RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 UBL5Q9BZL1 73 aa7.43□□□□□ -1.22
CLK3-221ENST00000568139 BATFQ16520 125 aa7.42□□□□□ -1.22
CLK3-221ENST00000568139 LCE1AQ5T7P2 110 aa7.42□□□□□ -1.22
CLK3-221ENST00000568139 PRO2289Q9P1D8 64 aa7.42□□□□□ -1.22
CLK3-221ENST00000568139 MT1XP80297 61 aa7.4□□□□□ -1.22
CLK3-221ENST00000568139 KRTAP8-1Q8IUC2 63 aa7.4□□□□□ -1.22
CLK3-221ENST00000568139 CYP4F30PQ9H0H9 118 aa7.4□□□□□ -1.22
CLK3-221ENST00000568139 H0YAA0 97 aa7.39□□□□□ -1.23
CLK3-221ENST00000568139 TAX1BP3O14907 124 aa7.38□□□□□ -1.23
CLK3-221ENST00000568139 A8MUN3 132 aa7.32□□□□□ -1.24
CLK3-221ENST00000568139 KRTAP12-2P59991 146 aa7.31□□□□□ -1.24
CLK3-221ENST00000568139 NDUFC1O43677 76 aa7.3□□□□□ -1.24
CLK3-221ENST00000568139 SPRR2DP22532 72 aa7.3□□□□□ -1.24
CLK3-221ENST00000568139 SMIM6P0DI80 62 aa7.29□□□□□ -1.24
CLK3-221ENST00000568139 SPCS1Q9Y6A9 102 aa7.28□□□□□ -1.24
CLK3-221ENST00000568139 ADM2Q7Z4H4 148 aa7.27□□□□□ -1.25
CLK3-221ENST00000568139 PLAC4Q8WY50 150 aa7.27□□□□□ -1.25
CLK3-221ENST00000568139 LOC101927531A0A1B0GV80 90 aa7.26□□□□□ -1.25
CLK3-221ENST00000568139 TRAV22A0A0B4J277 110 aa7.24□□□□□ -1.25
CLK3-221ENST00000568139 K7EP34 96 aa7.23□□□□□ -1.25
CLK3-221ENST00000568139 KRTAP4-8A0A0G2JLE6 195 aa7.22□□□□□ -1.25
CLK3-221ENST00000568139 KRTAP4-8Q9BYQ9 185 aa7.22□□□□□ -1.25
CLK3-221ENST00000568139 PRO0461Q9UI25 63 aa7.22□□□□□ -1.25
CLK3-221ENST00000568139 LCE3BQ5TA77 95 aa7.15□□□□□ -1.26
CLK3-221ENST00000568139 ACYP1P07311 99 aa7.13□□□□□ -1.27
CLK3-221ENST00000568139 R4GN34 69 aa7.11□□□□□ -1.27
CLK3-221ENST00000568139 LOC100996750A0A140TA64 210 aa7.09□□□□□ -1.27
CLK3-221ENST00000568139 KRTAP4-6Q9BYQ5 205 aa7.09□□□□□ -1.27
CLK3-221ENST00000568139 H0Y9P7 68 aa7.06□□□□□ -1.28
CLK3-221ENST00000568139 ATOX1O00244 68 aa7.06□□□□□ -1.28
CLK3-221ENST00000568139 UQCRQO14949 82 aa7.06□□□□□ -1.28
CLK3-221ENST00000568139 P0C880 135 aa7.06□□□□□ -1.28
CLK3-221ENST00000568139 KRTAP10-7P60409 375 aaPredicted RBP7.05□□□□□ -1.28
CLK3-221ENST00000568139 LOC105371267A0A1B0GV96 52 aa7.04□□□□□ -1.28
CLK3-221ENST00000568139 M0QZ58 72 aa7.03□□□□□ -1.28
CLK3-221ENST00000568139 KRTAP10-12P60413 245 aa7.03□□□□□ -1.28
CLK3-221ENST00000568139 C20orf197Q8N268 126 aa7.02□□□□□ -1.29
CLK3-221ENST00000568139 COL5A1-AS1Q5SY13 56 aa6.98□□□□□ -1.29
CLK3-221ENST00000568139 ETDBQ3ZM63 59 aa6.97□□□□□ -1.29
CLK3-221ENST00000568139 F8W1H4 67 aa6.94□□□□□ -1.3
CLK3-221ENST00000568139 LINC01554Q52M75 96 aa6.94□□□□□ -1.3
CLK3-221ENST00000568139 LINC00208Q96KT6 92 aa6.91□□□□□ -1.3
CLK3-221ENST00000568139 HIST1H4AP62805 103 aaKnown RBP6.9□□□□□ -1.3
CLK3-221ENST00000568139 GTF2H5Q6ZYL4 71 aa6.9□□□□□ -1.3
CLK3-221ENST00000568139 ATP5EP2Q5VTU8 51 aa6.89□□□□□ -1.31
CLK3-221ENST00000568139 GPR98Q8WXG9 6306 aa6.82□□□□□ -1.32
CLK3-221ENST00000568139 MP68P56378 58 aa6.79□□□□□ -1.32
CLK3-221ENST00000568139 FAM240AA0A1B0GVK7 77 aa6.78□□□□□ -1.32
CLK3-221ENST00000568139 DMAC1Q96GE9 116 aa6.78□□□□□ -1.32
CLK3-221ENST00000568139 DSTQ03001 7570 aaKnown RBP6.77□□□□□ -1.32
CLK3-221ENST00000568139 OCR1Q9BZK8 76 aa6.76□□□□□ -1.33
CLK3-221ENST00000568139 KRTAP4-9Q9BYQ8 210 aa6.75□□□□□ -1.33
CLK3-221ENST00000568139 MT-ATP8P03928 68 aa6.71□□□□□ -1.34
CLK3-221ENST00000568139 LCE5AQ5TCM9 118 aa6.71□□□□□ -1.34
CLK3-221ENST00000568139 PCP4L1A6NKN8 68 aa6.69□□□□□ -1.34
CLK3-221ENST00000568139 H3BPC8 53 aa6.67□□□□□ -1.34
CLK3-221ENST00000568139 LINC00643Q86TS7 51 aa6.66□□□□□ -1.34
CLK3-221ENST00000568139 KRTAP19-7Q3SYF9 63 aa6.63□□□□□ -1.35
CLK3-221ENST00000568139 TRAV7A0A075B6U4 112 aa6.62□□□□□ -1.35
CLK3-221ENST00000568139 KRTAP19-3Q7Z4W3 81 aa6.62□□□□□ -1.35
CLK3-221ENST00000568139 MT1EP04732 61 aa6.58□□□□□ -1.36
CLK3-221ENST00000568139 LCE1DQ5T752 114 aa6.56□□□□□ -1.36
CLK3-221ENST00000568139 ACYP2P14621 99 aa6.53□□□□□ -1.36
CLK3-221ENST00000568139 SPTSSBQ8NFR3 76 aa6.52□□□□□ -1.37
CLK3-221ENST00000568139 CYSTM1Q9H1C7 97 aa6.48□□□□□ -1.37
CLK3-221ENST00000568139 CAMK2N1Q7Z7J9 78 aa6.46□□□□□ -1.38
CLK3-221ENST00000568139 LCE4AQ5TA78 99 aa6.45□□□□□ -1.38
CLK3-221ENST00000568139 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
CLK3-221ENST00000568139 MT1GP13640 62 aa6.42□□□□□ -1.38
CLK3-221ENST00000568139 SCGB1A1P11684 91 aa6.41□□□□□ -1.38
CLK3-221ENST00000568139 MT4P47944 62 aa6.41□□□□□ -1.38
CLK3-221ENST00000568139 HMCN1Q96RW7 5635 aa6.37□□□□□ -1.39
CLK3-221ENST00000568139 A0A1B0GV90 55 aa6.36□□□□□ -1.39
CLK3-221ENST00000568139 CHKB-CPT1BH3BT56 60 aa6.36□□□□□ -1.39
CLK3-221ENST00000568139 PP632Q6XCG6 107 aa6.35□□□□□ -1.39
CLK3-221ENST00000568139 KRTAP19-5Q3LI72 72 aa6.34□□□□□ -1.39
CLK3-221ENST00000568139 KRTAP5-10Q6L8G5 202 aa6.32□□□□□ -1.4
CLK3-221ENST00000568139 A0A0D9SG42 100 aa6.31□□□□□ -1.4
CLK3-221ENST00000568139 MT1MQ8N339 61 aa6.3□□□□□ -1.4
CLK3-221ENST00000568139 AHNAK2Q8IVF2 5795 aa6.27□□□□□ -1.4
CLK3-221ENST00000568139 KRTAP5-4Q6L8H1 288 aa6.27□□□□□ -1.41
CLK3-221ENST00000568139 MT1LQ93083 61 aa6.23□□□□□ -1.41
CLK3-221ENST00000568139 KRTAP4-3Q9BYR4 195 aa6.16□□□□□ -1.42
CLK3-221ENST00000568139 J3QR89 54 aa6.14□□□□□ -1.43
CLK3-221ENST00000568139 KRTAP5-7Q6L8G8 165 aa6.14□□□□□ -1.43
CLK3-221ENST00000568139 SMIM20Q8N5G0 67 aa6.14□□□□□ -1.43
CLK3-221ENST00000568139 K7ERU9 68 aa6.11□□□□□ -1.43
CLK3-221ENST00000568139 SPANXA2-OT1Q8N9U9 137 aa6.1□□□□□ -1.43
CLK3-221ENST00000568139 PCP4P48539 62 aa6.09□□□□□ -1.43
CLK3-221ENST00000568139 SPINT4Q6UDR6 99 aa6.09□□□□□ -1.43
CLK3-221ENST00000568139 SNURFQ9Y675 71 aa6.08□□□□□ -1.44
CLK3-221ENST00000568139 KRTAP5-3Q6L8H2 238 aa6.07□□□□□ -1.44
CLK3-221ENST00000568139 SPATA8Q6RVD6 105 aa6.06□□□□□ -1.44
CLK3-221ENST00000568139 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
CLK3-221ENST00000568139 KRTAP4-12Q9BQ66 201 aa6.04□□□□□ -1.44
CLK3-221ENST00000568139 C10orf95Q9H7T3 257 aa6.01□□□□□ -1.45
CLK3-221ENST00000568139 SERP1Q9Y6X1 66 aa6□□□□□ -1.45
CLK3-221ENST00000568139 SEC61GP60059 68 aa5.99□□□□□ -1.45
CLK3-221ENST00000568139 LCE3AQ5TA76 89 aa5.98□□□□□ -1.45
CLK3-221ENST00000568139 KRTAP9-9Q9BYP9 154 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms