RNA–Protein interactions for RNA: ENST00000573600.5

CTDNEP1-208, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CTDNEP1, Length 1,724 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-208ENST00000573600 Q5VV11 94 aa14.66□□□□□ -0.06
CTDNEP1-208ENST00000573600 S4R3F8 94 aa14.61□□□□□ -0.07
CTDNEP1-208ENST00000573600 KRTAP4-1Q9BYQ7 146 aa14.6□□□□□ -0.07
CTDNEP1-208ENST00000573600 A0A1B0GU69 56 aa14.58□□□□□ -0.07
CTDNEP1-208ENST00000573600 HMCN2Q8NDA2 5059 aa14.58□□□□□ -0.08
CTDNEP1-208ENST00000573600 LCA10Q71F78 164 aa14.55□□□□□ -0.08
CTDNEP1-208ENST00000573600 KRTAP3-3Q9BYR6 98 aa14.5□□□□□ -0.09
CTDNEP1-208ENST00000573600 SEC61GP60059 68 aa14.47□□□□□ -0.09
CTDNEP1-208ENST00000573600 A6NED7 52 aa14.35□□□□□ -0.11
CTDNEP1-208ENST00000573600 BRK1Q8WUW1 75 aa14.33□□□□□ -0.12
CTDNEP1-208ENST00000573600 CSAG1Q6PB30 78 aa14.27□□□□□ -0.13
CTDNEP1-208ENST00000573600 KRTAP19-2Q3LHN2 52 aa14.26□□□□□ -0.13
CTDNEP1-208ENST00000573600 UQCR11O14957 56 aa14.18□□□□□ -0.14
CTDNEP1-208ENST00000573600 CDC42SE1Q9NRR8 79 aa14.14□□□□□ -0.15
CTDNEP1-208ENST00000573600 PRO0628Q9UI54 55 aa14.12□□□□□ -0.15
CTDNEP1-208ENST00000573600 UBR4Q5T4S7 5183 aa14.11□□□□□ -0.15
CTDNEP1-208ENST00000573600 A0A1B0GU33 70 aa14.07□□□□□ -0.16
CTDNEP1-208ENST00000573600 KRTAP10-6P60371 365 aaPredicted RBP14.04□□□□□ -0.16
CTDNEP1-208ENST00000573600 KRTAP3-2Q9BYR7 98 aa14.04□□□□□ -0.16
CTDNEP1-208ENST00000573600 MIR22HGQ0VDD5 57 aa14.03□□□□□ -0.16
CTDNEP1-208ENST00000573600 SPATA8Q6RVD6 105 aa14.03□□□□□ -0.16
CTDNEP1-208ENST00000573600 A8MU10 97 aa14□□□□□ -0.17
CTDNEP1-208ENST00000573600 MUC2Q02817 5179 aa13.99□□□□□ -0.17
CTDNEP1-208ENST00000573600 H0YAA0 97 aa13.98□□□□□ -0.17
CTDNEP1-208ENST00000573600 ADM2Q7Z4H4 148 aa13.97□□□□□ -0.17
CTDNEP1-208ENST00000573600 LCE2DQ5TA82 110 aaPredicted RBP13.96□□□□□ -0.17
CTDNEP1-208ENST00000573600 P0C880 135 aa13.89□□□□□ -0.19
CTDNEP1-208ENST00000573600 FLGP20930 4061 aaPredicted RBP13.86□□□□□ -0.19
CTDNEP1-208ENST00000573600 LCE2CQ5TA81 110 aa13.84□□□□□ -0.19
CTDNEP1-208ENST00000573600 RNF213Q63HN8 5207 aa13.82□□□□□ -0.2
CTDNEP1-208ENST00000573600 KRTAP13-4Q3LI77 160 aa13.66□□□□□ -0.22
CTDNEP1-208ENST00000573600 M0QZ58 72 aa13.62□□□□□ -0.23
CTDNEP1-208ENST00000573600 MT1HP80294 61 aa13.57□□□□□ -0.24
CTDNEP1-208ENST00000573600 PMAIP1Q13794 54 aa13.56□□□□□ -0.24
CTDNEP1-208ENST00000573600 M0R2T5 61 aa13.5□□□□□ -0.25
CTDNEP1-208ENST00000573600 R4GN34 69 aa13.47□□□□□ -0.25
CTDNEP1-208ENST00000573600 A0A0D9SG42 100 aa13.44□□□□□ -0.26
CTDNEP1-208ENST00000573600 A6NN06 94 aa13.44□□□□□ -0.26
CTDNEP1-208ENST00000573600 FAT4Q6V0I7 4981 aa13.42□□□□□ -0.26
CTDNEP1-208ENST00000573600 K7ERS5 55 aa13.4□□□□□ -0.26
CTDNEP1-208ENST00000573600 LORP23490 312 aaPredicted RBP13.4□□□□□ -0.26
CTDNEP1-208ENST00000573600 SVIPQ8NHG7 77 aa13.34□□□□□ -0.27
CTDNEP1-208ENST00000573600 CRIPTQ9P021 101 aa13.33□□□□□ -0.28
CTDNEP1-208ENST00000573600 LINC01554Q52M75 96 aa13.2□□□□□ -0.3
CTDNEP1-208ENST00000573600 KRTAP12-1P59990 96 aa13.18□□□□□ -0.3
CTDNEP1-208ENST00000573600 KRTAP12-2P59991 146 aa13.14□□□□□ -0.31
CTDNEP1-208ENST00000573600 SPINT4Q6UDR6 99 aa13.14□□□□□ -0.31
CTDNEP1-208ENST00000573600 KRTAP9-8Q9BYQ0 159 aa13.1□□□□□ -0.31
CTDNEP1-208ENST00000573600 MT2AP02795 61 aa13.08□□□□□ -0.32
CTDNEP1-208ENST00000573600 KTN1-AS1Q86SY8 53 aa13.06□□□□□ -0.32
CTDNEP1-208ENST00000573600 KRTAP10-10P60014 251 aa13□□□□□ -0.33
CTDNEP1-208ENST00000573600 MT1FP04733 61 aa12.99□□□□□ -0.33
CTDNEP1-208ENST00000573600 LCE2AQ5TA79 106 aaPredicted RBP12.99□□□□□ -0.33
CTDNEP1-208ENST00000573600 SPRR2GQ9BYE4 73 aa12.95□□□□□ -0.34
CTDNEP1-208ENST00000573600 KRTAP19-1Q8IUB9 90 aa12.85□□□□□ -0.35
CTDNEP1-208ENST00000573600 ROMO1P60602 79 aa12.85□□□□□ -0.35
CTDNEP1-208ENST00000573600 CAMK2N1Q7Z7J9 78 aa12.65□□□□□ -0.38
CTDNEP1-208ENST00000573600 PRAC1Q96KF2 57 aa12.64□□□□□ -0.39
CTDNEP1-208ENST00000573600 KRTAP9-3Q9BYQ3 159 aa12.62□□□□□ -0.39
CTDNEP1-208ENST00000573600 PLAC4Q8WY50 150 aa12.6□□□□□ -0.39
CTDNEP1-208ENST00000573600 KRTAP19-8Q3LI54 63 aa12.57□□□□□ -0.4
CTDNEP1-208ENST00000573600 C10orf95Q9H7T3 257 aa12.45□□□□□ -0.42
CTDNEP1-208ENST00000573600 KRTAP9-2Q9BYQ4 174 aa12.4□□□□□ -0.43
CTDNEP1-208ENST00000573600 MT1BP07438 61 aa12.36□□□□□ -0.43
CTDNEP1-208ENST00000573600 KRTAP25-1Q3LHN0 102 aa12.35□□□□□ -0.43
CTDNEP1-208ENST00000573600 LCE2BO14633 110 aa12.21□□□□□ -0.45
CTDNEP1-208ENST00000573600 TNP1P09430 55 aa12.08□□□□□ -0.47
CTDNEP1-208ENST00000573600 MT1XP80297 61 aa12□□□□□ -0.49
CTDNEP1-208ENST00000573600 KRTAP10-5P60370 271 aa12□□□□□ -0.49
CTDNEP1-208ENST00000573600 PRO2289Q9P1D8 64 aa11.92□□□□□ -0.5
CTDNEP1-208ENST00000573600 PP632Q6XCG6 107 aa11.86□□□□□ -0.51
CTDNEP1-208ENST00000573600 KRTAP9-6A0A140TA67 174 aa11.86□□□□□ -0.51
CTDNEP1-208ENST00000573600 KRTAP23-1A1A580 65 aa11.8□□□□□ -0.52
CTDNEP1-208ENST00000573600 USH2AO75445 5202 aa11.76□□□□□ -0.53
CTDNEP1-208ENST00000573600 FSIP2Q5CZC0 6907 aa11.75□□□□□ -0.53
CTDNEP1-208ENST00000573600 CRCT1Q9UGL9 99 aa11.72□□□□□ -0.53
CTDNEP1-208ENST00000573600 KRTAP10-7P60409 375 aaPredicted RBP11.53□□□□□ -0.56
CTDNEP1-208ENST00000573600 KRTAP10-12P60413 245 aa11.49□□□□□ -0.57
CTDNEP1-208ENST00000573600 LCE3AQ5TA76 89 aa11.49□□□□□ -0.57
CTDNEP1-208ENST00000573600 KRTAP19-6Q3LI70 58 aa11.46□□□□□ -0.58
CTDNEP1-208ENST00000573600 SSPOA2VEC9 5147 aa11.38□□□□□ -0.59
CTDNEP1-208ENST00000573600 KRTAP8-1Q8IUC2 63 aa11.29□□□□□ -0.6
CTDNEP1-208ENST00000573600 FCGBPQ9Y6R7 5405 aaPredicted RBP11.05□□□□□ -0.64
CTDNEP1-208ENST00000573600 KRTAP12-3P60328 96 aa11.04□□□□□ -0.64
CTDNEP1-208ENST00000573600 KRTAP4-8A0A0G2JLE6 195 aa11.01□□□□□ -0.65
CTDNEP1-208ENST00000573600 KRTAP4-8Q9BYQ9 185 aa11.01□□□□□ -0.65
CTDNEP1-208ENST00000573600 KRTAP15-1Q3LI76 137 aa10.95□□□□□ -0.66
CTDNEP1-208ENST00000573600 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.94□□□□□ -0.66
CTDNEP1-208ENST00000573600 KRTAP19-5Q3LI72 72 aa10.89□□□□□ -0.67
CTDNEP1-208ENST00000573600 KMT2DO14686 5537 aa10.83□□□□□ -0.68
CTDNEP1-208ENST00000573600 KRTAP19-7Q3SYF9 63 aa10.71□□□□□ -0.69
CTDNEP1-208ENST00000573600 KRTAP9-7A8MTY7 169 aa10.7□□□□□ -0.7
CTDNEP1-208ENST00000573600 H3BS24 57 aa10.64□□□□□ -0.71
CTDNEP1-208ENST00000573600 MACF1Q9UPN3 7388 aaKnown RBP10.56□□□□□ -0.72
CTDNEP1-208ENST00000573600 SPRR5A0A1B0GTR4 108 aa10.55□□□□□ -0.72
CTDNEP1-208ENST00000573600 MT1EP04732 61 aa10.52□□□□□ -0.73
CTDNEP1-208ENST00000573600 SYNE2Q8WXH0 6885 aaKnown RBP10.41□□□□□ -0.74
CTDNEP1-208ENST00000573600 KRTAP19-4Q3LI73 84 aa10.4□□□□□ -0.74
CTDNEP1-208ENST00000573600 MT1LQ93083 61 aa10.34□□□□□ -0.75
CTDNEP1-208ENST00000573600 LCE3CQ5T5A8 94 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms