RNA–Protein interactions for RNA: ENST00000588618.5

ACTN4-210, Transcript of actinin alpha 4, humanhuman

TSL 1 (best)

Gene ACTN4, Length 1,729 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-210ENST00000588618 TMEM258P61165 79 aa11.05□□□□□ -0.64
ACTN4-210ENST00000588618 LCA10Q71F78 164 aa11.04□□□□□ -0.64
ACTN4-210ENST00000588618 ATP5EP56381 51 aaPredicted RBP11.04□□□□□ -0.64
ACTN4-210ENST00000588618 CHKB-CPT1BH3BT56 60 aa11.01□□□□□ -0.65
ACTN4-210ENST00000588618 KRTAP3-3Q9BYR6 98 aa10.97□□□□□ -0.65
ACTN4-210ENST00000588618 LCE2AQ5TA79 106 aaPredicted RBP10.95□□□□□ -0.66
ACTN4-210ENST00000588618 CSAG1Q6PB30 78 aa10.95□□□□□ -0.66
ACTN4-210ENST00000588618 COA5Q86WW8 74 aa10.92□□□□□ -0.66
ACTN4-210ENST00000588618 SPTSSBQ8NFR3 76 aa10.88□□□□□ -0.67
ACTN4-210ENST00000588618 SVIPQ8NHG7 77 aa10.87□□□□□ -0.67
ACTN4-210ENST00000588618 KRTAP10-6P60371 365 aaPredicted RBP10.78□□□□□ -0.68
ACTN4-210ENST00000588618 LORP23490 312 aaPredicted RBP10.71□□□□□ -0.69
ACTN4-210ENST00000588618 SERP1Q9Y6X1 66 aa10.7□□□□□ -0.7
ACTN4-210ENST00000588618 KRTAP9-8Q9BYQ0 159 aa10.64□□□□□ -0.71
ACTN4-210ENST00000588618 H0YAA0 97 aa10.6□□□□□ -0.71
ACTN4-210ENST00000588618 ADM2Q7Z4H4 148 aa10.57□□□□□ -0.72
ACTN4-210ENST00000588618 MT2AP02795 61 aa10.56□□□□□ -0.72
ACTN4-210ENST00000588618 KRTAP10-10P60014 251 aa10.54□□□□□ -0.72
ACTN4-210ENST00000588618 MT1FP04733 61 aa10.5□□□□□ -0.73
ACTN4-210ENST00000588618 SEC61GP60059 68 aa10.5□□□□□ -0.73
ACTN4-210ENST00000588618 KRTAP3-2Q9BYR7 98 aa10.47□□□□□ -0.73
ACTN4-210ENST00000588618 RPS28P62857 69 aaKnown RBP10.44□□□□□ -0.74
ACTN4-210ENST00000588618 P0C880 135 aa10.41□□□□□ -0.74
ACTN4-210ENST00000588618 A0A1B0GU69 56 aa10.39□□□□□ -0.75
ACTN4-210ENST00000588618 SMIM26A0A096LP01 95 aa10.36□□□□□ -0.75
ACTN4-210ENST00000588618 PRR15LQ9BU68 103 aa10.34□□□□□ -0.75
ACTN4-210ENST00000588618 CRIPTQ9P021 101 aa10.34□□□□□ -0.75
ACTN4-210ENST00000588618 LINC01558Q9Y6Z2 57 aa10.34□□□□□ -0.75
ACTN4-210ENST00000588618 V9GYY9 64 aa10.31□□□□□ -0.76
ACTN4-210ENST00000588618 R4GN34 69 aa10.27□□□□□ -0.76
ACTN4-210ENST00000588618 KRTAP9-3Q9BYQ3 159 aa10.27□□□□□ -0.77
ACTN4-210ENST00000588618 Q1T7F1 81 aa10.24□□□□□ -0.77
ACTN4-210ENST00000588618 M0QZ58 72 aa10.21□□□□□ -0.77
ACTN4-210ENST00000588618 A0A1B0GU33 70 aa10.18□□□□□ -0.78
ACTN4-210ENST00000588618 KRTAP19-1Q8IUB9 90 aa10.17□□□□□ -0.78
ACTN4-210ENST00000588618 SPRR2GQ9BYE4 73 aa10.16□□□□□ -0.78
ACTN4-210ENST00000588618 LCE2DQ5TA82 110 aaPredicted RBP10.13□□□□□ -0.79
ACTN4-210ENST00000588618 PSPHP1O15172 72 aa10.12□□□□□ -0.79
ACTN4-210ENST00000588618 KRTAP13-4Q3LI77 160 aa10.1□□□□□ -0.79
ACTN4-210ENST00000588618 LCE2BO14633 110 aa10.07□□□□□ -0.8
ACTN4-210ENST00000588618 LINC01554Q52M75 96 aa10.06□□□□□ -0.8
ACTN4-210ENST00000588618 Q5VV11 94 aa10.02□□□□□ -0.81
ACTN4-210ENST00000588618 USH2AO75445 5202 aa10.01□□□□□ -0.81
ACTN4-210ENST00000588618 SPATA8Q6RVD6 105 aa10.01□□□□□ -0.81
ACTN4-210ENST00000588618 UQCR11O14957 56 aa9.99□□□□□ -0.81
ACTN4-210ENST00000588618 KRTAP9-2Q9BYQ4 174 aa9.99□□□□□ -0.81
ACTN4-210ENST00000588618 KRTAP19-8Q3LI54 63 aa9.93□□□□□ -0.82
ACTN4-210ENST00000588618 A0A0D9SG42 100 aa9.9□□□□□ -0.83
ACTN4-210ENST00000588618 MT1BP07438 61 aa9.87□□□□□ -0.83
ACTN4-210ENST00000588618 A6NED7 52 aa9.85□□□□□ -0.83
ACTN4-210ENST00000588618 MIR22HGQ0VDD5 57 aa9.83□□□□□ -0.84
ACTN4-210ENST00000588618 PLAC4Q8WY50 150 aa9.83□□□□□ -0.84
ACTN4-210ENST00000588618 A8MU10 97 aa9.81□□□□□ -0.84
ACTN4-210ENST00000588618 FSIP2Q5CZC0 6907 aa9.8□□□□□ -0.84
ACTN4-210ENST00000588618 A6NN06 94 aa9.8□□□□□ -0.84
ACTN4-210ENST00000588618 SSPOA2VEC9 5147 aa9.79□□□□□ -0.84
ACTN4-210ENST00000588618 SPINT4Q6UDR6 99 aa9.72□□□□□ -0.85
ACTN4-210ENST00000588618 PRO0628Q9UI54 55 aa9.68□□□□□ -0.86
ACTN4-210ENST00000588618 KRTAP12-1P59990 96 aa9.65□□□□□ -0.86
ACTN4-210ENST00000588618 KRTAP12-2P59991 146 aa9.62□□□□□ -0.87
ACTN4-210ENST00000588618 CAMK2N1Q7Z7J9 78 aa9.59□□□□□ -0.87
ACTN4-210ENST00000588618 CRCT1Q9UGL9 99 aa9.58□□□□□ -0.88
ACTN4-210ENST00000588618 CDC42SE1Q9NRR8 79 aa9.56□□□□□ -0.88
ACTN4-210ENST00000588618 K7ERS5 55 aa9.55□□□□□ -0.88
ACTN4-210ENST00000588618 KRTAP19-6Q3LI70 58 aa9.54□□□□□ -0.88
ACTN4-210ENST00000588618 PRO2289Q9P1D8 64 aa9.51□□□□□ -0.89
ACTN4-210ENST00000588618 KRTAP10-5P60370 271 aa9.45□□□□□ -0.9
ACTN4-210ENST00000588618 MT1XP80297 61 aa9.45□□□□□ -0.9
ACTN4-210ENST00000588618 BRK1Q8WUW1 75 aa9.42□□□□□ -0.9
ACTN4-210ENST00000588618 FCGBPQ9Y6R7 5405 aaPredicted RBP9.39□□□□□ -0.91
ACTN4-210ENST00000588618 KRTAP9-6A0A140TA67 174 aa9.39□□□□□ -0.91
ACTN4-210ENST00000588618 C10orf95Q9H7T3 257 aa9.17□□□□□ -0.94
ACTN4-210ENST00000588618 PMAIP1Q13794 54 aa9.08□□□□□ -0.96
ACTN4-210ENST00000588618 KRTAP10-7P60409 375 aaPredicted RBP9.06□□□□□ -0.96
ACTN4-210ENST00000588618 TNP1P09430 55 aa9.03□□□□□ -0.96
ACTN4-210ENST00000588618 KMT2DO14686 5537 aa9.01□□□□□ -0.97
ACTN4-210ENST00000588618 ROMO1P60602 79 aa9□□□□□ -0.97
ACTN4-210ENST00000588618 MACF1Q9UPN3 7388 aaKnown RBP8.97□□□□□ -0.97
ACTN4-210ENST00000588618 KRTAP10-12P60413 245 aa8.94□□□□□ -0.98
ACTN4-210ENST00000588618 KRTAP25-1Q3LHN0 102 aa8.89□□□□□ -0.99
ACTN4-210ENST00000588618 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.86□□□□□ -0.99
ACTN4-210ENST00000588618 KTN1-AS1Q86SY8 53 aa8.84□□□□□ -0.99
ACTN4-210ENST00000588618 KRTAP4-8A0A0G2JLE6 195 aa8.83□□□□□ -1
ACTN4-210ENST00000588618 KRTAP4-8Q9BYQ9 185 aa8.83□□□□□ -1
ACTN4-210ENST00000588618 KRTAP8-1Q8IUC2 63 aa8.73□□□□□ -1.01
ACTN4-210ENST00000588618 SYNE2Q8WXH0 6885 aaKnown RBP8.69□□□□□ -1.02
ACTN4-210ENST00000588618 LCE3AQ5TA76 89 aa8.66□□□□□ -1.02
ACTN4-210ENST00000588618 KRTAP23-1A1A580 65 aa8.57□□□□□ -1.04
ACTN4-210ENST00000588618 KRTAP9-7A8MTY7 169 aa8.54□□□□□ -1.04
ACTN4-210ENST00000588618 KRTAP6-3Q3LI67 103 aa8.54□□□□□ -1.04
ACTN4-210ENST00000588618 PP632Q6XCG6 107 aa8.52□□□□□ -1.05
ACTN4-210ENST00000588618 SPRR2FQ96RM1 72 aa8.5□□□□□ -1.05
ACTN4-210ENST00000588618 KRTAP5-9P26371 169 aa8.47□□□□□ -1.05
ACTN4-210ENST00000588618 KRTAP19-7Q3SYF9 63 aa8.45□□□□□ -1.06
ACTN4-210ENST00000588618 MUC12Q9UKN1 5478 aa8.44□□□□□ -1.06
ACTN4-210ENST00000588618 KRTAP19-5Q3LI72 72 aa8.43□□□□□ -1.06
ACTN4-210ENST00000588618 PRAC1Q96KF2 57 aa8.37□□□□□ -1.07
ACTN4-210ENST00000588618 KRTAP12-3P60328 96 aa8.34□□□□□ -1.07
ACTN4-210ENST00000588618 MT1EP04732 61 aa8.3□□□□□ -1.08
ACTN4-210ENST00000588618 MDN1Q9NU22 5596 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms