RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-223ENST00000600523 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
SRRM1-223ENST00000600523 CCDC180Q9P1Z9 1646 aa27.59■■■□□ 2.01
SRRM1-223ENST00000600523 ABCC9O60706 1549 aa26.89■■□□□ 1.89
SRRM1-223ENST00000600523 DCAF8L2P0C7V8 631 aa26.06■■□□□ 1.76
SRRM1-223ENST00000600523 RB1CC1Q8TDY2 1594 aa25.96■■□□□ 1.75
SRRM1-223ENST00000600523 NACADO15069 1562 aa25.95■■□□□ 1.75
SRRM1-223ENST00000600523 ZCCHC6Q5VYS8 1495 aaKnown RBP25.9■■□□□ 1.74
SRRM1-223ENST00000600523 MYO15BQ96JP2 1530 aa25.81■■□□□ 1.72
SRRM1-223ENST00000600523 DCAF1Q9Y4B6 1507 aa25.74■■□□□ 1.71
SRRM1-223ENST00000600523 UNC13AQ9UPW8 1703 aa25.21■■□□□ 1.63
SRRM1-223ENST00000600523 SCRIBQ14160 1630 aa25.17■■□□□ 1.62
SRRM1-223ENST00000600523 PABPN1Q86U42 306 aaKnown RBP eCLIP25.15■■□□□ 1.62
SRRM1-223ENST00000600523 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
SRRM1-223ENST00000600523 SHROOM4Q9ULL8 1493 aa24.93■■□□□ 1.58
SRRM1-223ENST00000600523 DNAJC5BQ9UF47 199 aa24.46■■□□□ 1.51
SRRM1-223ENST00000600523 EIF4G1Q04637 1599 aaKnown RBP24.44■■□□□ 1.5
SRRM1-223ENST00000600523 CC2D2AQ9P2K1 1620 aa24.3■■□□□ 1.48
SRRM1-223ENST00000600523 CECR2Q9BXF3 1484 aa24.17■■□□□ 1.46
SRRM1-223ENST00000600523 BAZ1AQ9NRL2 1556 aaPredicted RBP24.13■■□□□ 1.45
SRRM1-223ENST00000600523 SMARCA4P51532 1647 aa24.08■■□□□ 1.45
SRRM1-223ENST00000600523 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
SRRM1-223ENST00000600523 ATAD2BQ9ULI0 1458 aa23.93■■□□□ 1.42
SRRM1-223ENST00000600523 NCAPD3P42695 1498 aa23.92■■□□□ 1.42
SRRM1-223ENST00000600523 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
SRRM1-223ENST00000600523 PEG3Q9GZU2 1588 aa23.84■■□□□ 1.41
SRRM1-223ENST00000600523 HMGXB3Q12766 1538 aa23.81■■□□□ 1.4
SRRM1-223ENST00000600523 BAZ1BQ9UIG0 1483 aaKnown RBP23.81■■□□□ 1.4
SRRM1-223ENST00000600523 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
SRRM1-223ENST00000600523 WIZO95785 1651 aa23.66■■□□□ 1.38
SRRM1-223ENST00000600523 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
SRRM1-223ENST00000600523 SUPT5HO00267 1087 aaKnown RBP23.31■■□□□ 1.32
SRRM1-223ENST00000600523 LAMC3Q9Y6N6 1575 aa23.29■■□□□ 1.32
SRRM1-223ENST00000600523 ERCC6Q03468 1493 aa23.26■■□□□ 1.31
SRRM1-223ENST00000600523 CADPSQ9ULU8 1353 aa23.26■■□□□ 1.31
SRRM1-223ENST00000600523 NESP48681 1621 aa23.24■■□□□ 1.31
SRRM1-223ENST00000600523 PDS5BQ9NTI5 1447 aa23.19■■□□□ 1.3
SRRM1-223ENST00000600523 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
SRRM1-223ENST00000600523 CFTRP13569 1480 aa23.11■■□□□ 1.29
SRRM1-223ENST00000600523 FANCD2Q9BXW9 1451 aa22.98■■□□□ 1.27
SRRM1-223ENST00000600523 KIF21AQ7Z4S6 1674 aa22.98■■□□□ 1.27
SRRM1-223ENST00000600523 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
SRRM1-223ENST00000600523 PRDM2Q13029 1718 aa22.92■■□□□ 1.26
SRRM1-223ENST00000600523 CUX2O14529 1486 aa22.92■■□□□ 1.26
SRRM1-223ENST00000600523 MRC2Q9UBG0 1479 aa22.89■■□□□ 1.25
SRRM1-223ENST00000600523 THOC2Q8NI27 1593 aaKnown RBP22.86■■□□□ 1.25
SRRM1-223ENST00000600523 WDR62O43379 1518 aa22.77■■□□□ 1.24
SRRM1-223ENST00000600523 ABCC8Q09428 1581 aa22.71■■□□□ 1.23
SRRM1-223ENST00000600523 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
SRRM1-223ENST00000600523 DNMBPQ6XZF7 1577 aa22.6■■□□□ 1.21
SRRM1-223ENST00000600523 TOPBP1Q92547 1522 aa22.6■■□□□ 1.21
SRRM1-223ENST00000600523 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
SRRM1-223ENST00000600523 CUX1P39880 1505 aa22.44■■□□□ 1.18
SRRM1-223ENST00000600523 WRNQ14191 1432 aaPredicted RBP eCLIP22.42■■□□□ 1.18
SRRM1-223ENST00000600523 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
SRRM1-223ENST00000600523 FGD5Q6ZNL6 1462 aa22.39■■□□□ 1.17
SRRM1-223ENST00000600523 SOGA1O94964 1423 aa22.38■■□□□ 1.17
SRRM1-223ENST00000600523 TOP2BQ02880 1626 aa22.31■■□□□ 1.16
SRRM1-223ENST00000600523 TARBP1Q13395 1621 aaKnown RBP22.3■■□□□ 1.16
SRRM1-223ENST00000600523 RAD54L2Q9Y4B4 1467 aa22.29■■□□□ 1.16
SRRM1-223ENST00000600523 BIVM-ERCC5R4GMW8 1640 aa22.29■■□□□ 1.16
SRRM1-223ENST00000600523 ZNF608Q9ULD9 1512 aaPredicted RBP22.27■■□□□ 1.16
SRRM1-223ENST00000600523 SYNJ1O43426 1573 aa22.27■■□□□ 1.16
SRRM1-223ENST00000600523 WDR97A6NE52 1622 aa22.23■■□□□ 1.15
SRRM1-223ENST00000600523 EIF4G3O43432 1585 aaKnown RBP22.22■■□□□ 1.15
SRRM1-223ENST00000600523 TDRD9Q8NDG6 1382 aaKnown RBP22.21■■□□□ 1.15
SRRM1-223ENST00000600523 AQRO60306 1485 aaKnown RBP eCLIP22.2■■□□□ 1.141e-15■■■■□ 19.6
SRRM1-223ENST00000600523 ABCA10Q8WWZ4 1543 aa22.17■■□□□ 1.14
SRRM1-223ENST00000600523 GAPVD1Q14C86 1478 aa22.11■■□□□ 1.13
SRRM1-223ENST00000600523 GRIN2BQ13224 1484 aa22.1■■□□□ 1.13
SRRM1-223ENST00000600523 TRIM41Q8WV44 630 aa22.06■■□□□ 1.12
SRRM1-223ENST00000600523 DNAJC5Q9H3Z4 198 aa22.06■■□□□ 1.12
SRRM1-223ENST00000600523 OSCARQ8IYS5 282 aa22.05■■□□□ 1.12
SRRM1-223ENST00000600523 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
SRRM1-223ENST00000600523 ABCA5Q8WWZ7 1642 aa22.03■■□□□ 1.12
SRRM1-223ENST00000600523 FBLN2P98095 1184 aa22.03■■□□□ 1.12
SRRM1-223ENST00000600523 SNAPC4Q5SXM2 1469 aa22.02■■□□□ 1.12
SRRM1-223ENST00000600523 PBRM1Q86U86 1689 aa22■■□□□ 1.11
SRRM1-223ENST00000600523 KIF27Q86VH2 1401 aa21.99■■□□□ 1.11
SRRM1-223ENST00000600523 CHMP7Q8WUX9 453 aaPredicted RBP21.99■■□□□ 1.11
SRRM1-223ENST00000600523 SYNJ2O15056 1496 aa21.94■■□□□ 1.1
SRRM1-223ENST00000600523 ERICH3Q5RHP9 1530 aa21.94■■□□□ 1.1
SRRM1-223ENST00000600523 CHD1O14646 1710 aa21.9■■□□□ 1.1
SRRM1-223ENST00000600523 FHAD1B1AJZ9 1412 aa21.87■■□□□ 1.09
SRRM1-223ENST00000600523 ADAMTS12P58397 1594 aa21.84■■□□□ 1.09
SRRM1-223ENST00000600523 IGF1RP08069 1367 aa21.8■■□□□ 1.08
SRRM1-223ENST00000600523 GRIN2AQ12879 1464 aa21.79■■□□□ 1.08
SRRM1-223ENST00000600523 CUL7Q14999 1698 aa21.77■■□□□ 1.08
SRRM1-223ENST00000600523 CHIC1Q5VXU3 224 aa21.76■■□□□ 1.07
SRRM1-223ENST00000600523 CARMIL1Q5VZK9 1371 aa21.73■■□□□ 1.07
SRRM1-223ENST00000600523 EEA1Q15075 1411 aa21.67■■□□□ 1.06
SRRM1-223ENST00000600523 CLASP1Q7Z460 1538 aa21.66■■□□□ 1.06
SRRM1-223ENST00000600523 RUSC2Q8N2Y8 1516 aa21.66■■□□□ 1.06
SRRM1-223ENST00000600523 NUP160Q12769 1436 aa21.66■■□□□ 1.06
SRRM1-223ENST00000600523 CEP170Q5SW79 1584 aa21.62■■□□□ 1.05
SRRM1-223ENST00000600523 RAPGEF2Q9Y4G8 1499 aa21.61■■□□□ 1.05
SRRM1-223ENST00000600523 CSRNP3Q8WYN3 585 aa21.6■■□□□ 1.05
SRRM1-223ENST00000600523 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
SRRM1-223ENST00000600523 RIMBP3CA6NJZ7 1639 aa21.55■■□□□ 1.04
SRRM1-223ENST00000600523 RIMBP3BA6NNM3 1639 aa21.55■■□□□ 1.04
SRRM1-223ENST00000600523 RIMBP3Q9UFD9 1639 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms