RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, human

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-223	ENST00000600523	LCA10	Q71F78	164 aa		6.19	□□□□□ -1.42
SRRM1-223	ENST00000600523	KLKP1	Q107X0	134 aa		6.18	□□□□□ -1.42
SRRM1-223	ENST00000600523	MT1F	P04733	61 aa		6.17	□□□□□ -1.42
SRRM1-223	ENST00000600523	NDUFC1	O43677	76 aa		6.15	□□□□□ -1.42
SRRM1-223	ENST00000600523	KRTAP9-6	A0A140TA67	174 aa		6.12	□□□□□ -1.43
SRRM1-223	ENST00000600523	CRCT1	Q9UGL9	99 aa		6.1	□□□□□ -1.43
SRRM1-223	ENST00000600523	SERP2	Q8N6R1	65 aa		6.08	□□□□□ -1.44
SRRM1-223	ENST00000600523	KRTAP9-3	Q9BYQ3	159 aa		6.08	□□□□□ -1.44
SRRM1-223	ENST00000600523	DMAC1	Q96GE9	116 aa		6.06	□□□□□ -1.44
SRRM1-223	ENST00000600523	C20orf197	Q8N268	126 aa		6.03	□□□□□ -1.44
SRRM1-223	ENST00000600523	SNURF	Q9Y675	71 aa		6.03	□□□□□ -1.44
SRRM1-223	ENST00000600523	ACYP2	P14621	99 aa		6.02	□□□□□ -1.45
SRRM1-223	ENST00000600523	FSIP2	Q5CZC0	6907 aa		6	□□□□□ -1.45
SRRM1-223	ENST00000600523		H0YAA0	97 aa		5.98	□□□□□ -1.45
SRRM1-223	ENST00000600523	SPTSSB	Q8NFR3	76 aa		5.97	□□□□□ -1.45
SRRM1-223	ENST00000600523	CRIPT	Q9P021	101 aa		5.96	□□□□□ -1.46
SRRM1-223	ENST00000600523	CHKB-CPT1B	H3BT56	60 aa		5.95	□□□□□ -1.46
SRRM1-223	ENST00000600523	SPANXA2-OT1	Q8N9U9	137 aa		5.95	□□□□□ -1.46
SRRM1-223	ENST00000600523	COX7C	P15954	63 aa		5.94	□□□□□ -1.46
SRRM1-223	ENST00000600523	ADM2	Q7Z4H4	148 aa		5.92	□□□□□ -1.46
SRRM1-223	ENST00000600523	PCP4	P48539	62 aa		5.91	□□□□□ -1.46
SRRM1-223	ENST00000600523	ANAPC13	Q9BS18	74 aa		5.89	□□□□□ -1.47
SRRM1-223	ENST00000600523	USH2A	O75445	5202 aa		5.88	□□□□□ -1.47
SRRM1-223	ENST00000600523	SPRR2G	Q9BYE4	73 aa		5.87	□□□□□ -1.47
SRRM1-223	ENST00000600523		Q5VV11	94 aa		5.85	□□□□□ -1.47
SRRM1-223	ENST00000600523	KRTAP19-1	Q8IUB9	90 aa		5.85	□□□□□ -1.47
SRRM1-223	ENST00000600523		R4GN34	69 aa		5.8	□□□□□ -1.48
SRRM1-223	ENST00000600523	KRTAP19-6	Q3LI70	58 aa		5.78	□□□□□ -1.48
SRRM1-223	ENST00000600523		H7BZZ5	65 aa		5.77	□□□□□ -1.49
SRRM1-223	ENST00000600523	KRTAP19-8	Q3LI54	63 aa		5.77	□□□□□ -1.49
SRRM1-223	ENST00000600523		P0C880	135 aa		5.75	□□□□□ -1.49
SRRM1-223	ENST00000600523	COA5	Q86WW8	74 aa		5.75	□□□□□ -1.49
SRRM1-223	ENST00000600523	SSPO	A2VEC9	5147 aa		5.74	□□□□□ -1.49
SRRM1-223	ENST00000600523		M0QZ58	72 aa		5.73	□□□□□ -1.49
SRRM1-223	ENST00000600523	MT1B	P07438	61 aa		5.71	□□□□□ -1.5
SRRM1-223	ENST00000600523	SEC61G	P60059	68 aa		5.7	□□□□□ -1.5
SRRM1-223	ENST00000600523	CYSTM1	Q9H1C7	97 aa		5.7	□□□□□ -1.5
SRRM1-223	ENST00000600523		A6NN06	94 aa		5.68	□□□□□ -1.5
SRRM1-223	ENST00000600523	CCDC179	H3BU77	68 aa		5.68	□□□□□ -1.5
SRRM1-223	ENST00000600523	PLAC4	Q8WY50	150 aa		5.68	□□□□□ -1.5
SRRM1-223	ENST00000600523	ATP5E	P56381	51 aa	Predicted RBP	5.67	□□□□□ -1.5
SRRM1-223	ENST00000600523	LINC01554	Q52M75	96 aa		5.66	□□□□□ -1.5
SRRM1-223	ENST00000600523	SERP1	Q9Y6X1	66 aa		5.66	□□□□□ -1.5
SRRM1-223	ENST00000600523	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.64	□□□□□ -1.51
SRRM1-223	ENST00000600523	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.63	□□□□□ -1.51
SRRM1-223	ENST00000600523	PRO2289	Q9P1D8	64 aa		5.6	□□□□□ -1.51
SRRM1-223	ENST00000600523		A0A0A0MQY5	61 aa		5.58	□□□□□ -1.52
SRRM1-223	ENST00000600523	KRTAP10-5	P60370	271 aa		5.58	□□□□□ -1.52
SRRM1-223	ENST00000600523	TMEM258	P61165	79 aa		5.56	□□□□□ -1.52
SRRM1-223	ENST00000600523	KRTAP9-7	A8MTY7	169 aa		5.53	□□□□□ -1.52
SRRM1-223	ENST00000600523		A0A1B0GU69	56 aa		5.52	□□□□□ -1.53
SRRM1-223	ENST00000600523		A0A1B0GU33	70 aa		5.49	□□□□□ -1.53
SRRM1-223	ENST00000600523	PRR15L	Q9BU68	103 aa		5.48	□□□□□ -1.53
SRRM1-223	ENST00000600523	MACF1	Q9UPN3	7388 aa	Known RBP	5.45	□□□□□ -1.54
SRRM1-223	ENST00000600523	MT1X	P80297	61 aa		5.42	□□□□□ -1.54
SRRM1-223	ENST00000600523	KRTAP13-4	Q3LI77	160 aa		5.42	□□□□□ -1.54
SRRM1-223	ENST00000600523	CAMK2N1	Q7Z7J9	78 aa		5.4	□□□□□ -1.54
SRRM1-223	ENST00000600523		A0A0D9SG42	100 aa		5.39	□□□□□ -1.55
SRRM1-223	ENST00000600523	SMIM26	A0A096LP01	95 aa		5.38	□□□□□ -1.55
SRRM1-223	ENST00000600523	SPATA8	Q6RVD6	105 aa		5.38	□□□□□ -1.55
SRRM1-223	ENST00000600523	KRTAP6-3	Q3LI67	103 aa		5.37	□□□□□ -1.55
SRRM1-223	ENST00000600523	LINC01558	Q9Y6Z2	57 aa		5.35	□□□□□ -1.55
SRRM1-223	ENST00000600523	KRTAP23-1	A1A580	65 aa		5.33	□□□□□ -1.56
SRRM1-223	ENST00000600523	SYNE2	Q8WXH0	6885 aa	Known RBP	5.32	□□□□□ -1.56
SRRM1-223	ENST00000600523	SPINT4	Q6UDR6	99 aa		5.32	□□□□□ -1.56
SRRM1-223	ENST00000600523	KRTAP12-2	P59991	146 aa		5.3	□□□□□ -1.56
SRRM1-223	ENST00000600523		V9GYY9	64 aa		5.28	□□□□□ -1.56
SRRM1-223	ENST00000600523	UQCR11	O14957	56 aa		5.25	□□□□□ -1.57
SRRM1-223	ENST00000600523	KRTAP12-1	P59990	96 aa		5.23	□□□□□ -1.57
SRRM1-223	ENST00000600523	KRTAP8-1	Q8IUC2	63 aa		5.22	□□□□□ -1.57
SRRM1-223	ENST00000600523		A8MU10	97 aa		5.21	□□□□□ -1.58
SRRM1-223	ENST00000600523	KRTAP5-9	P26371	169 aa		5.19	□□□□□ -1.58
SRRM1-223	ENST00000600523	KRTAP10-7	P60409	375 aa	Predicted RBP	5.17	□□□□□ -1.58
SRRM1-223	ENST00000600523	KRTAP10-12	P60413	245 aa		5.17	□□□□□ -1.58
SRRM1-223	ENST00000600523		Q1T7F1	81 aa		5.16	□□□□□ -1.58
SRRM1-223	ENST00000600523	SPRR2F	Q96RM1	72 aa		5.15	□□□□□ -1.59
SRRM1-223	ENST00000600523	PSPHP1	O15172	72 aa		5.13	□□□□□ -1.59
SRRM1-223	ENST00000600523	MIR22HG	Q0VDD5	57 aa		5.13	□□□□□ -1.59
SRRM1-223	ENST00000600523	RPS28	P62857	69 aa	Known RBP	5.12	□□□□□ -1.59
SRRM1-223	ENST00000600523	LOC100996750	A0A140TA64	210 aa		5.11	□□□□□ -1.59
SRRM1-223	ENST00000600523		K7ERS5	55 aa		5.11	□□□□□ -1.59
SRRM1-223	ENST00000600523	KRTAP4-6	Q9BYQ5	205 aa		5.11	□□□□□ -1.59
SRRM1-223	ENST00000600523	KRTAP4-8	A0A0G2JLE6	195 aa		5.1	□□□□□ -1.59
SRRM1-223	ENST00000600523	KRTAP4-8	Q9BYQ9	185 aa		5.1	□□□□□ -1.59
SRRM1-223	ENST00000600523	KMT2D	O14686	5537 aa		5.08	□□□□□ -1.6
SRRM1-223	ENST00000600523		A6NED7	52 aa		5.03	□□□□□ -1.6
SRRM1-223	ENST00000600523	TNP1	P09430	55 aa		5.02	□□□□□ -1.61
SRRM1-223	ENST00000600523	SPRR2E	P22531	72 aa		5.01	□□□□□ -1.61
SRRM1-223	ENST00000600523	SPRR2B	P35325	72 aa		5.01	□□□□□ -1.61
SRRM1-223	ENST00000600523	SPRR2A	P35326	72 aa		5.01	□□□□□ -1.61
SRRM1-223	ENST00000600523	MUC12	Q9UKN1	5478 aa		5.01	□□□□□ -1.61
SRRM1-223	ENST00000600523	NEB	P20929	6669 aa		5	□□□□□ -1.61
SRRM1-223	ENST00000600523	C10orf95	Q9H7T3	257 aa		4.96	□□□□□ -1.62
SRRM1-223	ENST00000600523	LCE1A	Q5T7P2	110 aa		4.92	□□□□□ -1.62
SRRM1-223	ENST00000600523	MDN1	Q9NU22	5596 aa		4.91	□□□□□ -1.62
SRRM1-223	ENST00000600523	KRTAP20-1	Q3LI63	56 aa		4.89	□□□□□ -1.63
SRRM1-223	ENST00000600523	SPRR2D	P22532	72 aa		4.85	□□□□□ -1.63
SRRM1-223	ENST00000600523	KRTAP25-1	Q3LHN0	102 aa		4.85	□□□□□ -1.63
SRRM1-223	ENST00000600523	KRTAP2-3	P0C7H8	128 aa		4.83	□□□□□ -1.64
SRRM1-223	ENST00000600523	KRTAP19-7	Q3SYF9	63 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms