RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 NBPF19A0A087WUL8 3843 aa0.95□□□□□ -2.26
VIM-210ENST00000637053 APCP25054 2843 aa0.94□□□□□ -2.26
VIM-210ENST00000637053 DNAH2Q9P225 4427 aa0.94□□□□□ -2.26
VIM-210ENST00000637053 VPS13AQ96RL7 3174 aa0.94□□□□□ -2.26
VIM-210ENST00000637053 ITPR1Q14643 2758 aa0.93□□□□□ -2.26
VIM-210ENST00000637053 TNP1P09430 55 aa0.93□□□□□ -2.26
VIM-210ENST00000637053 DEFB136Q30KP8 78 aa0.93□□□□□ -2.26
VIM-210ENST00000637053 KIAA1109Q2LD37 5005 aa0.93□□□□□ -2.26
VIM-210ENST00000637053 NBEAQ8NFP9 2946 aa0.93□□□□□ -2.26
VIM-210ENST00000637053 TLN2Q9Y4G6 2542 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 KMT2AQ03164 3969 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 DNAH10Q8IVF4 4471 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 FRYLO94915 3013 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 CDH23Q9H251 3354 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 ZANQ9Y493 2812 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 A0A096LNI7 61 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 M0R2T5 61 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 SPINK6Q6UWN8 80 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 DNAH14Q0VDD8 3507 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 ANK3Q12955 4377 aaKnown RBP0.92□□□□□ -2.26
VIM-210ENST00000637053 TENM1Q9UKZ4 2725 aa0.92□□□□□ -2.26
VIM-210ENST00000637053 NF1P21359 2839 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 DNHD1Q96M86 4753 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 KRTAP2-3P0C7H8 128 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 SPART-AS1P0CW21 52 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 KRTAP2-4Q9BYR9 128 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 KRTAP2-1Q9BYU5 128 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 FREM2Q5SZK8 3169 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 DMXL1Q9Y485 3027 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 PKHD1L1Q86WI1 4243 aa0.91□□□□□ -2.26
VIM-210ENST00000637053 DNAH3Q8TD57 4116 aa0.9□□□□□ -2.26
VIM-210ENST00000637053 LOC400499M0QZD8 3231 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 DEFB108BQ8NET1 73 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 HIVEP3Q5T1R4 2406 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 AKAP9Q99996 3911 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 TGP01266 2768 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 COL12A1Q99715 3063 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 CSMD1Q96PZ7 3565 aa0.9□□□□□ -2.27
VIM-210ENST00000637053 DNAH9Q9NYC9 4486 aa0.89□□□□□ -2.27
VIM-210ENST00000637053 SMR3AQ99954 134 aa0.89□□□□□ -2.27
VIM-210ENST00000637053 RYR3Q15413 4870 aa0.89□□□□□ -2.27
VIM-210ENST00000637053 DCHS2Q6V1P9 2916 aa0.89□□□□□ -2.27
VIM-210ENST00000637053 MUC2Q02817 5179 aa0.89□□□□□ -2.27
VIM-210ENST00000637053 ZNF469Q96JG9 3925 aaPredicted RBP0.89□□□□□ -2.27
VIM-210ENST00000637053 RYR1P21817 5038 aa0.89□□□□□ -2.27
VIM-210ENST00000637053 TNXBP22105 4242 aa0.88□□□□□ -2.27
VIM-210ENST00000637053 MGAM2Q2M2H8 2515 aa0.88□□□□□ -2.27
VIM-210ENST00000637053 ZZEF1O43149 2961 aa0.88□□□□□ -2.27
VIM-210ENST00000637053 BIRC6Q9NR09 4857 aa0.88□□□□□ -2.27
VIM-210ENST00000637053 C9orf92A6NGG3 77 aa0.88□□□□□ -2.27
VIM-210ENST00000637053 FAT3Q8TDW7 4589 aa0.88□□□□□ -2.27
VIM-210ENST00000637053 HUWE1Q7Z6Z7 4374 aaKnown RBP0.88□□□□□ -2.27
VIM-210ENST00000637053 NSD1Q96L73 2696 aaPredicted RBP0.88□□□□□ -2.27
VIM-210ENST00000637053 HSPG2P98160 4391 aa0.87□□□□□ -2.27
VIM-210ENST00000637053 SPENQ96T58 3664 aaKnown RBP0.87□□□□□ -2.27
VIM-210ENST00000637053 SMG1Q96Q15 3661 aaKnown RBP0.87□□□□□ -2.27
VIM-210ENST00000637053 HYDINQ4G0P3 5121 aa0.87□□□□□ -2.27
VIM-210ENST00000637053 DNAH7Q8WXX0 4024 aa0.87□□□□□ -2.27
VIM-210ENST00000637053 PKD1P98161 4303 aa0.87□□□□□ -2.27
VIM-210ENST00000637053 DEFB124Q8NES8 71 aa0.86□□□□□ -2.27
VIM-210ENST00000637053 APOBP04114 4563 aaKnown RBP0.86□□□□□ -2.27
VIM-210ENST00000637053 HIVEP1P15822 2718 aa0.86□□□□□ -2.27
VIM-210ENST00000637053 TACC2O95359 2948 aa0.85□□□□□ -2.27
VIM-210ENST00000637053 LRBAP50851 2863 aa0.85□□□□□ -2.27
VIM-210ENST00000637053 H3BNG1 76 aa0.85□□□□□ -2.27
VIM-210ENST00000637053 DEFB110Q30KQ9 67 aa0.85□□□□□ -2.27
VIM-210ENST00000637053 DNAH17Q9UFH2 4485 aa0.85□□□□□ -2.27
VIM-210ENST00000637053 MXRA5Q9NR99 2828 aa0.85□□□□□ -2.27
VIM-210ENST00000637053 MYO15AQ9UKN7 3530 aa0.84□□□□□ -2.27
VIM-210ENST00000637053 PLECQ15149 4684 aaKnown RBP0.84□□□□□ -2.27
VIM-210ENST00000637053 ITPR2Q14571 2701 aa0.84□□□□□ -2.27
VIM-210ENST00000637053 EPPK1P58107 5090 aaKnown RBP0.84□□□□□ -2.28
VIM-210ENST00000637053 KMT2CQ8NEZ4 4911 aaKnown RBP0.84□□□□□ -2.28
VIM-210ENST00000637053 TENM3Q9P273 2699 aa0.83□□□□□ -2.28
VIM-210ENST00000637053 NIPBLQ6KC79 2804 aaeCLIP0.83□□□□□ -2.283e-7■■□□□ 13.3
VIM-210ENST00000637053 WDFY3Q8IZQ1 3526 aa0.83□□□□□ -2.28
VIM-210ENST00000637053 FRAS1Q86XX4 4008 aa0.83□□□□□ -2.28
VIM-210ENST00000637053 DNAH6Q9C0G6 4158 aa0.82□□□□□ -2.28
VIM-210ENST00000637053 HECTD4Q9Y4D8 3996 aa0.82□□□□□ -2.28
VIM-210ENST00000637053 FLGP20930 4061 aaPredicted RBP0.82□□□□□ -2.28
VIM-210ENST00000637053 COL7A1Q02388 2944 aa0.82□□□□□ -2.28
VIM-210ENST00000637053 LAMA5O15230 3695 aa0.82□□□□□ -2.28
VIM-210ENST00000637053 MAP1AP78559 2803 aaPredicted RBP0.82□□□□□ -2.28
VIM-210ENST00000637053 ATMQ13315 3056 aa0.82□□□□□ -2.28
VIM-210ENST00000637053 SONP18583 2426 aaKnown RBP0.81□□□□□ -2.28
VIM-210ENST00000637053 TRIOO75962 3097 aa0.81□□□□□ -2.28
VIM-210ENST00000637053 DNAH1Q9P2D7 4330 aa0.81□□□□□ -2.28
VIM-210ENST00000637053 A0A096LPF7 62 aa0.81□□□□□ -2.28
VIM-210ENST00000637053 PRM1P04553 51 aa0.81□□□□□ -2.28
VIM-210ENST00000637053 ADGRG4Q8IZF6 3080 aa0.8□□□□□ -2.28
VIM-210ENST00000637053 FSIP2Q5CZC0 6907 aa0.8□□□□□ -2.28
VIM-210ENST00000637053 KRTAP20-1Q3LI63 56 aa0.8□□□□□ -2.28
VIM-210ENST00000637053 KRTAP8-1Q8IUC2 63 aa0.8□□□□□ -2.28
VIM-210ENST00000637053 U3KQA8 63 aa0.8□□□□□ -2.28
VIM-210ENST00000637053 ACANP16112 2415 aa0.8□□□□□ -2.28
VIM-210ENST00000637053 CUBNO60494 3623 aa0.79□□□□□ -2.28
VIM-210ENST00000637053 RYR2Q92736 4967 aa0.79□□□□□ -2.28
VIM-210ENST00000637053 DNAH5Q8TE73 4624 aa0.79□□□□□ -2.28
VIM-210ENST00000637053 GPR98Q8WXG9 6306 aa0.79□□□□□ -2.28
VIM-210ENST00000637053 CSMD2Q7Z408 3487 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms