RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ACYP2	P14621	99 aa		5.99	□□□□□ -1.45
CLN6-223	ENST00000637823	KRTAP3-1	Q9BYR8	98 aa		5.97	□□□□□ -1.45
CLN6-223	ENST00000637823	KRTAP9-6	A0A140TA67	174 aa		5.93	□□□□□ -1.46
CLN6-223	ENST00000637823	SERP1	Q9Y6X1	66 aa		5.93	□□□□□ -1.46
CLN6-223	ENST00000637823	KRTAP9-2	Q9BYQ4	174 aa		5.92	□□□□□ -1.46
CLN6-223	ENST00000637823	H1FX-AS1	Q4G0G2	97 aa		5.91	□□□□□ -1.46
CLN6-223	ENST00000637823	COA5	Q86WW8	74 aa		5.91	□□□□□ -1.46
CLN6-223	ENST00000637823	RPS28	P62857	69 aa	Known RBP	5.89	□□□□□ -1.47
CLN6-223	ENST00000637823	CHKB-CPT1B	H3BT56	60 aa		5.86	□□□□□ -1.47
CLN6-223	ENST00000637823	KRTAP19-2	Q3LHN2	52 aa		5.86	□□□□□ -1.47
CLN6-223	ENST00000637823		S4R3F8	94 aa		5.83	□□□□□ -1.48
CLN6-223	ENST00000637823	SPTSSB	Q8NFR3	76 aa		5.81	□□□□□ -1.48
CLN6-223	ENST00000637823	LCA10	Q71F78	164 aa		5.8	□□□□□ -1.48
CLN6-223	ENST00000637823	FAT4	Q6V0I7	4981 aa		5.79	□□□□□ -1.48
CLN6-223	ENST00000637823	SMIM26	A0A096LP01	95 aa		5.76	□□□□□ -1.49
CLN6-223	ENST00000637823	MUC2	Q02817	5179 aa		5.75	□□□□□ -1.49
CLN6-223	ENST00000637823	FLG	P20930	4061 aa	Predicted RBP	5.74	□□□□□ -1.49
CLN6-223	ENST00000637823	CSAG1	Q6PB30	78 aa		5.73	□□□□□ -1.49
CLN6-223	ENST00000637823		V9GYY9	64 aa		5.69	□□□□□ -1.5
CLN6-223	ENST00000637823		Q1T7F1	81 aa		5.68	□□□□□ -1.5
CLN6-223	ENST00000637823	LINC01558	Q9Y6Z2	57 aa		5.67	□□□□□ -1.5
CLN6-223	ENST00000637823	MT1H	P80294	61 aa		5.65	□□□□□ -1.5
CLN6-223	ENST00000637823		M0R2T5	61 aa		5.61	□□□□□ -1.51
CLN6-223	ENST00000637823	SEC61G	P60059	68 aa		5.61	□□□□□ -1.51
CLN6-223	ENST00000637823		A0A1B0GU69	56 aa		5.6	□□□□□ -1.51
CLN6-223	ENST00000637823		H0YAA0	97 aa		5.59	□□□□□ -1.51
CLN6-223	ENST00000637823	PRR15L	Q9BU68	103 aa		5.59	□□□□□ -1.51
CLN6-223	ENST00000637823	PSPHP1	O15172	72 aa		5.55	□□□□□ -1.52
CLN6-223	ENST00000637823	ADM2	Q7Z4H4	148 aa		5.55	□□□□□ -1.52
CLN6-223	ENST00000637823	KRTAP10-6	P60371	365 aa	Predicted RBP	5.52	□□□□□ -1.53
CLN6-223	ENST00000637823		Q5VV11	94 aa		5.5	□□□□□ -1.53
CLN6-223	ENST00000637823		P0C880	135 aa		5.49	□□□□□ -1.53
CLN6-223	ENST00000637823		A0A1B0GU33	70 aa		5.47	□□□□□ -1.53
CLN6-223	ENST00000637823	FSIP2	Q5CZC0	6907 aa		5.46	□□□□□ -1.54
CLN6-223	ENST00000637823	CRCT1	Q9UGL9	99 aa		5.45	□□□□□ -1.54
CLN6-223	ENST00000637823	KRTAP9-8	Q9BYQ0	159 aa		5.44	□□□□□ -1.54
CLN6-223	ENST00000637823	UQCR11	O14957	56 aa		5.42	□□□□□ -1.54
CLN6-223	ENST00000637823	MT2A	P02795	61 aa		5.41	□□□□□ -1.54
CLN6-223	ENST00000637823	CRIPT	Q9P021	101 aa		5.41	□□□□□ -1.54
CLN6-223	ENST00000637823		A6NED7	52 aa		5.39	□□□□□ -1.55
CLN6-223	ENST00000637823		M0QZ58	72 aa		5.39	□□□□□ -1.55
CLN6-223	ENST00000637823	KRTAP10-10	P60014	251 aa		5.39	□□□□□ -1.55
CLN6-223	ENST00000637823	KRTAP23-1	A1A580	65 aa		5.38	□□□□□ -1.55
CLN6-223	ENST00000637823	MT1F	P04733	61 aa		5.37	□□□□□ -1.55
CLN6-223	ENST00000637823		R4GN34	69 aa		5.37	□□□□□ -1.55
CLN6-223	ENST00000637823	MIR22HG	Q0VDD5	57 aa		5.35	□□□□□ -1.55
CLN6-223	ENST00000637823	SPATA8	Q6RVD6	105 aa		5.35	□□□□□ -1.55
CLN6-223	ENST00000637823	KRTAP13-4	Q3LI77	160 aa		5.34	□□□□□ -1.55
CLN6-223	ENST00000637823	CDC42SE1	Q9NRR8	79 aa		5.29	□□□□□ -1.56
CLN6-223	ENST00000637823	SPRR2G	Q9BYE4	73 aa		5.28	□□□□□ -1.56
CLN6-223	ENST00000637823	KRTAP9-7	A8MTY7	169 aa		5.26	□□□□□ -1.57
CLN6-223	ENST00000637823	KRTAP9-3	Q9BYQ3	159 aa		5.26	□□□□□ -1.57
CLN6-223	ENST00000637823		A8MU10	97 aa		5.25	□□□□□ -1.57
CLN6-223	ENST00000637823	KRTAP19-1	Q8IUB9	90 aa		5.25	□□□□□ -1.57
CLN6-223	ENST00000637823	BRK1	Q8WUW1	75 aa		5.25	□□□□□ -1.57
CLN6-223	ENST00000637823		A0A0D9SG42	100 aa		5.24	□□□□□ -1.57
CLN6-223	ENST00000637823	LINC01554	Q52M75	96 aa		5.24	□□□□□ -1.57
CLN6-223	ENST00000637823		A6NN06	94 aa		5.19	□□□□□ -1.58
CLN6-223	ENST00000637823	KRTAP12-1	P59990	96 aa		5.16	□□□□□ -1.58
CLN6-223	ENST00000637823	KRTAP19-8	Q3LI54	63 aa		5.16	□□□□□ -1.58
CLN6-223	ENST00000637823		K7ERS5	55 aa		5.15	□□□□□ -1.59
CLN6-223	ENST00000637823	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.14	□□□□□ -1.59
CLN6-223	ENST00000637823	KRTAP19-4	Q3LI73	84 aa		5.14	□□□□□ -1.59
CLN6-223	ENST00000637823	SPINT4	Q6UDR6	99 aa		5.14	□□□□□ -1.59
CLN6-223	ENST00000637823	KRTAP12-2	P59991	146 aa		5.12	□□□□□ -1.59
CLN6-223	ENST00000637823	PLAC4	Q8WY50	150 aa		5.11	□□□□□ -1.59
CLN6-223	ENST00000637823	PRO0628	Q9UI54	55 aa		5.11	□□□□□ -1.59
CLN6-223	ENST00000637823		A0A0A0MQY5	61 aa		5.09	□□□□□ -1.59
CLN6-223	ENST00000637823	MT1B	P07438	61 aa		5.07	□□□□□ -1.6
CLN6-223	ENST00000637823	CAMK2N1	Q7Z7J9	78 aa		5.02	□□□□□ -1.61
CLN6-223	ENST00000637823	PMAIP1	Q13794	54 aa		4.99	□□□□□ -1.61
CLN6-223	ENST00000637823	SSPO	A2VEC9	5147 aa		4.92	□□□□□ -1.62
CLN6-223	ENST00000637823	USH2A	O75445	5202 aa		4.91	□□□□□ -1.62
CLN6-223	ENST00000637823	ROMO1	P60602	79 aa		4.9	□□□□□ -1.63
CLN6-223	ENST00000637823	MT1X	P80297	61 aa		4.89	□□□□□ -1.63
CLN6-223	ENST00000637823	KRTAP10-5	P60370	271 aa		4.88	□□□□□ -1.63
CLN6-223	ENST00000637823	C10orf95	Q9H7T3	257 aa		4.88	□□□□□ -1.63
CLN6-223	ENST00000637823	PRO2289	Q9P1D8	64 aa		4.88	□□□□□ -1.63
CLN6-223	ENST00000637823	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.85	□□□□□ -1.63
CLN6-223	ENST00000637823	KRTAP19-6	Q3LI70	58 aa		4.84	□□□□□ -1.63
CLN6-223	ENST00000637823	SYNE2	Q8WXH0	6885 aa	Known RBP	4.8	□□□□□ -1.64
CLN6-223	ENST00000637823	TNP1	P09430	55 aa		4.77	□□□□□ -1.65
CLN6-223	ENST00000637823	KRTAP25-1	Q3LHN0	102 aa		4.77	□□□□□ -1.65
CLN6-223	ENST00000637823	MACF1	Q9UPN3	7388 aa	Known RBP	4.76	□□□□□ -1.65
CLN6-223	ENST00000637823	KTN1-AS1	Q86SY8	53 aa		4.73	□□□□□ -1.65
CLN6-223	ENST00000637823	KRTAP10-7	P60409	375 aa	Predicted RBP	4.67	□□□□□ -1.66
CLN6-223	ENST00000637823	KRTAP10-12	P60413	245 aa		4.65	□□□□□ -1.67
CLN6-223	ENST00000637823	PRAC1	Q96KF2	57 aa		4.64	□□□□□ -1.67
CLN6-223	ENST00000637823	LOC100996750	A0A140TA64	210 aa		4.61	□□□□□ -1.67
CLN6-223	ENST00000637823	KRTAP4-6	Q9BYQ5	205 aa		4.61	□□□□□ -1.67
CLN6-223	ENST00000637823	NEB	P20929	6669 aa		4.61	□□□□□ -1.67
CLN6-223	ENST00000637823	PP632	Q6XCG6	107 aa		4.59	□□□□□ -1.67
CLN6-223	ENST00000637823	KRTAP15-1	Q3LI76	137 aa		4.56	□□□□□ -1.68
CLN6-223	ENST00000637823	LCE3A	Q5TA76	89 aa		4.56	□□□□□ -1.68
CLN6-223	ENST00000637823	MUC12	Q9UKN1	5478 aa		4.55	□□□□□ -1.68
CLN6-223	ENST00000637823	KRTAP6-3	Q3LI67	103 aa		4.53	□□□□□ -1.68
CLN6-223	ENST00000637823	KRTAP20-1	Q3LI63	56 aa		4.51	□□□□□ -1.69
CLN6-223	ENST00000637823	KRTAP4-12	Q9BQ66	201 aa		4.51	□□□□□ -1.69
CLN6-223	ENST00000637823	KRTAP4-8	A0A0G2JLE6	195 aa		4.5	□□□□□ -1.69
CLN6-223	ENST00000637823	KRTAP4-8	Q9BYQ9	185 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms