RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 KRTAP10-10P60014 251 aa7.83□□□□□ -1.16
SHKBP1-219ENST00000599575 COX7CP15954 63 aa7.82□□□□□ -1.16
SHKBP1-219ENST00000599575 KRTAP3-3Q9BYR6 98 aa7.82□□□□□ -1.16
SHKBP1-219ENST00000599575 MT1FP04733 61 aa7.81□□□□□ -1.16
SHKBP1-219ENST00000599575 SNURFQ9Y675 71 aa7.81□□□□□ -1.16
SHKBP1-219ENST00000599575 SPANXA2-OT1Q8N9U9 137 aa7.79□□□□□ -1.16
SHKBP1-219ENST00000599575 ACYP2P14621 99 aa7.77□□□□□ -1.17
SHKBP1-219ENST00000599575 ANAPC13Q9BS18 74 aa7.73□□□□□ -1.17
SHKBP1-219ENST00000599575 KRTAP9-3Q9BYQ3 159 aa7.72□□□□□ -1.17
SHKBP1-219ENST00000599575 H0YAA0 97 aa7.71□□□□□ -1.18
SHKBP1-219ENST00000599575 SPTSSBQ8NFR3 76 aa7.65□□□□□ -1.18
SHKBP1-219ENST00000599575 CRIPTQ9P021 101 aa7.61□□□□□ -1.19
SHKBP1-219ENST00000599575 CHKB-CPT1BH3BT56 60 aa7.6□□□□□ -1.19
SHKBP1-219ENST00000599575 H7BZZ5 65 aa7.6□□□□□ -1.19
SHKBP1-219ENST00000599575 FSIP2Q5CZC0 6907 aa7.58□□□□□ -1.2
SHKBP1-219ENST00000599575 LCE2BO14633 110 aa7.56□□□□□ -1.2
SHKBP1-219ENST00000599575 CRCT1Q9UGL9 99 aa7.54□□□□□ -1.2
SHKBP1-219ENST00000599575 KRTAP9-6A0A140TA67 174 aa7.53□□□□□ -1.2
SHKBP1-219ENST00000599575 USH2AO75445 5202 aa7.52□□□□□ -1.21
SHKBP1-219ENST00000599575 ADM2Q7Z4H4 148 aa7.52□□□□□ -1.21
SHKBP1-219ENST00000599575 SPRR2GQ9BYE4 73 aa7.52□□□□□ -1.21
SHKBP1-219ENST00000599575 CYSTM1Q9H1C7 97 aa7.52□□□□□ -1.21
SHKBP1-219ENST00000599575 CCDC179H3BU77 68 aa7.49□□□□□ -1.21
SHKBP1-219ENST00000599575 KRTAP19-1Q8IUB9 90 aa7.49□□□□□ -1.21
SHKBP1-219ENST00000599575 COA5Q86WW8 74 aa7.46□□□□□ -1.22
SHKBP1-219ENST00000599575 ATP5EP56381 51 aaPredicted RBP7.44□□□□□ -1.22
SHKBP1-219ENST00000599575 KRTAP19-8Q3LI54 63 aa7.39□□□□□ -1.23
SHKBP1-219ENST00000599575 KRTAP3-2Q9BYR7 98 aa7.39□□□□□ -1.23
SHKBP1-219ENST00000599575 P0C880 135 aa7.38□□□□□ -1.23
SHKBP1-219ENST00000599575 SSPOA2VEC9 5147 aa7.38□□□□□ -1.23
SHKBP1-219ENST00000599575 Q5VV11 94 aa7.37□□□□□ -1.23
SHKBP1-219ENST00000599575 R4GN34 69 aa7.36□□□□□ -1.23
SHKBP1-219ENST00000599575 TMEM258P61165 79 aa7.34□□□□□ -1.23
SHKBP1-219ENST00000599575 KRTAP19-6Q3LI70 58 aa7.31□□□□□ -1.24
SHKBP1-219ENST00000599575 M0QZ58 72 aa7.28□□□□□ -1.24
SHKBP1-219ENST00000599575 MT1BP07438 61 aa7.28□□□□□ -1.24
SHKBP1-219ENST00000599575 SEC61GP60059 68 aa7.28□□□□□ -1.24
SHKBP1-219ENST00000599575 SERP1Q9Y6X1 66 aa7.24□□□□□ -1.25
SHKBP1-219ENST00000599575 FCGBPQ9Y6R7 5405 aaPredicted RBP7.17□□□□□ -1.26
SHKBP1-219ENST00000599575 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
SHKBP1-219ENST00000599575 A0A1B0GU69 56 aa7.11□□□□□ -1.27
SHKBP1-219ENST00000599575 LINC01554Q52M75 96 aa7.11□□□□□ -1.27
SHKBP1-219ENST00000599575 A6NN06 94 aa7.1□□□□□ -1.27
SHKBP1-219ENST00000599575 A0A1B0GU33 70 aa7.08□□□□□ -1.28
SHKBP1-219ENST00000599575 KRTAP10-5P60370 271 aa7.08□□□□□ -1.28
SHKBP1-219ENST00000599575 PCP4P48539 62 aa7.07□□□□□ -1.28
SHKBP1-219ENST00000599575 PRR15LQ9BU68 103 aa7.07□□□□□ -1.28
SHKBP1-219ENST00000599575 PRO2289Q9P1D8 64 aa7.05□□□□□ -1.28
SHKBP1-219ENST00000599575 LINC01558Q9Y6Z2 57 aa7.03□□□□□ -1.28
SHKBP1-219ENST00000599575 KRTAP13-4Q3LI77 160 aa7.01□□□□□ -1.29
SHKBP1-219ENST00000599575 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.99□□□□□ -1.29
SHKBP1-219ENST00000599575 V9GYY9 64 aa6.93□□□□□ -1.3
SHKBP1-219ENST00000599575 SMIM26A0A096LP01 95 aa6.92□□□□□ -1.3
SHKBP1-219ENST00000599575 MT1XP80297 61 aa6.92□□□□□ -1.3
SHKBP1-219ENST00000599575 SPATA8Q6RVD6 105 aa6.91□□□□□ -1.3
SHKBP1-219ENST00000599575 MACF1Q9UPN3 7388 aaKnown RBP6.9□□□□□ -1.3
SHKBP1-219ENST00000599575 RPS28P62857 69 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-219ENST00000599575 A0A0D9SG42 100 aa6.85□□□□□ -1.31
SHKBP1-219ENST00000599575 Q1T7F1 81 aa6.85□□□□□ -1.31
SHKBP1-219ENST00000599575 UQCR11O14957 56 aa6.82□□□□□ -1.32
SHKBP1-219ENST00000599575 CAMK2N1Q7Z7J9 78 aa6.82□□□□□ -1.32
SHKBP1-219ENST00000599575 KRTAP9-7A8MTY7 169 aa6.8□□□□□ -1.32
SHKBP1-219ENST00000599575 KRTAP12-1P59990 96 aa6.77□□□□□ -1.33
SHKBP1-219ENST00000599575 KRTAP12-2P59991 146 aa6.77□□□□□ -1.33
SHKBP1-219ENST00000599575 SPINT4Q6UDR6 99 aa6.76□□□□□ -1.33
SHKBP1-219ENST00000599575 A8MU10 97 aa6.72□□□□□ -1.33
SHKBP1-219ENST00000599575 SYNE2Q8WXH0 6885 aaKnown RBP6.71□□□□□ -1.34
SHKBP1-219ENST00000599575 KRTAP6-3Q3LI67 103 aa6.71□□□□□ -1.34
SHKBP1-219ENST00000599575 PSPHP1O15172 72 aa6.69□□□□□ -1.34
SHKBP1-219ENST00000599575 MIR22HGQ0VDD5 57 aa6.66□□□□□ -1.34
SHKBP1-219ENST00000599575 KRTAP10-12P60413 245 aa6.62□□□□□ -1.35
SHKBP1-219ENST00000599575 KRTAP10-7P60409 375 aaPredicted RBP6.58□□□□□ -1.36
SHKBP1-219ENST00000599575 KRTAP5-9P26371 169 aa6.57□□□□□ -1.36
SHKBP1-219ENST00000599575 K7ERS5 55 aa6.54□□□□□ -1.36
SHKBP1-219ENST00000599575 A6NED7 52 aa6.53□□□□□ -1.36
SHKBP1-219ENST00000599575 KRTAP8-1Q8IUC2 63 aa6.52□□□□□ -1.37
SHKBP1-219ENST00000599575 KMT2DO14686 5537 aa6.48□□□□□ -1.37
SHKBP1-219ENST00000599575 KRTAP4-8A0A0G2JLE6 195 aa6.45□□□□□ -1.38
SHKBP1-219ENST00000599575 KRTAP4-8Q9BYQ9 185 aa6.45□□□□□ -1.38
SHKBP1-219ENST00000599575 TNP1P09430 55 aa6.41□□□□□ -1.38
SHKBP1-219ENST00000599575 C10orf95Q9H7T3 257 aa6.41□□□□□ -1.38
SHKBP1-219ENST00000599575 SPRR2FQ96RM1 72 aa6.4□□□□□ -1.38
SHKBP1-219ENST00000599575 MUC12Q9UKN1 5478 aa6.36□□□□□ -1.39
SHKBP1-219ENST00000599575 CDC42SE1Q9NRR8 79 aa6.35□□□□□ -1.39
SHKBP1-219ENST00000599575 MDN1Q9NU22 5596 aa6.3□□□□□ -1.4
SHKBP1-219ENST00000599575 NEBP20929 6669 aa6.28□□□□□ -1.4
SHKBP1-219ENST00000599575 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
SHKBP1-219ENST00000599575 SPRR2EP22531 72 aa6.21□□□□□ -1.42
SHKBP1-219ENST00000599575 SPRR2BP35325 72 aa6.21□□□□□ -1.42
SHKBP1-219ENST00000599575 SPRR2AP35326 72 aa6.21□□□□□ -1.42
SHKBP1-219ENST00000599575 LCE1AQ5T7P2 110 aa6.2□□□□□ -1.42
SHKBP1-219ENST00000599575 KRTAP19-7Q3SYF9 63 aa6.19□□□□□ -1.42
SHKBP1-219ENST00000599575 LCE3AQ5TA76 89 aa6.15□□□□□ -1.42
SHKBP1-219ENST00000599575 MT1EP04732 61 aa6.12□□□□□ -1.43
SHKBP1-219ENST00000599575 ROMO1P60602 79 aa6.11□□□□□ -1.43
SHKBP1-219ENST00000599575 KRTAP19-5Q3LI72 72 aa6.11□□□□□ -1.43
SHKBP1-219ENST00000599575 KRTAP23-1A1A580 65 aa6.1□□□□□ -1.43
SHKBP1-219ENST00000599575 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
SHKBP1-219ENST00000599575 SPRR2DP22532 72 aa6.01□□□□□ -1.45
SHKBP1-219ENST00000599575 BRK1Q8WUW1 75 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 229 ms