RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 M0R2T5 61 aa10.11□□□□□ -0.79
ATG4D-208ENST00000588667 RPS28P62857 69 aaKnown RBP10.08□□□□□ -0.8
ATG4D-208ENST00000588667 COA5Q86WW8 74 aa10.04□□□□□ -0.8
ATG4D-208ENST00000588667 KRTAP10-6P60371 365 aaPredicted RBP10.01□□□□□ -0.81
ATG4D-208ENST00000588667 KRTAP3-1Q9BYR8 98 aa10.01□□□□□ -0.81
ATG4D-208ENST00000588667 LORP23490 312 aaPredicted RBP10□□□□□ -0.81
ATG4D-208ENST00000588667 CHKB-CPT1BH3BT56 60 aa9.96□□□□□ -0.81
ATG4D-208ENST00000588667 H1FX-AS1Q4G0G2 97 aa9.88□□□□□ -0.83
ATG4D-208ENST00000588667 SMIM26A0A096LP01 95 aa9.86□□□□□ -0.83
ATG4D-208ENST00000588667 KRTAP9-2Q9BYQ4 174 aa9.85□□□□□ -0.83
ATG4D-208ENST00000588667 SPTSSBQ8NFR3 76 aa9.8□□□□□ -0.84
ATG4D-208ENST00000588667 S4R3F8 94 aa9.79□□□□□ -0.84
ATG4D-208ENST00000588667 LCE2DQ5TA82 110 aaPredicted RBP9.78□□□□□ -0.84
ATG4D-208ENST00000588667 KRTAP9-8Q9BYQ0 159 aa9.76□□□□□ -0.85
ATG4D-208ENST00000588667 LCA10Q71F78 164 aa9.74□□□□□ -0.85
ATG4D-208ENST00000588667 V9GYY9 64 aa9.71□□□□□ -0.86
ATG4D-208ENST00000588667 Q1T7F1 81 aa9.68□□□□□ -0.86
ATG4D-208ENST00000588667 MT2AP02795 61 aa9.67□□□□□ -0.86
ATG4D-208ENST00000588667 KRTAP3-3Q9BYR6 98 aa9.67□□□□□ -0.86
ATG4D-208ENST00000588667 LINC01558Q9Y6Z2 57 aa9.63□□□□□ -0.87
ATG4D-208ENST00000588667 CSAG1Q6PB30 78 aa9.6□□□□□ -0.87
ATG4D-208ENST00000588667 MT1FP04733 61 aa9.59□□□□□ -0.87
ATG4D-208ENST00000588667 KRTAP10-10P60014 251 aa9.56□□□□□ -0.88
ATG4D-208ENST00000588667 A0A1B0GU69 56 aa9.53□□□□□ -0.88
ATG4D-208ENST00000588667 PRR15LQ9BU68 103 aa9.53□□□□□ -0.88
ATG4D-208ENST00000588667 SEC61GP60059 68 aa9.52□□□□□ -0.89
ATG4D-208ENST00000588667 PSPHP1O15172 72 aa9.5□□□□□ -0.89
ATG4D-208ENST00000588667 FSIP2Q5CZC0 6907 aa9.48□□□□□ -0.89
ATG4D-208ENST00000588667 KRTAP9-3Q9BYQ3 159 aa9.45□□□□□ -0.9
ATG4D-208ENST00000588667 Q5VV11 94 aa9.41□□□□□ -0.9
ATG4D-208ENST00000588667 KRTAP9-6A0A140TA67 174 aa9.39□□□□□ -0.91
ATG4D-208ENST00000588667 H0YAA0 97 aa9.37□□□□□ -0.91
ATG4D-208ENST00000588667 CRCT1Q9UGL9 99 aa9.37□□□□□ -0.91
ATG4D-208ENST00000588667 ADM2Q7Z4H4 148 aa9.33□□□□□ -0.92
ATG4D-208ENST00000588667 LCE2BO14633 110 aa9.31□□□□□ -0.92
ATG4D-208ENST00000588667 KRTAP3-2Q9BYR7 98 aa9.31□□□□□ -0.92
ATG4D-208ENST00000588667 USH2AO75445 5202 aa9.29□□□□□ -0.92
ATG4D-208ENST00000588667 A0A1B0GU33 70 aa9.24□□□□□ -0.93
ATG4D-208ENST00000588667 A6NED7 52 aa9.24□□□□□ -0.93
ATG4D-208ENST00000588667 P0C880 135 aa9.24□□□□□ -0.93
ATG4D-208ENST00000588667 UQCR11O14957 56 aa9.23□□□□□ -0.93
ATG4D-208ENST00000588667 SSPOA2VEC9 5147 aa9.14□□□□□ -0.95
ATG4D-208ENST00000588667 KRTAP19-1Q8IUB9 90 aa9.13□□□□□ -0.95
ATG4D-208ENST00000588667 MIR22HGQ0VDD5 57 aa9.1□□□□□ -0.95
ATG4D-208ENST00000588667 BRK1Q8WUW1 75 aa9.08□□□□□ -0.96
ATG4D-208ENST00000588667 SPRR2GQ9BYE4 73 aa9.08□□□□□ -0.96
ATG4D-208ENST00000588667 SPATA8Q6RVD6 105 aa9.07□□□□□ -0.96
ATG4D-208ENST00000588667 CRIPTQ9P021 101 aa9.07□□□□□ -0.96
ATG4D-208ENST00000588667 M0QZ58 72 aa9.06□□□□□ -0.96
ATG4D-208ENST00000588667 CDC42SE1Q9NRR8 79 aa9.06□□□□□ -0.96
ATG4D-208ENST00000588667 R4GN34 69 aa9.03□□□□□ -0.96
ATG4D-208ENST00000588667 KRTAP13-4Q3LI77 160 aa9.02□□□□□ -0.97
ATG4D-208ENST00000588667 KRTAP19-8Q3LI54 63 aa8.95□□□□□ -0.98
ATG4D-208ENST00000588667 KRTAP19-6Q3LI70 58 aa8.94□□□□□ -0.98
ATG4D-208ENST00000588667 A8MU10 97 aa8.93□□□□□ -0.98
ATG4D-208ENST00000588667 FCGBPQ9Y6R7 5405 aaPredicted RBP8.9□□□□□ -0.98
ATG4D-208ENST00000588667 MT1BP07438 61 aa8.9□□□□□ -0.99
ATG4D-208ENST00000588667 A0A0D9SG42 100 aa8.88□□□□□ -0.99
ATG4D-208ENST00000588667 PRO0628Q9UI54 55 aa8.84□□□□□ -0.99
ATG4D-208ENST00000588667 LINC01554Q52M75 96 aa8.83□□□□□ -1
ATG4D-208ENST00000588667 K7ERS5 55 aa8.76□□□□□ -1.01
ATG4D-208ENST00000588667 A6NN06 94 aa8.71□□□□□ -1.02
ATG4D-208ENST00000588667 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.71□□□□□ -1.02
ATG4D-208ENST00000588667 KRTAP12-1P59990 96 aa8.69□□□□□ -1.02
ATG4D-208ENST00000588667 SPINT4Q6UDR6 99 aa8.69□□□□□ -1.02
ATG4D-208ENST00000588667 KRTAP12-2P59991 146 aa8.66□□□□□ -1.02
ATG4D-208ENST00000588667 MACF1Q9UPN3 7388 aaKnown RBP8.64□□□□□ -1.03
ATG4D-208ENST00000588667 KRTAP10-5P60370 271 aa8.63□□□□□ -1.03
ATG4D-208ENST00000588667 PMAIP1Q13794 54 aa8.59□□□□□ -1.03
ATG4D-208ENST00000588667 PLAC4Q8WY50 150 aa8.59□□□□□ -1.03
ATG4D-208ENST00000588667 KRTAP9-7A8MTY7 169 aa8.49□□□□□ -1.05
ATG4D-208ENST00000588667 SYNE2Q8WXH0 6885 aaKnown RBP8.47□□□□□ -1.05
ATG4D-208ENST00000588667 CAMK2N1Q7Z7J9 78 aa8.47□□□□□ -1.05
ATG4D-208ENST00000588667 PRO2289Q9P1D8 64 aa8.47□□□□□ -1.05
ATG4D-208ENST00000588667 MT1XP80297 61 aa8.43□□□□□ -1.06
ATG4D-208ENST00000588667 ROMO1P60602 79 aa8.34□□□□□ -1.07
ATG4D-208ENST00000588667 KRTAP6-3Q3LI67 103 aa8.26□□□□□ -1.09
ATG4D-208ENST00000588667 C10orf95Q9H7T3 257 aa8.22□□□□□ -1.09
ATG4D-208ENST00000588667 KTN1-AS1Q86SY8 53 aa8.21□□□□□ -1.1
ATG4D-208ENST00000588667 KMT2DO14686 5537 aa8.09□□□□□ -1.11
ATG4D-208ENST00000588667 KRTAP25-1Q3LHN0 102 aa8.06□□□□□ -1.12
ATG4D-208ENST00000588667 KRTAP5-9P26371 169 aa8.05□□□□□ -1.12
ATG4D-208ENST00000588667 KRTAP10-7P60409 375 aaPredicted RBP8.05□□□□□ -1.12
ATG4D-208ENST00000588667 TNP1P09430 55 aa8.04□□□□□ -1.12
ATG4D-208ENST00000588667 KRTAP10-12P60413 245 aa8.02□□□□□ -1.13
ATG4D-208ENST00000588667 PRAC1Q96KF2 57 aa8□□□□□ -1.13
ATG4D-208ENST00000588667 KRTAP8-1Q8IUC2 63 aa7.97□□□□□ -1.13
ATG4D-208ENST00000588667 MUC12Q9UKN1 5478 aa7.96□□□□□ -1.14
ATG4D-208ENST00000588667 NEBP20929 6669 aa7.93□□□□□ -1.14
ATG4D-208ENST00000588667 KRTAP4-8A0A0G2JLE6 195 aa7.93□□□□□ -1.14
ATG4D-208ENST00000588667 KRTAP4-8Q9BYQ9 185 aa7.93□□□□□ -1.14
ATG4D-208ENST00000588667 SPRR2FQ96RM1 72 aa7.88□□□□□ -1.15
ATG4D-208ENST00000588667 SVIPQ8NHG7 77 aa7.87□□□□□ -1.15
ATG4D-208ENST00000588667 MDN1Q9NU22 5596 aa7.8□□□□□ -1.16
ATG4D-208ENST00000588667 KRTAP23-1A1A580 65 aa7.78□□□□□ -1.16
ATG4D-208ENST00000588667 PP632Q6XCG6 107 aa7.78□□□□□ -1.16
ATG4D-208ENST00000588667 SPRR2EP22531 72 aa7.67□□□□□ -1.18
ATG4D-208ENST00000588667 SPRR2BP35325 72 aa7.67□□□□□ -1.18
ATG4D-208ENST00000588667 SPRR2AP35326 72 aa7.67□□□□□ -1.18
ATG4D-208ENST00000588667 LCE3AQ5TA76 89 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms