RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 DNAH3Q8TD57 4116 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 ZNF292O60281 2723 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 CENPEQ02224 2701 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 DOPEY1Q5JWR5 2465 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 CUBNO60494 3623 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 CMYA5Q8N3K9 4069 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 MTORP42345 2549 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 PKD1L2Q7Z442 2459 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 CEP295Q9C0D2 2601 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 DNAH9Q9NYC9 4486 aa1.66□□□□□ -2.14
VPS39-212ENST00000570023 NBEAL2Q6ZNJ1 2754 aa1.65□□□□□ -2.14
VPS39-212ENST00000570023 DNAH7Q8WXX0 4024 aa1.65□□□□□ -2.15
VPS39-212ENST00000570023 ZNF469Q96JG9 3925 aaPredicted RBP1.65□□□□□ -2.15
VPS39-212ENST00000570023 DNAH8Q96JB1 4490 aa1.65□□□□□ -2.15
VPS39-212ENST00000570023 ACANP16112 2415 aa1.65□□□□□ -2.15
VPS39-212ENST00000570023 PRKDCP78527 4128 aaKnown RBP1.64□□□□□ -2.15
VPS39-212ENST00000570023 FBN2P35556 2912 aa1.64□□□□□ -2.15
VPS39-212ENST00000570023 PDZD2O15018 2839 aa1.64□□□□□ -2.15
VPS39-212ENST00000570023 ZANQ9Y493 2812 aa1.64□□□□□ -2.15
VPS39-212ENST00000570023 DYNC2H1Q8NCM8 4307 aaKnown RBP1.64□□□□□ -2.15
VPS39-212ENST00000570023 UNC79Q9P2D8 2635 aa1.64□□□□□ -2.15
VPS39-212ENST00000570023 HECTD1Q9ULT8 2610 aa1.64□□□□□ -2.15
VPS39-212ENST00000570023 PIEZO1Q92508 2521 aa1.64□□□□□ -2.15
VPS39-212ENST00000570023 COL7A1Q02388 2944 aa1.63□□□□□ -2.15
VPS39-212ENST00000570023 GCN1Q92616 2671 aaKnown RBP1.63□□□□□ -2.15
VPS39-212ENST00000570023 LYSTQ99698 3801 aa1.63□□□□□ -2.15
VPS39-212ENST00000570023 BDP1A6H8Y1 2624 aa1.63□□□□□ -2.15
VPS39-212ENST00000570023 DNAH17Q9UFH2 4485 aa1.63□□□□□ -2.15
VPS39-212ENST00000570023 HELZ2Q9BYK8 2649 aaKnown RBP1.62□□□□□ -2.15
VPS39-212ENST00000570023 LRRK2Q5S007 2527 aa1.62□□□□□ -2.15
VPS39-212ENST00000570023 DNAH11Q96DT5 4516 aa1.62□□□□□ -2.15
VPS39-212ENST00000570023 DNAH6Q9C0G6 4158 aa1.61□□□□□ -2.15
VPS39-212ENST00000570023 KRTAP8-1Q8IUC2 63 aa1.61□□□□□ -2.15
VPS39-212ENST00000570023 SETD2Q9BYW2 2564 aaPredicted RBP1.61□□□□□ -2.15
VPS39-212ENST00000570023 CHD8Q9HCK8 2581 aa1.61□□□□□ -2.15
VPS39-212ENST00000570023 ITPR3Q14573 2671 aa1.61□□□□□ -2.15
VPS39-212ENST00000570023 HIVEP1P15822 2718 aa1.6□□□□□ -2.15
VPS39-212ENST00000570023 CFAP46Q8IYW2 2715 aa1.6□□□□□ -2.15
VPS39-212ENST00000570023 CSMD3Q7Z407 3707 aa1.59□□□□□ -2.15
VPS39-212ENST00000570023 HUWE1Q7Z6Z7 4374 aaKnown RBP1.59□□□□□ -2.15
VPS39-212ENST00000570023 STAB2Q8WWQ8 2551 aa1.59□□□□□ -2.15
VPS39-212ENST00000570023 TTC28Q96AY4 2481 aa1.59□□□□□ -2.16
VPS39-212ENST00000570023 CACNA1AO00555 2505 aa1.59□□□□□ -2.16
VPS39-212ENST00000570023 HECTD4Q9Y4D8 3996 aa1.58□□□□□ -2.16
VPS39-212ENST00000570023 PKD1L1Q8TDX9 2849 aa1.56□□□□□ -2.16
VPS39-212ENST00000570023 SACSQ9NZJ4 4579 aa1.56□□□□□ -2.16
VPS39-212ENST00000570023 KRTAP2-3P0C7H8 128 aa1.56□□□□□ -2.16
VPS39-212ENST00000570023 KRTAP2-4Q9BYR9 128 aa1.56□□□□□ -2.16
VPS39-212ENST00000570023 KRTAP2-1Q9BYU5 128 aa1.56□□□□□ -2.16
VPS39-212ENST00000570023 EPG5Q9HCE0 2579 aa1.55□□□□□ -2.16
VPS39-212ENST00000570023 KRTAP5-7Q6L8G8 165 aa1.55□□□□□ -2.16
VPS39-212ENST00000570023 USP9YO00507 2555 aaPredicted RBP1.55□□□□□ -2.16
VPS39-212ENST00000570023 NBEAL1Q6ZS30 2694 aa1.55□□□□□ -2.16
VPS39-212ENST00000570023 FBN3Q75N90 2809 aa1.55□□□□□ -2.16
VPS39-212ENST00000570023 PLECQ15149 4684 aaKnown RBP1.55□□□□□ -2.16
VPS39-212ENST00000570023 DNAH2Q9P225 4427 aa1.54□□□□□ -2.16
VPS39-212ENST00000570023 FASNP49327 2511 aaKnown RBP1.53□□□□□ -2.16
VPS39-212ENST00000570023 TENM3Q9P273 2699 aa1.53□□□□□ -2.16
VPS39-212ENST00000570023 DNAH5Q8TE73 4624 aa1.52□□□□□ -2.17
VPS39-212ENST00000570023 FLNCQ14315 2725 aa1.52□□□□□ -2.17
VPS39-212ENST00000570023 ABCA12Q86UK0 2595 aa1.52□□□□□ -2.17
VPS39-212ENST00000570023 M0R2T5 61 aa1.52□□□□□ -2.17
VPS39-212ENST00000570023 POLQO75417 2590 aa1.51□□□□□ -2.17
VPS39-212ENST00000570023 FLNAP21333 2647 aaKnown RBP1.51□□□□□ -2.17
VPS39-212ENST00000570023 USP24Q9UPU5 2620 aa1.51□□□□□ -2.17
VPS39-212ENST00000570023 KRTAP12-3P60328 96 aa1.5□□□□□ -2.17
VPS39-212ENST00000570023 KMT2AQ03164 3969 aa1.5□□□□□ -2.17
VPS39-212ENST00000570023 ITPR2Q14571 2701 aa1.5□□□□□ -2.17
VPS39-212ENST00000570023 STARD9Q9P2P6 4700 aa1.49□□□□□ -2.17
VPS39-212ENST00000570023 MYO18BQ8IUG5 2567 aa1.49□□□□□ -2.17
VPS39-212ENST00000570023 KRTAP5-8O75690 187 aa1.49□□□□□ -2.17
VPS39-212ENST00000570023 KRTAP10-4P60372 401 aaPredicted RBP1.49□□□□□ -2.17
VPS39-212ENST00000570023 PKHD1L1Q86WI1 4243 aa1.49□□□□□ -2.17
VPS39-212ENST00000570023 IGSF10Q6WRI0 2623 aa1.49□□□□□ -2.17
VPS39-212ENST00000570023 TENM1Q9UKZ4 2725 aa1.48□□□□□ -2.17
VPS39-212ENST00000570023 APOBP04114 4563 aaKnown RBP1.47□□□□□ -2.17
VPS39-212ENST00000570023 KRTAP6-3Q3LI67 103 aa1.47□□□□□ -2.17
VPS39-212ENST00000570023 ACACBO00763 2458 aa1.46□□□□□ -2.18
VPS39-212ENST00000570023 ATRQ13535 2644 aa1.46□□□□□ -2.18
VPS39-212ENST00000570023 SMR3BP02814 79 aaPredicted RBP1.46□□□□□ -2.18
VPS39-212ENST00000570023 NOTCH1P46531 2555 aa1.46□□□□□ -2.18
VPS39-212ENST00000570023 VPS13BQ7Z7G8 4022 aa1.45□□□□□ -2.18
VPS39-212ENST00000570023 PKHD1P08F94 4074 aa1.45□□□□□ -2.18
VPS39-212ENST00000570023 TEP1Q99973 2627 aaKnown RBP1.45□□□□□ -2.18
VPS39-212ENST00000570023 TNXBP22105 4242 aa1.45□□□□□ -2.18
VPS39-212ENST00000570023 MUC19Q7Z5P9 8384 aa1.44□□□□□ -2.18
VPS39-212ENST00000570023 PKD1P98161 4303 aa1.44□□□□□ -2.18
VPS39-212ENST00000570023 KRTAP12-4P60329 112 aa1.44□□□□□ -2.18
VPS39-212ENST00000570023 LRP1BQ9NZR2 4599 aa1.43□□□□□ -2.18
VPS39-212ENST00000570023 HSPG2P98160 4391 aa1.43□□□□□ -2.18
VPS39-212ENST00000570023 LRP1Q07954 4544 aaKnown RBP1.42□□□□□ -2.18
VPS39-212ENST00000570023 MAST4O15021 2626 aa1.42□□□□□ -2.18
VPS39-212ENST00000570023 FAT2Q9NYQ8 4349 aa1.42□□□□□ -2.18
VPS39-212ENST00000570023 DYNC1H1Q14204 4646 aaKnown RBP1.41□□□□□ -2.18
VPS39-212ENST00000570023 NSD1Q96L73 2696 aaPredicted RBP1.41□□□□□ -2.18
VPS39-212ENST00000570023 SPRR2GQ9BYE4 73 aa1.41□□□□□ -2.18
VPS39-212ENST00000570023 FLNBO75369 2602 aaKnown RBP1.4□□□□□ -2.18
VPS39-212ENST00000570023 FAT1Q14517 4588 aa1.4□□□□□ -2.19
VPS39-212ENST00000570023 FAT3Q8TDW7 4589 aa1.39□□□□□ -2.19
VPS39-212ENST00000570023 MGAM2Q2M2H8 2515 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms