RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ACYP2P14621 99 aa12.37□□□□□ -0.43
SHMT1-207ENST00000580002 LCA10Q71F78 164 aa12.29□□□□□ -0.44
SHMT1-207ENST00000580002 COA5Q86WW8 74 aa12.29□□□□□ -0.44
SHMT1-207ENST00000580002 KRTAP3-3Q9BYR6 98 aa12.26□□□□□ -0.45
SHMT1-207ENST00000580002 S4R3F8 94 aa12.26□□□□□ -0.45
SHMT1-207ENST00000580002 MT1HP80294 61 aa12.23□□□□□ -0.45
SHMT1-207ENST00000580002 SMIM26A0A096LP01 95 aa12.18□□□□□ -0.46
SHMT1-207ENST00000580002 CHKB-CPT1BH3BT56 60 aa12.17□□□□□ -0.46
SHMT1-207ENST00000580002 M0R2T5 61 aa12.03□□□□□ -0.48
SHMT1-207ENST00000580002 CSAG1Q6PB30 78 aa12.01□□□□□ -0.49
SHMT1-207ENST00000580002 LCE2AQ5TA79 106 aaPredicted RBP11.97□□□□□ -0.49
SHMT1-207ENST00000580002 Q1T7F1 81 aa11.92□□□□□ -0.5
SHMT1-207ENST00000580002 V9GYY9 64 aa11.9□□□□□ -0.5
SHMT1-207ENST00000580002 SPTSSBQ8NFR3 76 aa11.89□□□□□ -0.51
SHMT1-207ENST00000580002 KRTAP10-6P60371 365 aaPredicted RBP11.82□□□□□ -0.52
SHMT1-207ENST00000580002 LORP23490 312 aaPredicted RBP11.75□□□□□ -0.53
SHMT1-207ENST00000580002 KRTAP9-8Q9BYQ0 159 aa11.75□□□□□ -0.53
SHMT1-207ENST00000580002 KRTAP3-2Q9BYR7 98 aa11.74□□□□□ -0.53
SHMT1-207ENST00000580002 LINC01558Q9Y6Z2 57 aa11.74□□□□□ -0.53
SHMT1-207ENST00000580002 ADM2Q7Z4H4 148 aa11.74□□□□□ -0.53
SHMT1-207ENST00000580002 P0C880 135 aa11.69□□□□□ -0.54
SHMT1-207ENST00000580002 MT2AP02795 61 aa11.68□□□□□ -0.54
SHMT1-207ENST00000580002 H0YAA0 97 aa11.64□□□□□ -0.55
SHMT1-207ENST00000580002 PRR15LQ9BU68 103 aa11.64□□□□□ -0.55
SHMT1-207ENST00000580002 PSPHP1O15172 72 aa11.63□□□□□ -0.55
SHMT1-207ENST00000580002 MT1FP04733 61 aa11.63□□□□□ -0.55
SHMT1-207ENST00000580002 A0A1B0GU69 56 aa11.58□□□□□ -0.56
SHMT1-207ENST00000580002 Q5VV11 94 aa11.56□□□□□ -0.56
SHMT1-207ENST00000580002 KRTAP10-10P60014 251 aa11.54□□□□□ -0.56
SHMT1-207ENST00000580002 SEC61GP60059 68 aa11.53□□□□□ -0.56
SHMT1-207ENST00000580002 SVIPQ8NHG7 77 aa11.39□□□□□ -0.59
SHMT1-207ENST00000580002 KRTAP13-4Q3LI77 160 aa11.37□□□□□ -0.59
SHMT1-207ENST00000580002 A0A1B0GU33 70 aa11.36□□□□□ -0.59
SHMT1-207ENST00000580002 KRTAP9-3Q9BYQ3 159 aa11.33□□□□□ -0.59
SHMT1-207ENST00000580002 A6NED7 52 aa11.31□□□□□ -0.6
SHMT1-207ENST00000580002 SPATA8Q6RVD6 105 aa11.31□□□□□ -0.6
SHMT1-207ENST00000580002 KRTAP19-1Q8IUB9 90 aa11.29□□□□□ -0.6
SHMT1-207ENST00000580002 M0QZ58 72 aa11.28□□□□□ -0.6
SHMT1-207ENST00000580002 BRK1Q8WUW1 75 aa11.28□□□□□ -0.6
SHMT1-207ENST00000580002 R4GN34 69 aa11.27□□□□□ -0.61
SHMT1-207ENST00000580002 CRIPTQ9P021 101 aa11.22□□□□□ -0.61
SHMT1-207ENST00000580002 UQCR11O14957 56 aa11.21□□□□□ -0.62
SHMT1-207ENST00000580002 SPRR2GQ9BYE4 73 aa11.19□□□□□ -0.62
SHMT1-207ENST00000580002 CDC42SE1Q9NRR8 79 aa11.17□□□□□ -0.62
SHMT1-207ENST00000580002 LINC01554Q52M75 96 aa11.16□□□□□ -0.62
SHMT1-207ENST00000580002 PRO0628Q9UI54 55 aa11.13□□□□□ -0.63
SHMT1-207ENST00000580002 LCE2BO14633 110 aa11.12□□□□□ -0.63
SHMT1-207ENST00000580002 A8MU10 97 aa11.11□□□□□ -0.63
SHMT1-207ENST00000580002 A0A0D9SG42 100 aa11.1□□□□□ -0.63
SHMT1-207ENST00000580002 MIR22HGQ0VDD5 57 aa11.07□□□□□ -0.64
SHMT1-207ENST00000580002 USH2AO75445 5202 aa10.97□□□□□ -0.65
SHMT1-207ENST00000580002 KRTAP19-8Q3LI54 63 aa10.96□□□□□ -0.65
SHMT1-207ENST00000580002 MT1BP07438 61 aa10.93□□□□□ -0.66
SHMT1-207ENST00000580002 LCE2DQ5TA82 110 aaPredicted RBP10.93□□□□□ -0.66
SHMT1-207ENST00000580002 KRTAP12-1P59990 96 aa10.85□□□□□ -0.67
SHMT1-207ENST00000580002 KRTAP12-2P59991 146 aa10.84□□□□□ -0.67
SHMT1-207ENST00000580002 SPINT4Q6UDR6 99 aa10.82□□□□□ -0.68
SHMT1-207ENST00000580002 FSIP2Q5CZC0 6907 aa10.79□□□□□ -0.68
SHMT1-207ENST00000580002 A6NN06 94 aa10.76□□□□□ -0.69
SHMT1-207ENST00000580002 KRTAP9-2Q9BYQ4 174 aa10.76□□□□□ -0.69
SHMT1-207ENST00000580002 PLAC4Q8WY50 150 aa10.71□□□□□ -0.69
SHMT1-207ENST00000580002 SSPOA2VEC9 5147 aa10.7□□□□□ -0.7
SHMT1-207ENST00000580002 PMAIP1Q13794 54 aa10.67□□□□□ -0.7
SHMT1-207ENST00000580002 K7ERS5 55 aa10.59□□□□□ -0.71
SHMT1-207ENST00000580002 CAMK2N1Q7Z7J9 78 aa10.52□□□□□ -0.73
SHMT1-207ENST00000580002 MT1XP80297 61 aa10.49□□□□□ -0.73
SHMT1-207ENST00000580002 KRTAP10-5P60370 271 aa10.46□□□□□ -0.74
SHMT1-207ENST00000580002 KRTAP19-6Q3LI70 58 aa10.41□□□□□ -0.74
SHMT1-207ENST00000580002 C10orf95Q9H7T3 257 aa10.32□□□□□ -0.76
SHMT1-207ENST00000580002 KTN1-AS1Q86SY8 53 aa10.31□□□□□ -0.76
SHMT1-207ENST00000580002 CRCT1Q9UGL9 99 aa10.3□□□□□ -0.76
SHMT1-207ENST00000580002 FCGBPQ9Y6R7 5405 aaPredicted RBP10.26□□□□□ -0.77
SHMT1-207ENST00000580002 PRO2289Q9P1D8 64 aa10.22□□□□□ -0.77
SHMT1-207ENST00000580002 ROMO1P60602 79 aa10.14□□□□□ -0.79
SHMT1-207ENST00000580002 KRTAP10-7P60409 375 aaPredicted RBP10.1□□□□□ -0.79
SHMT1-207ENST00000580002 KRTAP9-6A0A140TA67 174 aa10.01□□□□□ -0.81
SHMT1-207ENST00000580002 KMT2DO14686 5537 aa9.94□□□□□ -0.82
SHMT1-207ENST00000580002 PRAC1Q96KF2 57 aa9.93□□□□□ -0.82
SHMT1-207ENST00000580002 TNP1P09430 55 aa9.93□□□□□ -0.82
SHMT1-207ENST00000580002 KRTAP10-12P60413 245 aa9.9□□□□□ -0.82
SHMT1-207ENST00000580002 KRTAP4-8A0A0G2JLE6 195 aa9.83□□□□□ -0.84
SHMT1-207ENST00000580002 KRTAP4-8Q9BYQ9 185 aa9.83□□□□□ -0.84
SHMT1-207ENST00000580002 KRTAP25-1Q3LHN0 102 aa9.82□□□□□ -0.84
SHMT1-207ENST00000580002 MACF1Q9UPN3 7388 aaKnown RBP9.82□□□□□ -0.84
SHMT1-207ENST00000580002 LCE3AQ5TA76 89 aa9.7□□□□□ -0.86
SHMT1-207ENST00000580002 SYNE2Q8WXH0 6885 aaKnown RBP9.61□□□□□ -0.87
SHMT1-207ENST00000580002 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.56□□□□□ -0.88
SHMT1-207ENST00000580002 KRTAP8-1Q8IUC2 63 aa9.5□□□□□ -0.89
SHMT1-207ENST00000580002 KRTAP23-1A1A580 65 aa9.43□□□□□ -0.9
SHMT1-207ENST00000580002 KRTAP19-5Q3LI72 72 aa9.42□□□□□ -0.9
SHMT1-207ENST00000580002 PP632Q6XCG6 107 aa9.4□□□□□ -0.9
SHMT1-207ENST00000580002 KRTAP19-7Q3SYF9 63 aa9.37□□□□□ -0.91
SHMT1-207ENST00000580002 KRTAP12-3P60328 96 aa9.26□□□□□ -0.93
SHMT1-207ENST00000580002 MUC12Q9UKN1 5478 aa9.26□□□□□ -0.93
SHMT1-207ENST00000580002 SPRR2FQ96RM1 72 aa9.25□□□□□ -0.93
SHMT1-207ENST00000580002 KRTAP5-9P26371 169 aa9.2□□□□□ -0.94
SHMT1-207ENST00000580002 MT1EP04732 61 aa9.19□□□□□ -0.94
SHMT1-207ENST00000580002 KRTAP6-3Q3LI67 103 aa9.19□□□□□ -0.94
SHMT1-207ENST00000580002 KRTAP9-7A8MTY7 169 aa9.13□□□□□ -0.95
SHMT1-207ENST00000580002 MDN1Q9NU22 5596 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms