RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 S4R3F8 94 aa6.77□□□□□ -1.33
CCDC40-209ENST00000573474 LCA10Q71F78 164 aa6.73□□□□□ -1.33
CCDC40-209ENST00000573474 LCE2CQ5TA81 110 aa6.72□□□□□ -1.33
CCDC40-209ENST00000573474 SPTSSBQ8NFR3 76 aa6.72□□□□□ -1.33
CCDC40-209ENST00000573474 FLGP20930 4061 aaPredicted RBP6.7□□□□□ -1.34
CCDC40-209ENST00000573474 KRTAP3-3Q9BYR6 98 aa6.69□□□□□ -1.34
CCDC40-209ENST00000573474 CSAG1Q6PB30 78 aa6.65□□□□□ -1.34
CCDC40-209ENST00000573474 SMIM26A0A096LP01 95 aa6.64□□□□□ -1.35
CCDC40-209ENST00000573474 FAT4Q6V0I7 4981 aa6.62□□□□□ -1.35
CCDC40-209ENST00000573474 MT1HP80294 61 aa6.6□□□□□ -1.35
CCDC40-209ENST00000573474 M0R2T5 61 aa6.55□□□□□ -1.36
CCDC40-209ENST00000573474 V9GYY9 64 aa6.55□□□□□ -1.36
CCDC40-209ENST00000573474 Q1T7F1 81 aa6.54□□□□□ -1.36
CCDC40-209ENST00000573474 LINC01558Q9Y6Z2 57 aa6.54□□□□□ -1.36
CCDC40-209ENST00000573474 SEC61GP60059 68 aa6.5□□□□□ -1.37
CCDC40-209ENST00000573474 H0YAA0 97 aa6.49□□□□□ -1.37
CCDC40-209ENST00000573474 A0A1B0GU69 56 aa6.47□□□□□ -1.37
CCDC40-209ENST00000573474 PRR15LQ9BU68 103 aa6.46□□□□□ -1.38
CCDC40-209ENST00000573474 ADM2Q7Z4H4 148 aa6.45□□□□□ -1.38
CCDC40-209ENST00000573474 LCE2AQ5TA79 106 aaPredicted RBP6.43□□□□□ -1.38
CCDC40-209ENST00000573474 KRTAP3-2Q9BYR7 98 aa6.43□□□□□ -1.38
CCDC40-209ENST00000573474 PSPHP1O15172 72 aa6.41□□□□□ -1.38
CCDC40-209ENST00000573474 KRTAP10-6P60371 365 aaPredicted RBP6.4□□□□□ -1.38
CCDC40-209ENST00000573474 P0C880 135 aa6.38□□□□□ -1.39
CCDC40-209ENST00000573474 Q5VV11 94 aa6.35□□□□□ -1.39
CCDC40-209ENST00000573474 LORP23490 312 aaPredicted RBP6.34□□□□□ -1.39
CCDC40-209ENST00000573474 KRTAP9-8Q9BYQ0 159 aa6.34□□□□□ -1.39
CCDC40-209ENST00000573474 A0A1B0GU33 70 aa6.32□□□□□ -1.4
CCDC40-209ENST00000573474 MT2AP02795 61 aa6.31□□□□□ -1.4
CCDC40-209ENST00000573474 KRTAP10-10P60014 251 aa6.28□□□□□ -1.4
CCDC40-209ENST00000573474 MT1FP04733 61 aa6.27□□□□□ -1.41
CCDC40-209ENST00000573474 CRIPTQ9P021 101 aa6.27□□□□□ -1.41
CCDC40-209ENST00000573474 UQCR11O14957 56 aa6.26□□□□□ -1.41
CCDC40-209ENST00000573474 M0QZ58 72 aa6.25□□□□□ -1.41
CCDC40-209ENST00000573474 A6NED7 52 aa6.23□□□□□ -1.41
CCDC40-209ENST00000573474 R4GN34 69 aa6.23□□□□□ -1.41
CCDC40-209ENST00000573474 KRTAP13-4Q3LI77 160 aa6.2□□□□□ -1.42
CCDC40-209ENST00000573474 SPATA8Q6RVD6 105 aa6.2□□□□□ -1.42
CCDC40-209ENST00000573474 MIR22HGQ0VDD5 57 aa6.18□□□□□ -1.42
CCDC40-209ENST00000573474 SPRR2GQ9BYE4 73 aa6.13□□□□□ -1.43
CCDC40-209ENST00000573474 KRTAP9-3Q9BYQ3 159 aa6.13□□□□□ -1.43
CCDC40-209ENST00000573474 KRTAP19-1Q8IUB9 90 aa6.11□□□□□ -1.43
CCDC40-209ENST00000573474 LINC01554Q52M75 96 aa6.1□□□□□ -1.43
CCDC40-209ENST00000573474 CDC42SE1Q9NRR8 79 aa6.1□□□□□ -1.43
CCDC40-209ENST00000573474 A0A0D9SG42 100 aa6.09□□□□□ -1.43
CCDC40-209ENST00000573474 A8MU10 97 aa6.09□□□□□ -1.43
CCDC40-209ENST00000573474 BRK1Q8WUW1 75 aa6.05□□□□□ -1.44
CCDC40-209ENST00000573474 A6NN06 94 aa6.02□□□□□ -1.45
CCDC40-209ENST00000573474 KRTAP19-8Q3LI54 63 aa6□□□□□ -1.45
CCDC40-209ENST00000573474 KRTAP12-1P59990 96 aa5.97□□□□□ -1.45
CCDC40-209ENST00000573474 SPINT4Q6UDR6 99 aa5.97□□□□□ -1.45
CCDC40-209ENST00000573474 K7ERS5 55 aa5.95□□□□□ -1.46
CCDC40-209ENST00000573474 LCE2BO14633 110 aa5.95□□□□□ -1.46
CCDC40-209ENST00000573474 KRTAP12-2P59991 146 aa5.94□□□□□ -1.46
CCDC40-209ENST00000573474 PLAC4Q8WY50 150 aa5.93□□□□□ -1.46
CCDC40-209ENST00000573474 LCE2DQ5TA82 110 aaPredicted RBP5.92□□□□□ -1.46
CCDC40-209ENST00000573474 MT1BP07438 61 aa5.91□□□□□ -1.46
CCDC40-209ENST00000573474 PRO0628Q9UI54 55 aa5.86□□□□□ -1.47
CCDC40-209ENST00000573474 KRTAP9-2Q9BYQ4 174 aa5.84□□□□□ -1.47
CCDC40-209ENST00000573474 CAMK2N1Q7Z7J9 78 aa5.83□□□□□ -1.48
CCDC40-209ENST00000573474 USH2AO75445 5202 aa5.81□□□□□ -1.48
CCDC40-209ENST00000573474 PMAIP1Q13794 54 aa5.73□□□□□ -1.49
CCDC40-209ENST00000573474 MT1XP80297 61 aa5.69□□□□□ -1.5
CCDC40-209ENST00000573474 KRTAP10-5P60370 271 aa5.68□□□□□ -1.5
CCDC40-209ENST00000573474 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
CCDC40-209ENST00000573474 ROMO1P60602 79 aa5.66□□□□□ -1.5
CCDC40-209ENST00000573474 C10orf95Q9H7T3 257 aa5.66□□□□□ -1.5
CCDC40-209ENST00000573474 KRTAP19-6Q3LI70 58 aa5.64□□□□□ -1.51
CCDC40-209ENST00000573474 SSPOA2VEC9 5147 aa5.62□□□□□ -1.51
CCDC40-209ENST00000573474 FSIP2Q5CZC0 6907 aa5.58□□□□□ -1.52
CCDC40-209ENST00000573474 KRTAP9-6A0A140TA67 174 aa5.58□□□□□ -1.52
CCDC40-209ENST00000573474 TNP1P09430 55 aa5.53□□□□□ -1.52
CCDC40-209ENST00000573474 KRTAP25-1Q3LHN0 102 aa5.52□□□□□ -1.53
CCDC40-209ENST00000573474 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
CCDC40-209ENST00000573474 KRTAP10-7P60409 375 aaPredicted RBP5.44□□□□□ -1.54
CCDC40-209ENST00000573474 KTN1-AS1Q86SY8 53 aa5.44□□□□□ -1.54
CCDC40-209ENST00000573474 FCGBPQ9Y6R7 5405 aaPredicted RBP5.42□□□□□ -1.54
CCDC40-209ENST00000573474 KRTAP10-12P60413 245 aa5.41□□□□□ -1.54
CCDC40-209ENST00000573474 PRAC1Q96KF2 57 aa5.36□□□□□ -1.55
CCDC40-209ENST00000573474 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
CCDC40-209ENST00000573474 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
CCDC40-209ENST00000573474 LCE3AQ5TA76 89 aa5.29□□□□□ -1.56
CCDC40-209ENST00000573474 SVIPQ8NHG7 77 aa5.27□□□□□ -1.57
CCDC40-209ENST00000573474 KRTAP4-8A0A0G2JLE6 195 aa5.25□□□□□ -1.57
CCDC40-209ENST00000573474 KRTAP4-8Q9BYQ9 185 aa5.25□□□□□ -1.57
CCDC40-209ENST00000573474 KRTAP8-1Q8IUC2 63 aa5.19□□□□□ -1.58
CCDC40-209ENST00000573474 MACF1Q9UPN3 7388 aaKnown RBP5.19□□□□□ -1.58
CCDC40-209ENST00000573474 KMT2DO14686 5537 aa5.19□□□□□ -1.58
CCDC40-209ENST00000573474 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.15□□□□□ -1.59
CCDC40-209ENST00000573474 KRTAP19-5Q3LI72 72 aa5.12□□□□□ -1.59
CCDC40-209ENST00000573474 KRTAP12-3P60328 96 aa5.1□□□□□ -1.59
CCDC40-209ENST00000573474 KRTAP19-7Q3SYF9 63 aa5.07□□□□□ -1.6
CCDC40-209ENST00000573474 KRTAP9-7A8MTY7 169 aa5.04□□□□□ -1.6
CCDC40-209ENST00000573474 SYNE2Q8WXH0 6885 aaKnown RBP5.03□□□□□ -1.6
CCDC40-209ENST00000573474 MT1EP04732 61 aa5□□□□□ -1.61
CCDC40-209ENST00000573474 SPRR2FQ96RM1 72 aa4.99□□□□□ -1.61
CCDC40-209ENST00000573474 KRTAP5-9P26371 169 aa4.98□□□□□ -1.61
CCDC40-209ENST00000573474 KRTAP15-1Q3LI76 137 aa4.98□□□□□ -1.61
CCDC40-209ENST00000573474 KRTAP6-3Q3LI67 103 aa4.97□□□□□ -1.61
CCDC40-209ENST00000573474 MT1LQ93083 61 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms