RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 DMAC1Q96GE9 116 aa7.34□□□□□ -1.23
TRIM28-207ENST00000597136 KRTAP9-2Q9BYQ4 174 aa7.31□□□□□ -1.24
TRIM28-207ENST00000597136 KRTAP9-8Q9BYQ0 159 aa7.28□□□□□ -1.24
TRIM28-207ENST00000597136 ACYP2P14621 99 aa7.26□□□□□ -1.25
TRIM28-207ENST00000597136 S4R3F8 94 aa7.26□□□□□ -1.25
TRIM28-207ENST00000597136 TMEM258P61165 79 aa7.25□□□□□ -1.25
TRIM28-207ENST00000597136 LCA10Q71F78 164 aa7.24□□□□□ -1.25
TRIM28-207ENST00000597136 LCE2DQ5TA82 110 aaPredicted RBP7.23□□□□□ -1.25
TRIM28-207ENST00000597136 ATP5EP56381 51 aaPredicted RBP7.2□□□□□ -1.26
TRIM28-207ENST00000597136 MT2AP02795 61 aa7.2□□□□□ -1.26
TRIM28-207ENST00000597136 KRTAP3-3Q9BYR6 98 aa7.2□□□□□ -1.26
TRIM28-207ENST00000597136 MT1FP04733 61 aa7.15□□□□□ -1.27
TRIM28-207ENST00000597136 CSAG1Q6PB30 78 aa7.14□□□□□ -1.27
TRIM28-207ENST00000597136 COA5Q86WW8 74 aa7.13□□□□□ -1.27
TRIM28-207ENST00000597136 CHKB-CPT1BH3BT56 60 aa7.12□□□□□ -1.27
TRIM28-207ENST00000597136 FSIP2Q5CZC0 6907 aa7.1□□□□□ -1.27
TRIM28-207ENST00000597136 KRTAP10-10P60014 251 aa7.1□□□□□ -1.27
TRIM28-207ENST00000597136 SPTSSBQ8NFR3 76 aa7.05□□□□□ -1.28
TRIM28-207ENST00000597136 KRTAP9-3Q9BYQ3 159 aa7.03□□□□□ -1.28
TRIM28-207ENST00000597136 SERP1Q9Y6X1 66 aa7.01□□□□□ -1.29
TRIM28-207ENST00000597136 LCE2BO14633 110 aa6.97□□□□□ -1.29
TRIM28-207ENST00000597136 H0YAA0 97 aa6.95□□□□□ -1.3
TRIM28-207ENST00000597136 KRTAP9-6A0A140TA67 174 aa6.95□□□□□ -1.3
TRIM28-207ENST00000597136 CRCT1Q9UGL9 99 aa6.94□□□□□ -1.3
TRIM28-207ENST00000597136 USH2AO75445 5202 aa6.91□□□□□ -1.3
TRIM28-207ENST00000597136 ADM2Q7Z4H4 148 aa6.91□□□□□ -1.3
TRIM28-207ENST00000597136 RPS28P62857 69 aaKnown RBP6.88□□□□□ -1.31
TRIM28-207ENST00000597136 KRTAP3-2Q9BYR7 98 aa6.87□□□□□ -1.31
TRIM28-207ENST00000597136 P0C880 135 aa6.83□□□□□ -1.32
TRIM28-207ENST00000597136 SSPOA2VEC9 5147 aa6.82□□□□□ -1.32
TRIM28-207ENST00000597136 KRTAP19-1Q8IUB9 90 aa6.81□□□□□ -1.32
TRIM28-207ENST00000597136 SEC61GP60059 68 aa6.79□□□□□ -1.32
TRIM28-207ENST00000597136 SMIM26A0A096LP01 95 aa6.78□□□□□ -1.32
TRIM28-207ENST00000597136 SVIPQ8NHG7 77 aa6.78□□□□□ -1.32
TRIM28-207ENST00000597136 LINC01558Q9Y6Z2 57 aa6.77□□□□□ -1.33
TRIM28-207ENST00000597136 CRIPTQ9P021 101 aa6.75□□□□□ -1.33
TRIM28-207ENST00000597136 A0A1B0GU69 56 aa6.74□□□□□ -1.33
TRIM28-207ENST00000597136 Q1T7F1 81 aa6.72□□□□□ -1.33
TRIM28-207ENST00000597136 SPRR2GQ9BYE4 73 aa6.71□□□□□ -1.34
TRIM28-207ENST00000597136 V9GYY9 64 aa6.71□□□□□ -1.34
TRIM28-207ENST00000597136 PRR15LQ9BU68 103 aa6.69□□□□□ -1.34
TRIM28-207ENST00000597136 R4GN34 69 aa6.68□□□□□ -1.34
TRIM28-207ENST00000597136 M0QZ58 72 aa6.65□□□□□ -1.34
TRIM28-207ENST00000597136 A0A1B0GU33 70 aa6.65□□□□□ -1.35
TRIM28-207ENST00000597136 KRTAP19-8Q3LI54 63 aa6.64□□□□□ -1.35
TRIM28-207ENST00000597136 MT1BP07438 61 aa6.63□□□□□ -1.35
TRIM28-207ENST00000597136 PSPHP1O15172 72 aa6.62□□□□□ -1.35
TRIM28-207ENST00000597136 KRTAP19-6Q3LI70 58 aa6.62□□□□□ -1.35
TRIM28-207ENST00000597136 FCGBPQ9Y6R7 5405 aaPredicted RBP6.62□□□□□ -1.35
TRIM28-207ENST00000597136 KRTAP13-4Q3LI77 160 aa6.6□□□□□ -1.35
TRIM28-207ENST00000597136 Q5VV11 94 aa6.58□□□□□ -1.36
TRIM28-207ENST00000597136 SPATA8Q6RVD6 105 aa6.54□□□□□ -1.36
TRIM28-207ENST00000597136 LINC01554Q52M75 96 aa6.53□□□□□ -1.36
TRIM28-207ENST00000597136 UQCR11O14957 56 aa6.49□□□□□ -1.37
TRIM28-207ENST00000597136 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.45□□□□□ -1.38
TRIM28-207ENST00000597136 A0A0D9SG42 100 aa6.44□□□□□ -1.38
TRIM28-207ENST00000597136 A6NED7 52 aa6.42□□□□□ -1.38
TRIM28-207ENST00000597136 A6NN06 94 aa6.42□□□□□ -1.38
TRIM28-207ENST00000597136 A8MU10 97 aa6.41□□□□□ -1.38
TRIM28-207ENST00000597136 MIR22HGQ0VDD5 57 aa6.4□□□□□ -1.38
TRIM28-207ENST00000597136 MACF1Q9UPN3 7388 aaKnown RBP6.4□□□□□ -1.39
TRIM28-207ENST00000597136 PLAC4Q8WY50 150 aa6.4□□□□□ -1.39
TRIM28-207ENST00000597136 KRTAP10-5P60370 271 aa6.39□□□□□ -1.39
TRIM28-207ENST00000597136 KRTAP12-1P59990 96 aa6.34□□□□□ -1.39
TRIM28-207ENST00000597136 SPINT4Q6UDR6 99 aa6.31□□□□□ -1.4
TRIM28-207ENST00000597136 SYNE2Q8WXH0 6885 aaKnown RBP6.3□□□□□ -1.4
TRIM28-207ENST00000597136 KRTAP12-2P59991 146 aa6.3□□□□□ -1.4
TRIM28-207ENST00000597136 KRTAP9-7A8MTY7 169 aa6.29□□□□□ -1.4
TRIM28-207ENST00000597136 MT1XP80297 61 aa6.27□□□□□ -1.41
TRIM28-207ENST00000597136 CDC42SE1Q9NRR8 79 aa6.27□□□□□ -1.41
TRIM28-207ENST00000597136 CAMK2N1Q7Z7J9 78 aa6.22□□□□□ -1.41
TRIM28-207ENST00000597136 PRO2289Q9P1D8 64 aa6.18□□□□□ -1.42
TRIM28-207ENST00000597136 BRK1Q8WUW1 75 aa6.17□□□□□ -1.42
TRIM28-207ENST00000597136 K7ERS5 55 aa6.15□□□□□ -1.42
TRIM28-207ENST00000597136 KRTAP6-3Q3LI67 103 aa6.1□□□□□ -1.43
TRIM28-207ENST00000597136 KMT2DO14686 5537 aa6.05□□□□□ -1.44
TRIM28-207ENST00000597136 KRTAP10-7P60409 375 aaPredicted RBP6.02□□□□□ -1.45
TRIM28-207ENST00000597136 C10orf95Q9H7T3 257 aa6.01□□□□□ -1.45
TRIM28-207ENST00000597136 KRTAP4-8A0A0G2JLE6 195 aa5.97□□□□□ -1.45
TRIM28-207ENST00000597136 KRTAP4-8Q9BYQ9 185 aa5.97□□□□□ -1.45
TRIM28-207ENST00000597136 KRTAP10-12P60413 245 aa5.95□□□□□ -1.46
TRIM28-207ENST00000597136 KRTAP5-9P26371 169 aa5.94□□□□□ -1.46
TRIM28-207ENST00000597136 PRO0628Q9UI54 55 aa5.9□□□□□ -1.46
TRIM28-207ENST00000597136 KRTAP8-1Q8IUC2 63 aa5.89□□□□□ -1.47
TRIM28-207ENST00000597136 MUC12Q9UKN1 5478 aa5.88□□□□□ -1.47
TRIM28-207ENST00000597136 TNP1P09430 55 aa5.87□□□□□ -1.47
TRIM28-207ENST00000597136 ROMO1P60602 79 aa5.86□□□□□ -1.47
TRIM28-207ENST00000597136 SPRR2FQ96RM1 72 aa5.84□□□□□ -1.48
TRIM28-207ENST00000597136 PMAIP1Q13794 54 aa5.82□□□□□ -1.48
TRIM28-207ENST00000597136 NEBP20929 6669 aa5.82□□□□□ -1.48
TRIM28-207ENST00000597136 KRTAP25-1Q3LHN0 102 aa5.8□□□□□ -1.48
TRIM28-207ENST00000597136 MDN1Q9NU22 5596 aa5.74□□□□□ -1.49
TRIM28-207ENST00000597136 SPRR2EP22531 72 aa5.68□□□□□ -1.5
TRIM28-207ENST00000597136 SPRR2BP35325 72 aa5.68□□□□□ -1.5
TRIM28-207ENST00000597136 SPRR2AP35326 72 aa5.68□□□□□ -1.5
TRIM28-207ENST00000597136 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
TRIM28-207ENST00000597136 LCE1AQ5T7P2 110 aa5.67□□□□□ -1.5
TRIM28-207ENST00000597136 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
TRIM28-207ENST00000597136 KRTAP19-7Q3SYF9 63 aa5.62□□□□□ -1.51
TRIM28-207ENST00000597136 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms