RNA–Protein interactions for RNA: ENST00000636549.1

CACNA1A-227, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,792 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-227ENST00000636549 KRTAP3-2Q9BYR7 98 aa7.48□□□□□ -1.21
CACNA1A-227ENST00000636549 AKAP9Q99996 3911 aa7.43□□□□□ -1.22
CACNA1A-227ENST00000636549 SPRR2FQ96RM1 72 aa7.41□□□□□ -1.22
CACNA1A-227ENST00000636549 OTOGQ6ZRI0 2925 aa7.39□□□□□ -1.23
CACNA1A-227ENST00000636549 KRTAP10-4P60372 401 aaPredicted RBP7.31□□□□□ -1.24
CACNA1A-227ENST00000636549 KRTAP10-7P60409 375 aaPredicted RBP7.22□□□□□ -1.25
CACNA1A-227ENST00000636549 MT1HP80294 61 aa7.14□□□□□ -1.27
CACNA1A-227ENST00000636549 SPRR2EP22531 72 aa7.09□□□□□ -1.27
CACNA1A-227ENST00000636549 SPRR2BP35325 72 aa7.09□□□□□ -1.27
CACNA1A-227ENST00000636549 SPRR2AP35326 72 aa7.09□□□□□ -1.27
CACNA1A-227ENST00000636549 KRTAP4-1Q9BYQ7 146 aa7.09□□□□□ -1.28
CACNA1A-227ENST00000636549 KRTAP19-5Q3LI72 72 aa7.03□□□□□ -1.28
CACNA1A-227ENST00000636549 DNAH9Q9NYC9 4486 aa7.01□□□□□ -1.29
CACNA1A-227ENST00000636549 ZNF469Q96JG9 3925 aaPredicted RBP6.98□□□□□ -1.29
CACNA1A-227ENST00000636549 DNAH1Q9P2D7 4330 aa6.94□□□□□ -1.3
CACNA1A-227ENST00000636549 LCE3BQ5TA77 95 aa6.92□□□□□ -1.3
CACNA1A-227ENST00000636549 DNAH2Q9P225 4427 aa6.91□□□□□ -1.3
CACNA1A-227ENST00000636549 MT2AP02795 61 aa6.87□□□□□ -1.31
CACNA1A-227ENST00000636549 FRAS1Q86XX4 4008 aa6.86□□□□□ -1.31
CACNA1A-227ENST00000636549 KRTAP23-1A1A580 65 aa6.83□□□□□ -1.32
CACNA1A-227ENST00000636549 SPRR2DP22532 72 aa6.81□□□□□ -1.32
CACNA1A-227ENST00000636549 MT1FP04733 61 aa6.81□□□□□ -1.32
CACNA1A-227ENST00000636549 ANK2Q01484 3957 aa6.79□□□□□ -1.32
CACNA1A-227ENST00000636549 DNAH10Q8IVF4 4471 aa6.79□□□□□ -1.32
CACNA1A-227ENST00000636549 DNAH5Q8TE73 4624 aa6.73□□□□□ -1.33
CACNA1A-227ENST00000636549 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
CACNA1A-227ENST00000636549 VPS13BQ7Z7G8 4022 aa6.68□□□□□ -1.34
CACNA1A-227ENST00000636549 DNAH3Q8TD57 4116 aa6.68□□□□□ -1.34
CACNA1A-227ENST00000636549 MT1GP13640 62 aa6.66□□□□□ -1.34
CACNA1A-227ENST00000636549 DNAH8Q96JB1 4490 aa6.64□□□□□ -1.35
CACNA1A-227ENST00000636549 FAT2Q9NYQ8 4349 aa6.64□□□□□ -1.35
CACNA1A-227ENST00000636549 KMT2AQ03164 3969 aa6.64□□□□□ -1.35
CACNA1A-227ENST00000636549 PLECQ15149 4684 aaKnown RBP6.6□□□□□ -1.35
CACNA1A-227ENST00000636549 LCE2BO14633 110 aa6.59□□□□□ -1.36
CACNA1A-227ENST00000636549 SPRR2GQ9BYE4 73 aa6.55□□□□□ -1.36
CACNA1A-227ENST00000636549 DNAH11Q96DT5 4516 aa6.54□□□□□ -1.36
CACNA1A-227ENST00000636549 DNAH7Q8WXX0 4024 aa6.48□□□□□ -1.37
CACNA1A-227ENST00000636549 DNAH17Q9UFH2 4485 aa6.47□□□□□ -1.37
CACNA1A-227ENST00000636549 LYSTQ99698 3801 aa6.46□□□□□ -1.37
CACNA1A-227ENST00000636549 LRP1BQ9NZR2 4599 aa6.45□□□□□ -1.38
CACNA1A-227ENST00000636549 CMYA5Q8N3K9 4069 aa6.44□□□□□ -1.38
CACNA1A-227ENST00000636549 STARD9Q9P2P6 4700 aa6.42□□□□□ -1.38
CACNA1A-227ENST00000636549 PRKDCP78527 4128 aaKnown RBP6.41□□□□□ -1.38
CACNA1A-227ENST00000636549 SPRR5A0A1B0GTR4 108 aa6.4□□□□□ -1.39
CACNA1A-227ENST00000636549 FAT1Q14517 4588 aa6.4□□□□□ -1.39
CACNA1A-227ENST00000636549 VPS13DQ5THJ4 4388 aa6.37□□□□□ -1.39
CACNA1A-227ENST00000636549 KRTAP12-4P60329 112 aa6.37□□□□□ -1.39
CACNA1A-227ENST00000636549 KRTAP4-8A0A0G2JLE6 195 aa6.36□□□□□ -1.39
CACNA1A-227ENST00000636549 KRTAP4-8Q9BYQ9 185 aa6.36□□□□□ -1.39
CACNA1A-227ENST00000636549 DYNC2H1Q8NCM8 4307 aaKnown RBP6.36□□□□□ -1.39
CACNA1A-227ENST00000636549 MT4P47944 62 aa6.35□□□□□ -1.39
CACNA1A-227ENST00000636549 SACSQ9NZJ4 4579 aa6.31□□□□□ -1.4
CACNA1A-227ENST00000636549 LCE2CQ5TA81 110 aa6.3□□□□□ -1.4
CACNA1A-227ENST00000636549 LCE2DQ5TA82 110 aaPredicted RBP6.26□□□□□ -1.41
CACNA1A-227ENST00000636549 DNAH6Q9C0G6 4158 aa6.26□□□□□ -1.41
CACNA1A-227ENST00000636549 DYNC1H1Q14204 4646 aaKnown RBP6.23□□□□□ -1.41
CACNA1A-227ENST00000636549 KRTAP19-1Q8IUB9 90 aa6.23□□□□□ -1.41
CACNA1A-227ENST00000636549 DNHD1Q96M86 4753 aa6.19□□□□□ -1.42
CACNA1A-227ENST00000636549 KRTAP17-1Q9BYP8 105 aa6.15□□□□□ -1.43
CACNA1A-227ENST00000636549 RYR1P21817 5038 aa6.09□□□□□ -1.43
CACNA1A-227ENST00000636549 APOBP04114 4563 aaKnown RBP6.08□□□□□ -1.44
CACNA1A-227ENST00000636549 LCE3DQ9BYE3 92 aa6.07□□□□□ -1.44
CACNA1A-227ENST00000636549 LPAP08519 4548 aa6.07□□□□□ -1.44
CACNA1A-227ENST00000636549 MT1XP80297 61 aa6.07□□□□□ -1.44
CACNA1A-227ENST00000636549 LCE1BQ5T7P3 118 aa6.07□□□□□ -1.44
CACNA1A-227ENST00000636549 KRTAP4-7Q9BYR0 210 aa6.06□□□□□ -1.44
CACNA1A-227ENST00000636549 LCE3EQ5T5B0 92 aa6.02□□□□□ -1.45
CACNA1A-227ENST00000636549 FAT3Q8TDW7 4589 aa6□□□□□ -1.45
CACNA1A-227ENST00000636549 LCE1DQ5T752 114 aa5.94□□□□□ -1.46
CACNA1A-227ENST00000636549 MT1BP07438 61 aa5.91□□□□□ -1.46
CACNA1A-227ENST00000636549 KRTAP19-8Q3LI54 63 aa5.91□□□□□ -1.46
CACNA1A-227ENST00000636549 HECTD4Q9Y4D8 3996 aa5.91□□□□□ -1.46
CACNA1A-227ENST00000636549 KRTAP9-8Q9BYQ0 159 aa5.88□□□□□ -1.47
CACNA1A-227ENST00000636549 PKD1P98161 4303 aa5.87□□□□□ -1.47
CACNA1A-227ENST00000636549 LOC100996750A0A140TA64 210 aa5.86□□□□□ -1.47
CACNA1A-227ENST00000636549 HYDINQ4G0P3 5121 aa5.81□□□□□ -1.48
CACNA1A-227ENST00000636549 HSPG2P98160 4391 aa5.79□□□□□ -1.48
CACNA1A-227ENST00000636549 RYR2Q92736 4967 aa5.79□□□□□ -1.48
CACNA1A-227ENST00000636549 RYR3Q15413 4870 aa5.78□□□□□ -1.48
CACNA1A-227ENST00000636549 MYCBP2O75592 4640 aa5.78□□□□□ -1.48
CACNA1A-227ENST00000636549 PKHD1L1Q86WI1 4243 aa5.77□□□□□ -1.49
CACNA1A-227ENST00000636549 KRTAP9-3Q9BYQ3 159 aa5.75□□□□□ -1.49
CACNA1A-227ENST00000636549 LRP1Q07954 4544 aaKnown RBP5.75□□□□□ -1.49
CACNA1A-227ENST00000636549 KRTAP9-2Q9BYQ4 174 aa5.74□□□□□ -1.49
CACNA1A-227ENST00000636549 KRTAP4-3Q9BYR4 195 aa5.74□□□□□ -1.49
CACNA1A-227ENST00000636549 PKHD1P08F94 4074 aa5.73□□□□□ -1.49
CACNA1A-227ENST00000636549 PRM1P04553 51 aa5.72□□□□□ -1.49
CACNA1A-227ENST00000636549 LCE5AQ5TCM9 118 aa5.71□□□□□ -1.5
CACNA1A-227ENST00000636549 KRTAP19-3Q7Z4W3 81 aa5.7□□□□□ -1.5
CACNA1A-227ENST00000636549 KRTAP19-4Q3LI73 84 aa5.65□□□□□ -1.5
CACNA1A-227ENST00000636549 KIAA1109Q2LD37 5005 aa5.62□□□□□ -1.51
CACNA1A-227ENST00000636549 TNXBP22105 4242 aa5.57□□□□□ -1.52
CACNA1A-227ENST00000636549 MT1LQ93083 61 aa5.53□□□□□ -1.52
CACNA1A-227ENST00000636549 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
CACNA1A-227ENST00000636549 KRTAP19-6Q3LI70 58 aa5.51□□□□□ -1.53
CACNA1A-227ENST00000636549 KMT2CQ8NEZ4 4911 aaKnown RBP5.49□□□□□ -1.53
CACNA1A-227ENST00000636549 MT3P25713 68 aa5.49□□□□□ -1.53
CACNA1A-227ENST00000636549 MT1EP04732 61 aa5.47□□□□□ -1.53
CACNA1A-227ENST00000636549 FLGP20930 4061 aaPredicted RBP5.45□□□□□ -1.54
CACNA1A-227ENST00000636549 KRTAP9-6A0A140TA67 174 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms