RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 KRTAP13-4Q3LI77 160 aa6.21□□□□□ -1.42
TPM3-223ENST00000611659 KRTAP10-6P60371 365 aaPredicted RBP6.19□□□□□ -1.42
TPM3-223ENST00000611659 C10orf95Q9H7T3 257 aa6.17□□□□□ -1.42
TPM3-223ENST00000611659 TPRXLQ17RH7 258 aa6.17□□□□□ -1.42
TPM3-223ENST00000611659 S4R3F8 94 aa6.1□□□□□ -1.43
TPM3-223ENST00000611659 LRP1Q07954 4544 aaKnown RBP6.1□□□□□ -1.43
TPM3-223ENST00000611659 APOBP04114 4563 aaKnown RBP6.1□□□□□ -1.43
TPM3-223ENST00000611659 PKHD1L1Q86WI1 4243 aa6.09□□□□□ -1.43
TPM3-223ENST00000611659 KRTAP10-4P60372 401 aaPredicted RBP6.08□□□□□ -1.44
TPM3-223ENST00000611659 KRTAP10-8P60410 259 aa6.08□□□□□ -1.44
TPM3-223ENST00000611659 MYCBP2O75592 4640 aa6.06□□□□□ -1.44
TPM3-223ENST00000611659 KMT2CQ8NEZ4 4911 aaKnown RBP6.05□□□□□ -1.44
TPM3-223ENST00000611659 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
TPM3-223ENST00000611659 A0A1B0GVY2 172 aa6.04□□□□□ -1.44
TPM3-223ENST00000611659 NDUFAF8A1L188 74 aa6.03□□□□□ -1.44
TPM3-223ENST00000611659 HSPG2P98160 4391 aa5.98□□□□□ -1.45
TPM3-223ENST00000611659 XP32Q5T750 250 aa5.97□□□□□ -1.45
TPM3-223ENST00000611659 KRTAP15-1Q3LI76 137 aa5.96□□□□□ -1.45
TPM3-223ENST00000611659 RYR2Q92736 4967 aa5.96□□□□□ -1.45
TPM3-223ENST00000611659 KRTAP12-1P59990 96 aa5.94□□□□□ -1.46
TPM3-223ENST00000611659 FAT3Q8TDW7 4589 aa5.93□□□□□ -1.46
TPM3-223ENST00000611659 Q5VSD8 79 aa5.9□□□□□ -1.46
TPM3-223ENST00000611659 KRTAP17-1Q9BYP8 105 aa5.87□□□□□ -1.47
TPM3-223ENST00000611659 TNXBP22105 4242 aa5.86□□□□□ -1.47
TPM3-223ENST00000611659 KIAA1109Q2LD37 5005 aa5.82□□□□□ -1.48
TPM3-223ENST00000611659 LPAP08519 4548 aa5.82□□□□□ -1.48
TPM3-223ENST00000611659 M0QZ58 72 aa5.82□□□□□ -1.48
TPM3-223ENST00000611659 KRTAP21-3Q3LHN1 58 aa5.81□□□□□ -1.48
TPM3-223ENST00000611659 RYR3Q15413 4870 aa5.81□□□□□ -1.48
TPM3-223ENST00000611659 LRP2P98164 4655 aa5.76□□□□□ -1.49
TPM3-223ENST00000611659 RYR1P21817 5038 aa5.74□□□□□ -1.49
TPM3-223ENST00000611659 R4GN34 69 aa5.73□□□□□ -1.49
TPM3-223ENST00000611659 MT1HL1P0DM35 61 aa5.69□□□□□ -1.5
TPM3-223ENST00000611659 PLAC4Q8WY50 150 aa5.64□□□□□ -1.51
TPM3-223ENST00000611659 EPPK1P58107 5090 aaKnown RBP5.63□□□□□ -1.51
TPM3-223ENST00000611659 ABCA13Q86UQ4 5058 aa5.62□□□□□ -1.51
TPM3-223ENST00000611659 LCE2BO14633 110 aa5.61□□□□□ -1.51
TPM3-223ENST00000611659 LORP23490 312 aaPredicted RBP5.59□□□□□ -1.51
TPM3-223ENST00000611659 KRTAP4-5Q9BYR2 181 aa5.59□□□□□ -1.52
TPM3-223ENST00000611659 CAMK2N1Q7Z7J9 78 aa5.5□□□□□ -1.53
TPM3-223ENST00000611659 LUZP6Q538Z0 58 aa5.49□□□□□ -1.53
TPM3-223ENST00000611659 J3QL48 77 aa5.41□□□□□ -1.54
TPM3-223ENST00000611659 SEC61BP60468 96 aaKnown RBP5.41□□□□□ -1.54
TPM3-223ENST00000611659 PP632Q6XCG6 107 aa5.41□□□□□ -1.54
TPM3-223ENST00000611659 KRTAP4-1Q9BYQ7 146 aa5.4□□□□□ -1.54
TPM3-223ENST00000611659 MUC2Q02817 5179 aa5.4□□□□□ -1.54
TPM3-223ENST00000611659 A0A0A0MQY5 61 aa5.4□□□□□ -1.55
TPM3-223ENST00000611659 MUC17Q685J3 4493 aa5.33□□□□□ -1.56
TPM3-223ENST00000611659 HERC2O95714 4834 aa5.32□□□□□ -1.56
TPM3-223ENST00000611659 TNP1P09430 55 aa5.26□□□□□ -1.57
TPM3-223ENST00000611659 LCE2CQ5TA81 110 aa5.22□□□□□ -1.57
TPM3-223ENST00000611659 KRTAP19-2Q3LHN2 52 aa5.21□□□□□ -1.58
TPM3-223ENST00000611659 HERC1Q15751 4861 aa5.16□□□□□ -1.58
TPM3-223ENST00000611659 FAT4Q6V0I7 4981 aa5.12□□□□□ -1.59
TPM3-223ENST00000611659 SPRR5A0A1B0GTR4 108 aa5.09□□□□□ -1.59
TPM3-223ENST00000611659 PCLOQ9Y6V0 5065 aa5.09□□□□□ -1.6
TPM3-223ENST00000611659 KRTAP23-1A1A580 65 aa5.07□□□□□ -1.6
TPM3-223ENST00000611659 FLGP20930 4061 aaPredicted RBP5.04□□□□□ -1.6
TPM3-223ENST00000611659 BIRC6Q9NR09 4857 aa5.01□□□□□ -1.61
TPM3-223ENST00000611659 LCE2AQ5TA79 106 aaPredicted RBP5.01□□□□□ -1.61
TPM3-223ENST00000611659 RNF213Q63HN8 5207 aa5.01□□□□□ -1.61
TPM3-223ENST00000611659 M0R2T5 61 aa4.96□□□□□ -1.62
TPM3-223ENST00000611659 LCE3AQ5TA76 89 aa4.96□□□□□ -1.62
TPM3-223ENST00000611659 HMCN2Q8NDA2 5059 aa4.95□□□□□ -1.62
TPM3-223ENST00000611659 KRTAP19-1Q8IUB9 90 aa4.9□□□□□ -1.63
TPM3-223ENST00000611659 SPRR2GQ9BYE4 73 aa4.9□□□□□ -1.63
TPM3-223ENST00000611659 UBR4Q5T4S7 5183 aa4.88□□□□□ -1.63
TPM3-223ENST00000611659 KRTAP10-10P60014 251 aa4.8□□□□□ -1.64
TPM3-223ENST00000611659 PRO2289Q9P1D8 64 aa4.8□□□□□ -1.64
TPM3-223ENST00000611659 MT1HP80294 61 aa4.76□□□□□ -1.65
TPM3-223ENST00000611659 MT1FP04733 61 aa4.75□□□□□ -1.65
TPM3-223ENST00000611659 KRTAP8-1Q8IUC2 63 aa4.75□□□□□ -1.65
TPM3-223ENST00000611659 INE1O15225 51 aa4.71□□□□□ -1.66
TPM3-223ENST00000611659 MT2AP02795 61 aa4.71□□□□□ -1.66
TPM3-223ENST00000611659 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
TPM3-223ENST00000611659 KRTAP10-12P60413 245 aa4.66□□□□□ -1.66
TPM3-223ENST00000611659 KRTAP10-5P60370 271 aa4.65□□□□□ -1.66
TPM3-223ENST00000611659 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
TPM3-223ENST00000611659 MT1XP80297 61 aa4.63□□□□□ -1.67
TPM3-223ENST00000611659 KRTAP19-8Q3LI54 63 aa4.61□□□□□ -1.67
TPM3-223ENST00000611659 MT1BP07438 61 aa4.6□□□□□ -1.67
TPM3-223ENST00000611659 KRTAP10-7P60409 375 aaPredicted RBP4.58□□□□□ -1.68
TPM3-223ENST00000611659 USH2AO75445 5202 aa4.51□□□□□ -1.69
TPM3-223ENST00000611659 KMT2DO14686 5537 aa4.45□□□□□ -1.7
TPM3-223ENST00000611659 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
TPM3-223ENST00000611659 KRTAP4-6Q9BYQ5 205 aa4.44□□□□□ -1.7
TPM3-223ENST00000611659 KRTAP9-3Q9BYQ3 159 aa4.43□□□□□ -1.7
TPM3-223ENST00000611659 KRTAP19-5Q3LI72 72 aa4.43□□□□□ -1.7
TPM3-223ENST00000611659 LCE3CQ5T5A8 94 aa4.41□□□□□ -1.7
TPM3-223ENST00000611659 KRTAP9-6A8MVA2 160 aa4.3□□□□□ -1.72
TPM3-223ENST00000611659 KRTAP4-8A0A0G2JLE6 195 aa4.29□□□□□ -1.72
TPM3-223ENST00000611659 KRTAP4-8Q9BYQ9 185 aa4.29□□□□□ -1.72
TPM3-223ENST00000611659 KRTAP4-7Q9BYR0 210 aa4.23□□□□□ -1.73
TPM3-223ENST00000611659 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.21□□□□□ -1.73
TPM3-223ENST00000611659 FSIP2Q5CZC0 6907 aa4.2□□□□□ -1.74
TPM3-223ENST00000611659 KRTAP9-2Q9BYQ4 174 aa4.17□□□□□ -1.74
TPM3-223ENST00000611659 KRTAP9-6A0A140TA67 174 aa4.16□□□□□ -1.74
TPM3-223ENST00000611659 KRTAP2-3P0C7H8 128 aa4.15□□□□□ -1.74
TPM3-223ENST00000611659 KRTAP2-4Q9BYR9 128 aa4.15□□□□□ -1.74
TPM3-223ENST00000611659 KRTAP2-1Q9BYU5 128 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms