9NU22 5596 aa0.97□□□□□ -2.25
RNF38-201ENST00000259605 KRTAP20-2Q3LI61 65 aa0.96□□□□□ -2.26
RNF38-201ENST00000259605 DSTQ03001 7570 aaKnown RBP0.96□□□□□ -2.26
RNF38-201ENST00000259605 MUC19Q7Z5P9 8384 aa0.95□□□□□ -2.26
RNF38-201ENST00000259605 MUC5ACP98088 5654 aa0.84□□□□□ -2.27
RNF38-201ENST00000259605 PHGR1C9JFL3 82 aa0.84□□□□□ -2.28
RNF38-201ENST00000259605 KRTAP21-1Q3LI58 79 aa0.67□□□□□ -2.3
RNF38-201ENST00000259605 KRTAP21-2Q3LI59 83 aa0.6□□□□□ -2.31
RNF38-201ENST00000259605 MUC16Q8WXI7 14507 aa0.45□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 91 ms