RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SPATA8Q6RVD6 105 aa10.45□□□□□ -0.74
CLN3-230ENST00000568076 ABCA13Q86UQ4 5058 aa10.42□□□□□ -0.74
CLN3-230ENST00000568076 A6NN06 94 aa10.4□□□□□ -0.74
CLN3-230ENST00000568076 MIR22HGQ0VDD5 57 aa10.4□□□□□ -0.74
CLN3-230ENST00000568076 TPRXLQ17RH7 258 aa10.4□□□□□ -0.74
CLN3-230ENST00000568076 LRP2P98164 4655 aa10.37□□□□□ -0.75
CLN3-230ENST00000568076 LPAP08519 4548 aa10.34□□□□□ -0.75
CLN3-230ENST00000568076 KRTAP3-3Q9BYR6 98 aa10.32□□□□□ -0.76
CLN3-230ENST00000568076 A0A1B0GU33 70 aa10.22□□□□□ -0.77
CLN3-230ENST00000568076 H0YAA0 97 aa10.22□□□□□ -0.77
CLN3-230ENST00000568076 S4R3F8 94 aa10.21□□□□□ -0.77
CLN3-230ENST00000568076 H1FX-AS1Q4G0G2 97 aa10.21□□□□□ -0.78
CLN3-230ENST00000568076 KTN1-AS1Q86SY8 53 aa10.2□□□□□ -0.78
CLN3-230ENST00000568076 HERC2O95714 4834 aa10.18□□□□□ -0.78
CLN3-230ENST00000568076 KRTAP10-6P60371 365 aaPredicted RBP10.11□□□□□ -0.79
CLN3-230ENST00000568076 BIRC6Q9NR09 4857 aa10.1□□□□□ -0.79
CLN3-230ENST00000568076 J3QL48 77 aa10.1□□□□□ -0.79
CLN3-230ENST00000568076 KRTAP3-2Q9BYR7 98 aa10.08□□□□□ -0.8
CLN3-230ENST00000568076 RBM12B-AS1Q9P1G2 102 aa10.06□□□□□ -0.8
CLN3-230ENST00000568076 SEC61BP60468 96 aaKnown RBP9.98□□□□□ -0.81
CLN3-230ENST00000568076 MUC17Q685J3 4493 aa9.97□□□□□ -0.81
CLN3-230ENST00000568076 P0C880 135 aa9.95□□□□□ -0.82
CLN3-230ENST00000568076 KRTAP13-4Q3LI77 160 aa9.95□□□□□ -0.82
CLN3-230ENST00000568076 KRTAP4-1Q9BYQ7 146 aa9.94□□□□□ -0.82
CLN3-230ENST00000568076 ADM2Q7Z4H4 148 aa9.93□□□□□ -0.82
CLN3-230ENST00000568076 CSAG1Q6PB30 78 aa9.89□□□□□ -0.83
CLN3-230ENST00000568076 PRAC1Q96KF2 57 aa9.88□□□□□ -0.83
CLN3-230ENST00000568076 A0A0D9SG42 100 aa9.78□□□□□ -0.84
CLN3-230ENST00000568076 PCLOQ9Y6V0 5065 aa9.77□□□□□ -0.85
CLN3-230ENST00000568076 KRTAP19-2Q3LHN2 52 aa9.74□□□□□ -0.85
CLN3-230ENST00000568076 K7ERS5 55 aa9.73□□□□□ -0.85
CLN3-230ENST00000568076 HERC1Q15751 4861 aa9.69□□□□□ -0.86
CLN3-230ENST00000568076 MUC2Q02817 5179 aa9.65□□□□□ -0.87
CLN3-230ENST00000568076 HMCN2Q8NDA2 5059 aa9.64□□□□□ -0.87
CLN3-230ENST00000568076 M0QZ58 72 aa9.59□□□□□ -0.87
CLN3-230ENST00000568076 KRTAP12-2P59991 146 aa9.58□□□□□ -0.88
CLN3-230ENST00000568076 KRTAP12-1P59990 96 aa9.54□□□□□ -0.88
CLN3-230ENST00000568076 ROMO1P60602 79 aa9.5□□□□□ -0.89
CLN3-230ENST00000568076 LORP23490 312 aaPredicted RBP9.48□□□□□ -0.89
CLN3-230ENST00000568076 SPINT4Q6UDR6 99 aa9.47□□□□□ -0.89
CLN3-230ENST00000568076 H3BS24 57 aa9.44□□□□□ -0.9
CLN3-230ENST00000568076 R4GN34 69 aa9.44□□□□□ -0.9
CLN3-230ENST00000568076 KRTAP25-1Q3LHN0 102 aa9.43□□□□□ -0.9
CLN3-230ENST00000568076 FLGP20930 4061 aaPredicted RBP9.42□□□□□ -0.9
CLN3-230ENST00000568076 CRIPTQ9P021 101 aa9.41□□□□□ -0.9
CLN3-230ENST00000568076 LINC01554Q52M75 96 aa9.39□□□□□ -0.91
CLN3-230ENST00000568076 LCE2CQ5TA81 110 aa9.28□□□□□ -0.92
CLN3-230ENST00000568076 FAT4Q6V0I7 4981 aa9.21□□□□□ -0.94
CLN3-230ENST00000568076 UBR4Q5T4S7 5183 aa9.21□□□□□ -0.94
CLN3-230ENST00000568076 RNF213Q63HN8 5207 aa9.2□□□□□ -0.94
CLN3-230ENST00000568076 C10orf95Q9H7T3 257 aa9.17□□□□□ -0.94
CLN3-230ENST00000568076 MT1HP80294 61 aa9.03□□□□□ -0.96
CLN3-230ENST00000568076 M0R2T5 61 aa8.95□□□□□ -0.98
CLN3-230ENST00000568076 CAMK2N1Q7Z7J9 78 aa8.9□□□□□ -0.98
CLN3-230ENST00000568076 SPRR2GQ9BYE4 73 aa8.84□□□□□ -0.99
CLN3-230ENST00000568076 KRTAP19-1Q8IUB9 90 aa8.84□□□□□ -0.99
CLN3-230ENST00000568076 MT2AP02795 61 aa8.8□□□□□ -1
CLN3-230ENST00000568076 MT1FP04733 61 aa8.79□□□□□ -1
CLN3-230ENST00000568076 KRTAP9-8Q9BYQ0 159 aa8.79□□□□□ -1
CLN3-230ENST00000568076 KRTAP10-10P60014 251 aa8.73□□□□□ -1.01
CLN3-230ENST00000568076 PLAC4Q8WY50 150 aa8.62□□□□□ -1.03
CLN3-230ENST00000568076 TNP1P09430 55 aa8.53□□□□□ -1.04
CLN3-230ENST00000568076 PP632Q6XCG6 107 aa8.53□□□□□ -1.04
CLN3-230ENST00000568076 KRTAP19-8Q3LI54 63 aa8.52□□□□□ -1.05
CLN3-230ENST00000568076 KRTAP15-1Q3LI76 137 aa8.52□□□□□ -1.05
CLN3-230ENST00000568076 KRTAP9-3Q9BYQ3 159 aa8.44□□□□□ -1.06
CLN3-230ENST00000568076 MT1BP07438 61 aa8.43□□□□□ -1.06
CLN3-230ENST00000568076 KRTAP23-1A1A580 65 aa8.38□□□□□ -1.07
CLN3-230ENST00000568076 KRTAP10-5P60370 271 aa8.29□□□□□ -1.08
CLN3-230ENST00000568076 MT1XP80297 61 aa8.28□□□□□ -1.08
CLN3-230ENST00000568076 LCE2AQ5TA79 106 aaPredicted RBP8.28□□□□□ -1.08
CLN3-230ENST00000568076 LCE3AQ5TA76 89 aa8.18□□□□□ -1.1
CLN3-230ENST00000568076 LCE2BO14633 110 aa8.15□□□□□ -1.1
CLN3-230ENST00000568076 A0A0A0MQY5 61 aa8.13□□□□□ -1.11
CLN3-230ENST00000568076 NDUFAF8A1L188 74 aa8.11□□□□□ -1.11
CLN3-230ENST00000568076 KRTAP10-7P60409 375 aaPredicted RBP8.02□□□□□ -1.13
CLN3-230ENST00000568076 USH2AO75445 5202 aa7.99□□□□□ -1.13
CLN3-230ENST00000568076 KRTAP8-1Q8IUC2 63 aa7.98□□□□□ -1.13
CLN3-230ENST00000568076 PRO2289Q9P1D8 64 aa7.98□□□□□ -1.13
CLN3-230ENST00000568076 KRTAP10-12P60413 245 aa7.97□□□□□ -1.13
CLN3-230ENST00000568076 SPRR5A0A1B0GTR4 108 aa7.87□□□□□ -1.15
CLN3-230ENST00000568076 KRTAP12-3P60328 96 aa7.79□□□□□ -1.16
CLN3-230ENST00000568076 LUZP6Q538Z0 58 aa7.78□□□□□ -1.16
CLN3-230ENST00000568076 KMT2DO14686 5537 aa7.64□□□□□ -1.19
CLN3-230ENST00000568076 KRTAP19-5Q3LI72 72 aa7.61□□□□□ -1.19
CLN3-230ENST00000568076 KRTAP4-8A0A0G2JLE6 195 aa7.6□□□□□ -1.19
CLN3-230ENST00000568076 KRTAP4-8Q9BYQ9 185 aa7.6□□□□□ -1.19
CLN3-230ENST00000568076 SSPOA2VEC9 5147 aa7.58□□□□□ -1.2
CLN3-230ENST00000568076 KRTAP19-6Q3LI70 58 aa7.43□□□□□ -1.22
CLN3-230ENST00000568076 KRTAP19-7Q3SYF9 63 aa7.39□□□□□ -1.23
CLN3-230ENST00000568076 FSIP2Q5CZC0 6907 aa7.37□□□□□ -1.23
CLN3-230ENST00000568076 LCE3CQ5T5A8 94 aa7.32□□□□□ -1.24
CLN3-230ENST00000568076 LCE2DQ5TA82 110 aaPredicted RBP7.24□□□□□ -1.25
CLN3-230ENST00000568076 MT1EP04732 61 aa7.2□□□□□ -1.26
CLN3-230ENST00000568076 MT1LQ93083 61 aa7.14□□□□□ -1.27
CLN3-230ENST00000568076 FCGBPQ9Y6R7 5405 aaPredicted RBP7.11□□□□□ -1.27
CLN3-230ENST00000568076 KRTAP4-7Q9BYR0 210 aa7.11□□□□□ -1.27
CLN3-230ENST00000568076 KRTAP9-6A8MVA2 160 aa7.06□□□□□ -1.28
CLN3-230ENST00000568076 KRTAP19-4Q3LI73 84 aa7.02□□□□□ -1.29
CLN3-230ENST00000568076 KRTAP9-2Q9BYQ4 174 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms