RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 BIRC6Q9NR09 4857 aa7.23□□□□□ -1.25
VPS33B-208ENST00000574755 UQCR11O14957 56 aa7.23□□□□□ -1.25
VPS33B-208ENST00000574755 PMAIP1Q13794 54 aa7.22□□□□□ -1.25
VPS33B-208ENST00000574755 LRP2P98164 4655 aa7.2□□□□□ -1.26
VPS33B-208ENST00000574755 LPAP08519 4548 aa7.19□□□□□ -1.26
VPS33B-208ENST00000574755 MIR22HGQ0VDD5 57 aa7.18□□□□□ -1.26
VPS33B-208ENST00000574755 HERC2O95714 4834 aa7.18□□□□□ -1.26
VPS33B-208ENST00000574755 SPATA8Q6RVD6 105 aa7.17□□□□□ -1.26
VPS33B-208ENST00000574755 J3QL48 77 aa7.16□□□□□ -1.26
VPS33B-208ENST00000574755 S4R3F8 94 aa7.11□□□□□ -1.27
VPS33B-208ENST00000574755 KRTAP3-3Q9BYR6 98 aa7.1□□□□□ -1.27
VPS33B-208ENST00000574755 A6NN06 94 aa7.09□□□□□ -1.28
VPS33B-208ENST00000574755 A0A1B0GU33 70 aa7.07□□□□□ -1.28
VPS33B-208ENST00000574755 H1FX-AS1Q4G0G2 97 aa7.07□□□□□ -1.28
VPS33B-208ENST00000574755 RBM12B-AS1Q9P1G2 102 aa7.06□□□□□ -1.28
VPS33B-208ENST00000574755 H0YAA0 97 aa7.03□□□□□ -1.28
VPS33B-208ENST00000574755 PCLOQ9Y6V0 5065 aa7.03□□□□□ -1.28
VPS33B-208ENST00000574755 SEC61BP60468 96 aaKnown RBP7.02□□□□□ -1.29
VPS33B-208ENST00000574755 KTN1-AS1Q86SY8 53 aa6.98□□□□□ -1.29
VPS33B-208ENST00000574755 HERC1Q15751 4861 aa6.96□□□□□ -1.3
VPS33B-208ENST00000574755 KRTAP10-6P60371 365 aaPredicted RBP6.95□□□□□ -1.3
VPS33B-208ENST00000574755 KRTAP3-2Q9BYR7 98 aa6.92□□□□□ -1.3
VPS33B-208ENST00000574755 CSAG1Q6PB30 78 aa6.9□□□□□ -1.3
VPS33B-208ENST00000574755 MUC17Q685J3 4493 aa6.9□□□□□ -1.3
VPS33B-208ENST00000574755 KRTAP4-1Q9BYQ7 146 aa6.88□□□□□ -1.31
VPS33B-208ENST00000574755 P0C880 135 aa6.87□□□□□ -1.31
VPS33B-208ENST00000574755 ADM2Q7Z4H4 148 aa6.86□□□□□ -1.31
VPS33B-208ENST00000574755 KRTAP13-4Q3LI77 160 aa6.83□□□□□ -1.32
VPS33B-208ENST00000574755 K7ERS5 55 aa6.79□□□□□ -1.32
VPS33B-208ENST00000574755 A0A0D9SG42 100 aa6.77□□□□□ -1.32
VPS33B-208ENST00000574755 PRAC1Q96KF2 57 aa6.74□□□□□ -1.33
VPS33B-208ENST00000574755 MUC2Q02817 5179 aa6.74□□□□□ -1.33
VPS33B-208ENST00000574755 HMCN2Q8NDA2 5059 aa6.71□□□□□ -1.33
VPS33B-208ENST00000574755 KRTAP19-2Q3LHN2 52 aa6.71□□□□□ -1.34
VPS33B-208ENST00000574755 M0QZ58 72 aa6.67□□□□□ -1.34
VPS33B-208ENST00000574755 R4GN34 69 aa6.6□□□□□ -1.35
VPS33B-208ENST00000574755 KRTAP12-2P59991 146 aa6.6□□□□□ -1.35
VPS33B-208ENST00000574755 SPINT4Q6UDR6 99 aa6.58□□□□□ -1.36
VPS33B-208ENST00000574755 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
VPS33B-208ENST00000574755 ROMO1P60602 79 aa6.55□□□□□ -1.36
VPS33B-208ENST00000574755 UBR4Q5T4S7 5183 aa6.55□□□□□ -1.36
VPS33B-208ENST00000574755 LINC01554Q52M75 96 aa6.54□□□□□ -1.36
VPS33B-208ENST00000574755 LORP23490 312 aaPredicted RBP6.53□□□□□ -1.36
VPS33B-208ENST00000574755 FLGP20930 4061 aaPredicted RBP6.53□□□□□ -1.36
VPS33B-208ENST00000574755 RNF213Q63HN8 5207 aa6.49□□□□□ -1.37
VPS33B-208ENST00000574755 KRTAP25-1Q3LHN0 102 aa6.46□□□□□ -1.37
VPS33B-208ENST00000574755 CRIPTQ9P021 101 aa6.46□□□□□ -1.37
VPS33B-208ENST00000574755 LCE2CQ5TA81 110 aa6.44□□□□□ -1.38
VPS33B-208ENST00000574755 FAT4Q6V0I7 4981 aa6.43□□□□□ -1.38
VPS33B-208ENST00000574755 M0R2T5 61 aa6.33□□□□□ -1.4
VPS33B-208ENST00000574755 MT1HP80294 61 aa6.3□□□□□ -1.4
VPS33B-208ENST00000574755 C10orf95Q9H7T3 257 aa6.29□□□□□ -1.4
VPS33B-208ENST00000574755 CAMK2N1Q7Z7J9 78 aa6.23□□□□□ -1.41
VPS33B-208ENST00000574755 SPRR2GQ9BYE4 73 aa6.15□□□□□ -1.43
VPS33B-208ENST00000574755 MT2AP02795 61 aa6.13□□□□□ -1.43
VPS33B-208ENST00000574755 KRTAP10-10P60014 251 aa6.12□□□□□ -1.43
VPS33B-208ENST00000574755 MT1FP04733 61 aa6.11□□□□□ -1.43
VPS33B-208ENST00000574755 KRTAP19-1Q8IUB9 90 aa6.11□□□□□ -1.43
VPS33B-208ENST00000574755 KRTAP9-8Q9BYQ0 159 aa6.11□□□□□ -1.43
VPS33B-208ENST00000574755 PLAC4Q8WY50 150 aa6.05□□□□□ -1.44
VPS33B-208ENST00000574755 H3BS24 57 aa6.04□□□□□ -1.44
VPS33B-208ENST00000574755 TNP1P09430 55 aa5.95□□□□□ -1.46
VPS33B-208ENST00000574755 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
VPS33B-208ENST00000574755 KRTAP19-8Q3LI54 63 aa5.91□□□□□ -1.46
VPS33B-208ENST00000574755 KRTAP9-3Q9BYQ3 159 aa5.86□□□□□ -1.47
VPS33B-208ENST00000574755 MT1BP07438 61 aa5.84□□□□□ -1.47
VPS33B-208ENST00000574755 KRTAP15-1Q3LI76 137 aa5.8□□□□□ -1.48
VPS33B-208ENST00000574755 KRTAP23-1A1A580 65 aa5.79□□□□□ -1.48
VPS33B-208ENST00000574755 LCE2AQ5TA79 106 aaPredicted RBP5.79□□□□□ -1.48
VPS33B-208ENST00000574755 KRTAP10-5P60370 271 aa5.74□□□□□ -1.49
VPS33B-208ENST00000574755 MT1XP80297 61 aa5.73□□□□□ -1.49
VPS33B-208ENST00000574755 LCE2BO14633 110 aa5.67□□□□□ -1.5
VPS33B-208ENST00000574755 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
VPS33B-208ENST00000574755 PRO2289Q9P1D8 64 aa5.63□□□□□ -1.51
VPS33B-208ENST00000574755 USH2AO75445 5202 aa5.6□□□□□ -1.51
VPS33B-208ENST00000574755 KRTAP10-12P60413 245 aa5.56□□□□□ -1.52
VPS33B-208ENST00000574755 KRTAP10-7P60409 375 aaPredicted RBP5.55□□□□□ -1.52
VPS33B-208ENST00000574755 NDUFAF8A1L188 74 aa5.55□□□□□ -1.52
VPS33B-208ENST00000574755 KRTAP8-1Q8IUC2 63 aa5.51□□□□□ -1.53
VPS33B-208ENST00000574755 FSIP2Q5CZC0 6907 aa5.48□□□□□ -1.53
VPS33B-208ENST00000574755 LUZP6Q538Z0 58 aa5.41□□□□□ -1.54
VPS33B-208ENST00000574755 KRTAP12-3P60328 96 aa5.41□□□□□ -1.54
VPS33B-208ENST00000574755 SPRR5A0A1B0GTR4 108 aa5.37□□□□□ -1.55
VPS33B-208ENST00000574755 KMT2DO14686 5537 aa5.31□□□□□ -1.56
VPS33B-208ENST00000574755 SSPOA2VEC9 5147 aa5.3□□□□□ -1.56
VPS33B-208ENST00000574755 KRTAP4-8A0A0G2JLE6 195 aa5.27□□□□□ -1.57
VPS33B-208ENST00000574755 KRTAP4-8Q9BYQ9 185 aa5.27□□□□□ -1.57
VPS33B-208ENST00000574755 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
VPS33B-208ENST00000574755 KRTAP19-6Q3LI70 58 aa5.2□□□□□ -1.58
VPS33B-208ENST00000574755 KRTAP19-7Q3SYF9 63 aa5.11□□□□□ -1.59
VPS33B-208ENST00000574755 LCE2DQ5TA82 110 aaPredicted RBP5.09□□□□□ -1.59
VPS33B-208ENST00000574755 LCE3CQ5T5A8 94 aa5.07□□□□□ -1.6
VPS33B-208ENST00000574755 FCGBPQ9Y6R7 5405 aaPredicted RBP5.03□□□□□ -1.6
VPS33B-208ENST00000574755 A0A0A0MQY5 61 aa5.02□□□□□ -1.61
VPS33B-208ENST00000574755 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
VPS33B-208ENST00000574755 MT1EP04732 61 aa4.99□□□□□ -1.61
VPS33B-208ENST00000574755 MT1LQ93083 61 aa4.94□□□□□ -1.62
VPS33B-208ENST00000574755 KRTAP19-4Q3LI73 84 aa4.91□□□□□ -1.62
VPS33B-208ENST00000574755 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.62
VPS33B-208ENST00000574755 MACF1Q9UPN3 7388 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms