RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NISCHQ9Y2I1 1504 aa35.08■■■■□ 3.21
TRIM28-209ENST00000597423 CCDC180Q9P1Z9 1646 aa30.74■■■□□ 2.51
TRIM28-209ENST00000597423 ABCC9O60706 1549 aa29.41■■■□□ 2.3
TRIM28-209ENST00000597423 ZCCHC6Q5VYS8 1495 aaKnown RBP29.35■■■□□ 2.29
TRIM28-209ENST00000597423 DCAF8L2P0C7V8 631 aa29.23■■■□□ 2.27
TRIM28-209ENST00000597423 DCAF1Q9Y4B6 1507 aa29.07■■■□□ 2.24
TRIM28-209ENST00000597423 MYO15BQ96JP2 1530 aa28.91■■■□□ 2.22
TRIM28-209ENST00000597423 NACADO15069 1562 aa28.82■■■□□ 2.2
TRIM28-209ENST00000597423 RB1CC1Q8TDY2 1594 aa28.65■■■□□ 2.18
TRIM28-209ENST00000597423 SHROOM4Q9ULL8 1493 aa28.27■■■□□ 2.12
TRIM28-209ENST00000597423 SCRIBQ14160 1630 aa28.14■■■□□ 2.09
TRIM28-209ENST00000597423 UNC13AQ9UPW8 1703 aa27.77■■■□□ 2.04
TRIM28-209ENST00000597423 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
TRIM28-209ENST00000597423 BICRAQ9NZM4 1560 aa27.63■■■□□ 2.01
TRIM28-209ENST00000597423 CECR2Q9BXF3 1484 aa27.21■■□□□ 1.95
TRIM28-209ENST00000597423 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
TRIM28-209ENST00000597423 SUPT5HO00267 1087 aaKnown RBP27.13■■□□□ 1.93
TRIM28-209ENST00000597423 RSF1Q96T23 1441 aaPredicted RBP27.07■■□□□ 1.92
TRIM28-209ENST00000597423 MROH2BQ7Z745 1585 aa27.01■■□□□ 1.92
TRIM28-209ENST00000597423 SMARCA4P51532 1647 aa26.99■■□□□ 1.91
TRIM28-209ENST00000597423 EIF4G1Q04637 1599 aaKnown RBP26.9■■□□□ 1.9
TRIM28-209ENST00000597423 SMARCA2P51531 1590 aa26.74■■□□□ 1.87
TRIM28-209ENST00000597423 ATAD2BQ9ULI0 1458 aa26.72■■□□□ 1.87
TRIM28-209ENST00000597423 WIZO95785 1651 aa26.72■■□□□ 1.87
TRIM28-209ENST00000597423 PEG3Q9GZU2 1588 aa26.71■■□□□ 1.87
TRIM28-209ENST00000597423 NCAPD3P42695 1498 aa26.62■■□□□ 1.85
TRIM28-209ENST00000597423 CC2D2AQ9P2K1 1620 aa26.58■■□□□ 1.85
TRIM28-209ENST00000597423 BAZ1BQ9UIG0 1483 aaKnown RBP26.56■■□□□ 1.84
TRIM28-209ENST00000597423 TOP2AP11388 1531 aaKnown RBP26.54■■□□□ 1.84
TRIM28-209ENST00000597423 HMGXB3Q12766 1538 aa26.48■■□□□ 1.83
TRIM28-209ENST00000597423 DNAJC5BQ9UF47 199 aa26.28■■□□□ 1.8
TRIM28-209ENST00000597423 CCDC88BA6NC98 1476 aa26.28■■□□□ 1.8
TRIM28-209ENST00000597423 CADPSQ9ULU8 1353 aa25.93■■□□□ 1.74
TRIM28-209ENST00000597423 CFTRP13569 1480 aa25.88■■□□□ 1.73
TRIM28-209ENST00000597423 CHIC1Q5VXU3 224 aa25.76■■□□□ 1.71
TRIM28-209ENST00000597423 LAMC3Q9Y6N6 1575 aa25.73■■□□□ 1.71
TRIM28-209ENST00000597423 PDS5BQ9NTI5 1447 aa25.66■■□□□ 1.7
TRIM28-209ENST00000597423 NESP48681 1621 aa25.64■■□□□ 1.7
TRIM28-209ENST00000597423 TRIM41Q8WV44 630 aa25.64■■□□□ 1.7
TRIM28-209ENST00000597423 FANCD2Q9BXW9 1451 aa25.57■■□□□ 1.68
TRIM28-209ENST00000597423 PRDM2Q13029 1718 aa25.55■■□□□ 1.68
TRIM28-209ENST00000597423 WRNQ14191 1432 aaPredicted RBP eCLIP25.53■■□□□ 1.68
TRIM28-209ENST00000597423 ABCC8Q09428 1581 aa25.48■■□□□ 1.67
TRIM28-209ENST00000597423 CEP164Q9UPV0 1460 aa25.47■■□□□ 1.67
TRIM28-209ENST00000597423 ERCC6Q03468 1493 aa25.36■■□□□ 1.65
TRIM28-209ENST00000597423 TOP2BQ02880 1626 aa25.3■■□□□ 1.64
TRIM28-209ENST00000597423 CUX1P39880 1505 aa25.29■■□□□ 1.64
TRIM28-209ENST00000597423 SYNJ1O43426 1573 aa25.28■■□□□ 1.64
TRIM28-209ENST00000597423 KIF21AQ7Z4S6 1674 aa25.26■■□□□ 1.63
TRIM28-209ENST00000597423 MRC2Q9UBG0 1479 aa25.25■■□□□ 1.63
TRIM28-209ENST00000597423 DNMBPQ6XZF7 1577 aa25.24■■□□□ 1.63
TRIM28-209ENST00000597423 BIVM-ERCC5R4GMW8 1640 aa25.23■■□□□ 1.63
TRIM28-209ENST00000597423 TOPBP1Q92547 1522 aa25.22■■□□□ 1.63
TRIM28-209ENST00000597423 URB2Q14146 1524 aaKnown RBP25.2■■□□□ 1.62
TRIM28-209ENST00000597423 FGD5Q6ZNL6 1462 aa25.12■■□□□ 1.61
TRIM28-209ENST00000597423 SOGA1O94964 1423 aa25.08■■□□□ 1.61
TRIM28-209ENST00000597423 WDR62O43379 1518 aa25.07■■□□□ 1.6
TRIM28-209ENST00000597423 EEA1Q15075 1411 aa25.07■■□□□ 1.6
TRIM28-209ENST00000597423 POLA1P09884 1462 aaPredicted RBP25.05■■□□□ 1.6
TRIM28-209ENST00000597423 FAM9AQ8IZU1 332 aaPredicted RBP25.04■■□□□ 1.6
TRIM28-209ENST00000597423 KIF27Q86VH2 1401 aa24.99■■□□□ 1.59
TRIM28-209ENST00000597423 THOC2Q8NI27 1593 aaKnown RBP24.99■■□□□ 1.59
TRIM28-209ENST00000597423 CSRNP3Q8WYN3 585 aa24.96■■□□□ 1.59
TRIM28-209ENST00000597423 RAD54L2Q9Y4B4 1467 aa24.95■■□□□ 1.58
TRIM28-209ENST00000597423 ABCA10Q8WWZ4 1543 aa24.93■■□□□ 1.58
TRIM28-209ENST00000597423 CUX2O14529 1486 aa24.93■■□□□ 1.58
TRIM28-209ENST00000597423 IFT140Q96RY7 1462 aa24.92■■□□□ 1.58
TRIM28-209ENST00000597423 RUSC2Q8N2Y8 1516 aa24.87■■□□□ 1.57
TRIM28-209ENST00000597423 TDRD9Q8NDG6 1382 aaKnown RBP24.81■■□□□ 1.56
TRIM28-209ENST00000597423 TARBP1Q13395 1621 aaKnown RBP24.81■■□□□ 1.56
TRIM28-209ENST00000597423 IGF1RP08069 1367 aa24.77■■□□□ 1.56
TRIM28-209ENST00000597423 GAPVD1Q14C86 1478 aa24.76■■□□□ 1.55
TRIM28-209ENST00000597423 WDR97A6NE52 1622 aa24.72■■□□□ 1.55
TRIM28-209ENST00000597423 LOC105371045A0A1W2PR82 267 aa24.72■■□□□ 1.55
TRIM28-209ENST00000597423 AQRO60306 1485 aaKnown RBP eCLIP24.7■■□□□ 1.546e-12■■■■■ 63.4
TRIM28-209ENST00000597423 ABCA5Q8WWZ7 1642 aa24.66■■□□□ 1.54
TRIM28-209ENST00000597423 CARMIL1Q5VZK9 1371 aa24.66■■□□□ 1.54
TRIM28-209ENST00000597423 ZNF608Q9ULD9 1512 aaPredicted RBP24.66■■□□□ 1.54
TRIM28-209ENST00000597423 GRIN2BQ13224 1484 aa24.65■■□□□ 1.54
TRIM28-209ENST00000597423 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
TRIM28-209ENST00000597423 EHMT2Q96KQ7 1210 aa24.63■■□□□ 1.53
TRIM28-209ENST00000597423 PRXQ9BXM0 1461 aa24.63■■□□□ 1.53
TRIM28-209ENST00000597423 UBTFP17480 764 aaKnown RBP24.62■■□□□ 1.53
TRIM28-209ENST00000597423 GOLGA3Q08378 1498 aa24.61■■□□□ 1.53
TRIM28-209ENST00000597423 KIF21BO75037 1637 aa24.59■■□□□ 1.53
TRIM28-209ENST00000597423 RAPGEF2Q9Y4G8 1499 aa24.57■■□□□ 1.52
TRIM28-209ENST00000597423 CUL7Q14999 1698 aa24.54■■□□□ 1.52
TRIM28-209ENST00000597423 EIF4G3O43432 1585 aaKnown RBP24.54■■□□□ 1.52
TRIM28-209ENST00000597423 FHAD1B1AJZ9 1412 aa24.52■■□□□ 1.52
TRIM28-209ENST00000597423 TNIKQ9UKE5 1360 aa24.5■■□□□ 1.51
TRIM28-209ENST00000597423 MAGI1Q96QZ7 1491 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-209ENST00000597423 PBRM1Q86U86 1689 aa24.47■■□□□ 1.51
TRIM28-209ENST00000597423 CHMP7Q8WUX9 453 aaPredicted RBP24.45■■□□□ 1.5
TRIM28-209ENST00000597423 SNAPC4Q5SXM2 1469 aa24.45■■□□□ 1.5
TRIM28-209ENST00000597423 ADAMTS12P58397 1594 aa24.38■■□□□ 1.49
TRIM28-209ENST00000597423 FBLN2P98095 1184 aa24.38■■□□□ 1.49
TRIM28-209ENST00000597423 SYNJ2O15056 1496 aa24.37■■□□□ 1.49
TRIM28-209ENST00000597423 GRIN2AQ12879 1464 aa24.28■■□□□ 1.48
TRIM28-209ENST00000597423 CEP162Q5TB80 1403 aa24.25■■□□□ 1.47
TRIM28-209ENST00000597423 RANGAP1P46060 587 aaPredicted RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms