RNA–Protein interactions for RNA: ENST00000573600.5

CTDNEP1-208, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CTDNEP1, Length 1,724 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-208ENST00000573600 HNRNPKP61978 463 aaKnown RBP eCLIP27.71■■■□□ 2.033e-48■■■■■ 50.4
CTDNEP1-208ENST00000573600 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.91■■□□□ 1.745e-26■■□□□ 14.3
CTDNEP1-208ENST00000573600 GTF2F1P35269 517 aaKnown RBP eCLIP31.58■■■□□ 2.657e-25■□□□□ 11
CTDNEP1-208ENST00000573600 PUM1Q14671 1186 aaKnown RBP eCLIP27.24■■□□□ 1.956e-18■■□□□ 12.7
CTDNEP1-208ENST00000573600 EIF3DO15371 548 aaKnown RBP eCLIP32.19■■■□□ 2.743e-16■□□□□ 8.3
CTDNEP1-208ENST00000573600 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP43.81■■■■■ 4.62e-14■■■■□ 24.3
CTDNEP1-208ENST00000573600 ILF3Q12906 894 aaKnown RBP eCLIP27.98■■■□□ 2.073e-14■■■■□ 20.1
CTDNEP1-208ENST00000573600 DDX55Q8NHQ9 600 aaKnown RBP eCLIP32.82■■■□□ 2.853e-14■■□□□ 12.2
CTDNEP1-208ENST00000573600 PTBP1P26599 531 aaKnown RBP eCLIP25.7■■□□□ 1.75e-14■□□□□ 9.8
CTDNEP1-208ENST00000573600 DDX3XO00571 662 aaKnown RBP eCLIP31.4■■■□□ 2.622e-11■■■■□ 21
CTDNEP1-208ENST00000573600 PABPC4Q13310 644 aaKnown RBP eCLIP32.43■■■□□ 2.786e-11■□□□□ 10.8
CTDNEP1-208ENST00000573600 PCBP1Q15365 356 aaKnown RBP eCLIP31.35■■■□□ 2.616e-11■■■■■ 51.3
CTDNEP1-208ENST00000573600 PUM2Q8TB72 1066 aaKnown RBP eCLIP27.89■■■□□ 2.066e-11■■■■■ 32.3
CTDNEP1-208ENST00000573600 DHX30Q7L2E3 1194 aaKnown RBP eCLIP32.31■■■□□ 2.761e-10■■■□□ 14.6
CTDNEP1-208ENST00000573600 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP30.63■■■□□ 2.493e-10■■■■■ 88.3
CTDNEP1-208ENST00000573600 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP42.89■■■■■ 4.463e-9■■□□□ 12.3
CTDNEP1-208ENST00000573600 RPS3P23396 243 aaKnown RBP eCLIP28.94■■■□□ 2.225e-9■■■■■ 27.8
CTDNEP1-208ENST00000573600 SF3B1O75533 1304 aaKnown RBP eCLIP30.33■■■□□ 2.451e-8■■■■■ 60.3
CTDNEP1-208ENST00000573600 PCBP2Q15366 365 aaKnown RBP eCLIP28.64■■■□□ 2.182e-8■■■■■ 114
CTDNEP1-208ENST00000573600 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP22.99■■□□□ 1.275e-8■□□□□ 9.7
CTDNEP1-208ENST00000573600 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP29.34■■■□□ 2.299e-8■■□□□ 13.7
CTDNEP1-208ENST00000573600 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP32.57■■■□□ 2.811e-7■□□□□ 8.6
CTDNEP1-208ENST00000573600 LARP4Q71RC2 724 aaKnown RBP eCLIP28.53■■■□□ 2.162e-7■□□□□ 8.8
CTDNEP1-208ENST00000573600 TIA1P31483 386 aaKnown RBP eCLIP27.99■■■□□ 2.072e-7■■■■□ 21.6
CTDNEP1-208ENST00000573600 DDX59Q5T1V6 619 aaKnown RBP eCLIP27.62■■■□□ 2.013e-7■■■■■ 62.4
CTDNEP1-208ENST00000573600 EFTUD2Q15029 972 aaKnown RBP eCLIP29.71■■■□□ 2.354e-7■■■■■ 34.6
CTDNEP1-208ENST00000573600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP41.65■■■■■ 4.269e-7■■□□□ 12.2
CTDNEP1-208ENST00000573600 YBX3P16989 372 aaKnown RBP eCLIP32.99■■■□□ 2.871e-6■■□□□ 13.3
CTDNEP1-208ENST00000573600 PPIGQ13427 754 aaKnown RBP eCLIP30■■■□□ 2.392e-6■■■□□ 18
CTDNEP1-208ENST00000573600 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.93■■■□□ 2.542e-6■■■□□ 15.1
CTDNEP1-208ENST00000573600 EIF3GO75821 320 aaKnown RBP eCLIP23.07■■□□□ 1.282e-6■■□□□ 12.1
CTDNEP1-208ENST00000573600 AQRO60306 1485 aaKnown RBP eCLIP45.58■■■■■ 4.892e-6■■■■■ 28.6
CTDNEP1-208ENST00000573600 RBM22Q9NW64 420 aaKnown RBP eCLIP29.72■■■□□ 2.352e-6■□□□□ 11.1
CTDNEP1-208ENST00000573600 DDX24Q9GZR7 859 aaKnown RBP eCLIP34.94■■■■□ 3.184e-6■□□□□ 11.1
CTDNEP1-208ENST00000573600 METAP2P50579 478 aaKnown RBP eCLIP34.11■■■■□ 3.054e-6■□□□□ 8.6
CTDNEP1-208ENST00000573600 SF3B4Q15427 424 aaKnown RBP eCLIP25.4■■□□□ 1.669e-6■■■■■ 27.7
Retrieved 36 of 36 RNA–protein pairs in 7.4 ms