RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SERP1Q9Y6X1 66 aa7.55□□□□□ -1.2
TRIM28-209ENST00000597423 LCA10Q71F78 164 aa7.49□□□□□ -1.21
TRIM28-209ENST00000597423 RPS28P62857 69 aaKnown RBP7.48□□□□□ -1.21
TRIM28-209ENST00000597423 LCE2CQ5TA81 110 aa7.48□□□□□ -1.21
TRIM28-209ENST00000597423 CSAG1Q6PB30 78 aa7.48□□□□□ -1.21
TRIM28-209ENST00000597423 M0R2T5 61 aa7.41□□□□□ -1.22
TRIM28-209ENST00000597423 KRTAP3-3Q9BYR6 98 aa7.41□□□□□ -1.22
TRIM28-209ENST00000597423 FLGP20930 4061 aaPredicted RBP7.39□□□□□ -1.23
TRIM28-209ENST00000597423 MT1HP80294 61 aa7.38□□□□□ -1.23
TRIM28-209ENST00000597423 SMIM26A0A096LP01 95 aa7.34□□□□□ -1.23
TRIM28-209ENST00000597423 FAT4Q6V0I7 4981 aa7.34□□□□□ -1.23
TRIM28-209ENST00000597423 SEC61GP60059 68 aa7.31□□□□□ -1.24
TRIM28-209ENST00000597423 V9GYY9 64 aa7.31□□□□□ -1.24
TRIM28-209ENST00000597423 H0YAA0 97 aa7.25□□□□□ -1.25
TRIM28-209ENST00000597423 LINC01558Q9Y6Z2 57 aa7.24□□□□□ -1.25
TRIM28-209ENST00000597423 PRR15LQ9BU68 103 aa7.23□□□□□ -1.25
TRIM28-209ENST00000597423 A0A1B0GU69 56 aa7.22□□□□□ -1.25
TRIM28-209ENST00000597423 Q1T7F1 81 aa7.22□□□□□ -1.25
TRIM28-209ENST00000597423 LCE2AQ5TA79 106 aaPredicted RBP7.2□□□□□ -1.26
TRIM28-209ENST00000597423 ADM2Q7Z4H4 148 aa7.2□□□□□ -1.26
TRIM28-209ENST00000597423 KRTAP10-6P60371 365 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-209ENST00000597423 KRTAP3-2Q9BYR7 98 aa7.11□□□□□ -1.27
TRIM28-209ENST00000597423 LORP23490 312 aaPredicted RBP7.1□□□□□ -1.27
TRIM28-209ENST00000597423 P0C880 135 aa7.07□□□□□ -1.28
TRIM28-209ENST00000597423 KRTAP9-8Q9BYQ0 159 aa7.07□□□□□ -1.28
TRIM28-209ENST00000597423 CRIPTQ9P021 101 aa7.07□□□□□ -1.28
TRIM28-209ENST00000597423 A0A1B0GU33 70 aa7.06□□□□□ -1.28
TRIM28-209ENST00000597423 PSPHP1O15172 72 aa7.06□□□□□ -1.28
TRIM28-209ENST00000597423 KRTAP10-10P60014 251 aa7.06□□□□□ -1.28
TRIM28-209ENST00000597423 MT2AP02795 61 aa7.04□□□□□ -1.28
TRIM28-209ENST00000597423 M0QZ58 72 aa7□□□□□ -1.29
TRIM28-209ENST00000597423 R4GN34 69 aa7□□□□□ -1.29
TRIM28-209ENST00000597423 UQCR11O14957 56 aa6.98□□□□□ -1.29
TRIM28-209ENST00000597423 MT1FP04733 61 aa6.97□□□□□ -1.29
TRIM28-209ENST00000597423 Q5VV11 94 aa6.97□□□□□ -1.29
TRIM28-209ENST00000597423 A6NED7 52 aa6.9□□□□□ -1.3
TRIM28-209ENST00000597423 MIR22HGQ0VDD5 57 aa6.87□□□□□ -1.31
TRIM28-209ENST00000597423 SPATA8Q6RVD6 105 aa6.86□□□□□ -1.31
TRIM28-209ENST00000597423 SPRR2GQ9BYE4 73 aa6.85□□□□□ -1.31
TRIM28-209ENST00000597423 KRTAP9-3Q9BYQ3 159 aa6.84□□□□□ -1.31
TRIM28-209ENST00000597423 KRTAP13-4Q3LI77 160 aa6.81□□□□□ -1.32
TRIM28-209ENST00000597423 LINC01554Q52M75 96 aa6.81□□□□□ -1.32
TRIM28-209ENST00000597423 KRTAP19-1Q8IUB9 90 aa6.79□□□□□ -1.32
TRIM28-209ENST00000597423 A0A0D9SG42 100 aa6.77□□□□□ -1.33
TRIM28-209ENST00000597423 A6NN06 94 aa6.74□□□□□ -1.33
TRIM28-209ENST00000597423 CDC42SE1Q9NRR8 79 aa6.74□□□□□ -1.33
TRIM28-209ENST00000597423 A8MU10 97 aa6.72□□□□□ -1.33
TRIM28-209ENST00000597423 K7ERS5 55 aa6.7□□□□□ -1.34
TRIM28-209ENST00000597423 KRTAP19-8Q3LI54 63 aa6.7□□□□□ -1.34
TRIM28-209ENST00000597423 LCE2DQ5TA82 110 aaPredicted RBP6.7□□□□□ -1.34
TRIM28-209ENST00000597423 PLAC4Q8WY50 150 aa6.7□□□□□ -1.34
TRIM28-209ENST00000597423 SPINT4Q6UDR6 99 aa6.66□□□□□ -1.34
TRIM28-209ENST00000597423 BRK1Q8WUW1 75 aa6.66□□□□□ -1.34
TRIM28-209ENST00000597423 LCE2BO14633 110 aa6.64□□□□□ -1.35
TRIM28-209ENST00000597423 KRTAP12-1P59990 96 aa6.61□□□□□ -1.35
TRIM28-209ENST00000597423 MT1BP07438 61 aa6.56□□□□□ -1.36
TRIM28-209ENST00000597423 KRTAP12-2P59991 146 aa6.56□□□□□ -1.36
TRIM28-209ENST00000597423 CAMK2N1Q7Z7J9 78 aa6.55□□□□□ -1.36
TRIM28-209ENST00000597423 KRTAP9-2Q9BYQ4 174 aa6.47□□□□□ -1.37
TRIM28-209ENST00000597423 USH2AO75445 5202 aa6.45□□□□□ -1.38
TRIM28-209ENST00000597423 PRO2289Q9P1D8 64 aa6.44□□□□□ -1.38
TRIM28-209ENST00000597423 PRO0628Q9UI54 55 aa6.44□□□□□ -1.38
TRIM28-209ENST00000597423 KRTAP19-6Q3LI70 58 aa6.34□□□□□ -1.39
TRIM28-209ENST00000597423 PMAIP1Q13794 54 aa6.33□□□□□ -1.4
TRIM28-209ENST00000597423 KRTAP10-5P60370 271 aa6.32□□□□□ -1.4
TRIM28-209ENST00000597423 MT1XP80297 61 aa6.32□□□□□ -1.4
TRIM28-209ENST00000597423 ROMO1P60602 79 aa6.29□□□□□ -1.4
TRIM28-209ENST00000597423 FSIP2Q5CZC0 6907 aa6.29□□□□□ -1.4
TRIM28-209ENST00000597423 C10orf95Q9H7T3 257 aa6.25□□□□□ -1.41
TRIM28-209ENST00000597423 CRCT1Q9UGL9 99 aa6.25□□□□□ -1.41
TRIM28-209ENST00000597423 SSPOA2VEC9 5147 aa6.23□□□□□ -1.41
TRIM28-209ENST00000597423 TNP1P09430 55 aa6.21□□□□□ -1.42
TRIM28-209ENST00000597423 KRTAP25-1Q3LHN0 102 aa6.17□□□□□ -1.42
TRIM28-209ENST00000597423 FCGBPQ9Y6R7 5405 aaPredicted RBP6.06□□□□□ -1.44
TRIM28-209ENST00000597423 KRTAP9-6A0A140TA67 174 aa6.06□□□□□ -1.44
TRIM28-209ENST00000597423 KRTAP10-7P60409 375 aaPredicted RBP6.03□□□□□ -1.44
TRIM28-209ENST00000597423 KRTAP10-12P60413 245 aa6.03□□□□□ -1.44
TRIM28-209ENST00000597423 KRTAP23-1A1A580 65 aa5.99□□□□□ -1.45
TRIM28-209ENST00000597423 KTN1-AS1Q86SY8 53 aa5.98□□□□□ -1.45
TRIM28-209ENST00000597423 PP632Q6XCG6 107 aa5.96□□□□□ -1.46
TRIM28-209ENST00000597423 LCE3AQ5TA76 89 aa5.86□□□□□ -1.47
TRIM28-209ENST00000597423 PRAC1Q96KF2 57 aa5.84□□□□□ -1.47
TRIM28-209ENST00000597423 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
TRIM28-209ENST00000597423 KRTAP4-8Q9BYQ9 185 aa5.83□□□□□ -1.48
TRIM28-209ENST00000597423 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
TRIM28-209ENST00000597423 MACF1Q9UPN3 7388 aaKnown RBP5.78□□□□□ -1.48
TRIM28-209ENST00000597423 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.76□□□□□ -1.49
TRIM28-209ENST00000597423 KMT2DO14686 5537 aa5.71□□□□□ -1.5
TRIM28-209ENST00000597423 KRTAP12-3P60328 96 aa5.7□□□□□ -1.5
TRIM28-209ENST00000597423 KRTAP19-5Q3LI72 72 aa5.69□□□□□ -1.5
TRIM28-209ENST00000597423 SVIPQ8NHG7 77 aa5.66□□□□□ -1.5
TRIM28-209ENST00000597423 SYNE2Q8WXH0 6885 aaKnown RBP5.64□□□□□ -1.51
TRIM28-209ENST00000597423 KRTAP6-3Q3LI67 103 aa5.63□□□□□ -1.51
TRIM28-209ENST00000597423 KRTAP19-7Q3SYF9 63 aa5.63□□□□□ -1.51
TRIM28-209ENST00000597423 SPRR2FQ96RM1 72 aa5.62□□□□□ -1.51
TRIM28-209ENST00000597423 KRTAP5-9P26371 169 aa5.6□□□□□ -1.51
TRIM28-209ENST00000597423 MT1EP04732 61 aa5.57□□□□□ -1.52
TRIM28-209ENST00000597423 KRTAP15-1Q3LI76 137 aa5.55□□□□□ -1.52
TRIM28-209ENST00000597423 KRTAP9-7A8MTY7 169 aa5.51□□□□□ -1.53
TRIM28-209ENST00000597423 KRTAP19-4Q3LI73 84 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 174.9 ms