RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 KIAA1109Q2LD37 5005 aa8.67□□□□□ -1.02
LINC00554-201ENST00000564841 TPRXLQ17RH7 258 aa8.66□□□□□ -1.02
LINC00554-201ENST00000564841 A0A0D9SG42 100 aa8.66□□□□□ -1.02
LINC00554-201ENST00000564841 K7ERS5 55 aa8.65□□□□□ -1.02
LINC00554-201ENST00000564841 KRTAP10-4P60372 401 aaPredicted RBP8.65□□□□□ -1.02
LINC00554-201ENST00000564841 Q5VSD8 79 aa8.6□□□□□ -1.03
LINC00554-201ENST00000564841 NDUFAF8A1L188 74 aa8.59□□□□□ -1.03
LINC00554-201ENST00000564841 HSPG2P98160 4391 aa8.58□□□□□ -1.04
LINC00554-201ENST00000564841 KRTAP13-4Q3LI77 160 aa8.58□□□□□ -1.04
LINC00554-201ENST00000564841 MYCBP2O75592 4640 aa8.58□□□□□ -1.04
LINC00554-201ENST00000564841 EPPK1P58107 5090 aaKnown RBP8.56□□□□□ -1.04
LINC00554-201ENST00000564841 PKHD1L1Q86WI1 4243 aa8.54□□□□□ -1.04
LINC00554-201ENST00000564841 KRTAP17-1Q9BYP8 105 aa8.54□□□□□ -1.04
LINC00554-201ENST00000564841 RPL37P61927 97 aaKnown RBP8.5□□□□□ -1.05
LINC00554-201ENST00000564841 RYR1P21817 5038 aa8.5□□□□□ -1.05
LINC00554-201ENST00000564841 KRTAP10-6P60371 365 aaPredicted RBP8.47□□□□□ -1.05
LINC00554-201ENST00000564841 C20orf166-AS1Q96NR2 134 aa8.45□□□□□ -1.06
LINC00554-201ENST00000564841 KRTAP15-1Q3LI76 137 aa8.44□□□□□ -1.06
LINC00554-201ENST00000564841 FAT3Q8TDW7 4589 aa8.41□□□□□ -1.06
LINC00554-201ENST00000564841 RPS29P62273 56 aaKnown RBP8.38□□□□□ -1.07
LINC00554-201ENST00000564841 KRTAP3-3Q9BYR6 98 aa8.37□□□□□ -1.07
LINC00554-201ENST00000564841 TNXBP22105 4242 aa8.37□□□□□ -1.07
LINC00554-201ENST00000564841 KRTAP3-2Q9BYR7 98 aa8.36□□□□□ -1.07
LINC00554-201ENST00000564841 KRTAP10-8P60410 259 aa8.33□□□□□ -1.08
LINC00554-201ENST00000564841 KRTAP12-2P59991 146 aa8.32□□□□□ -1.08
LINC00554-201ENST00000564841 KRTAP4-5Q9BYR2 181 aa8.29□□□□□ -1.08
LINC00554-201ENST00000564841 S4R3F8 94 aa8.28□□□□□ -1.08
LINC00554-201ENST00000564841 LPAP08519 4548 aa8.22□□□□□ -1.09
LINC00554-201ENST00000564841 MT1HL1P0DM35 61 aa8.2□□□□□ -1.1
LINC00554-201ENST00000564841 ABCA13Q86UQ4 5058 aa8.19□□□□□ -1.1
LINC00554-201ENST00000564841 KRTAP12-1P59990 96 aa8.13□□□□□ -1.11
LINC00554-201ENST00000564841 LRP2P98164 4655 aa8.13□□□□□ -1.11
LINC00554-201ENST00000564841 XP32Q5T750 250 aa8.11□□□□□ -1.11
LINC00554-201ENST00000564841 HERC2O95714 4834 aa8.06□□□□□ -1.12
LINC00554-201ENST00000564841 A0A0A0MQY5 61 aa8.05□□□□□ -1.12
LINC00554-201ENST00000564841 J3QL48 77 aa8.01□□□□□ -1.13
LINC00554-201ENST00000564841 MUC2Q02817 5179 aa7.87□□□□□ -1.15
LINC00554-201ENST00000564841 BIRC6Q9NR09 4857 aa7.84□□□□□ -1.15
LINC00554-201ENST00000564841 LUZP6Q538Z0 58 aa7.84□□□□□ -1.15
LINC00554-201ENST00000564841 PLAC4Q8WY50 150 aa7.82□□□□□ -1.16
LINC00554-201ENST00000564841 HERC1Q15751 4861 aa7.81□□□□□ -1.16
LINC00554-201ENST00000564841 PCLOQ9Y6V0 5065 aa7.78□□□□□ -1.16
LINC00554-201ENST00000564841 M0QZ58 72 aa7.75□□□□□ -1.17
LINC00554-201ENST00000564841 LORP23490 312 aaPredicted RBP7.64□□□□□ -1.19
LINC00554-201ENST00000564841 R4GN34 69 aa7.64□□□□□ -1.19
LINC00554-201ENST00000564841 SEC61BP60468 96 aaKnown RBP7.63□□□□□ -1.19
LINC00554-201ENST00000564841 KRTAP4-1Q9BYQ7 146 aa7.62□□□□□ -1.19
LINC00554-201ENST00000564841 RNF213Q63HN8 5207 aa7.56□□□□□ -1.2
LINC00554-201ENST00000564841 MUC17Q685J3 4493 aa7.52□□□□□ -1.21
LINC00554-201ENST00000564841 FAT4Q6V0I7 4981 aa7.46□□□□□ -1.22
LINC00554-201ENST00000564841 HMCN2Q8NDA2 5059 aa7.45□□□□□ -1.22
LINC00554-201ENST00000564841 UBR4Q5T4S7 5183 aa7.43□□□□□ -1.22
LINC00554-201ENST00000564841 CAMK2N1Q7Z7J9 78 aa7.35□□□□□ -1.23
LINC00554-201ENST00000564841 PP632Q6XCG6 107 aa7.25□□□□□ -1.25
LINC00554-201ENST00000564841 KRTAP19-2Q3LHN2 52 aa7.24□□□□□ -1.25
LINC00554-201ENST00000564841 FLGP20930 4061 aaPredicted RBP7.17□□□□□ -1.26
LINC00554-201ENST00000564841 M0R2T5 61 aa7.14□□□□□ -1.27
LINC00554-201ENST00000564841 SPRR5A0A1B0GTR4 108 aa7.04□□□□□ -1.28
LINC00554-201ENST00000564841 TNP1P09430 55 aa7.03□□□□□ -1.28
LINC00554-201ENST00000564841 LCE2CQ5TA81 110 aa7.03□□□□□ -1.28
LINC00554-201ENST00000564841 MT1HP80294 61 aa6.91□□□□□ -1.3
LINC00554-201ENST00000564841 KRTAP10-10P60014 251 aa6.82□□□□□ -1.32
LINC00554-201ENST00000564841 PRO2289Q9P1D8 64 aa6.79□□□□□ -1.32
LINC00554-201ENST00000564841 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
LINC00554-201ENST00000564841 LCE3AQ5TA76 89 aa6.74□□□□□ -1.33
LINC00554-201ENST00000564841 MT1FP04733 61 aa6.74□□□□□ -1.33
LINC00554-201ENST00000564841 MT2AP02795 61 aa6.72□□□□□ -1.33
LINC00554-201ENST00000564841 KRTAP19-1Q8IUB9 90 aa6.67□□□□□ -1.34
LINC00554-201ENST00000564841 KRTAP9-8Q9BYQ0 159 aa6.66□□□□□ -1.34
LINC00554-201ENST00000564841 USH2AO75445 5202 aa6.64□□□□□ -1.35
LINC00554-201ENST00000564841 SPRR2GQ9BYE4 73 aa6.58□□□□□ -1.36
LINC00554-201ENST00000564841 FSIP2Q5CZC0 6907 aa6.56□□□□□ -1.36
LINC00554-201ENST00000564841 INE1O15225 51 aa6.53□□□□□ -1.36
LINC00554-201ENST00000564841 KRTAP9-3Q9BYQ3 159 aa6.38□□□□□ -1.39
LINC00554-201ENST00000564841 KRTAP8-1Q8IUC2 63 aa6.38□□□□□ -1.39
LINC00554-201ENST00000564841 KMT2DO14686 5537 aa6.37□□□□□ -1.39
LINC00554-201ENST00000564841 MT1BP07438 61 aa6.37□□□□□ -1.39
LINC00554-201ENST00000564841 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
LINC00554-201ENST00000564841 KRTAP19-8Q3LI54 63 aa6.31□□□□□ -1.4
LINC00554-201ENST00000564841 KRTAP10-12P60413 245 aa6.3□□□□□ -1.4
LINC00554-201ENST00000564841 LCE2AQ5TA79 106 aaPredicted RBP6.3□□□□□ -1.4
LINC00554-201ENST00000564841 LCE2BO14633 110 aa6.27□□□□□ -1.41
LINC00554-201ENST00000564841 KRTAP10-5P60370 271 aa6.26□□□□□ -1.41
LINC00554-201ENST00000564841 MT1XP80297 61 aa6.25□□□□□ -1.41
LINC00554-201ENST00000564841 KRTAP10-7P60409 375 aaPredicted RBP6.22□□□□□ -1.41
LINC00554-201ENST00000564841 SSPOA2VEC9 5147 aa5.99□□□□□ -1.45
LINC00554-201ENST00000564841 KRTAP9-6A8MVA2 160 aa5.96□□□□□ -1.45
LINC00554-201ENST00000564841 KRTAP4-8A0A0G2JLE6 195 aa5.96□□□□□ -1.46
LINC00554-201ENST00000564841 KRTAP4-8Q9BYQ9 185 aa5.96□□□□□ -1.46
LINC00554-201ENST00000564841 KRTAP19-5Q3LI72 72 aa5.95□□□□□ -1.46
LINC00554-201ENST00000564841 LCE3CQ5T5A8 94 aa5.94□□□□□ -1.46
LINC00554-201ENST00000564841 KRTAP4-7Q9BYR0 210 aa5.84□□□□□ -1.47
LINC00554-201ENST00000564841 KRTAP2-3P0C7H8 128 aa5.71□□□□□ -1.5
LINC00554-201ENST00000564841 KRTAP2-4Q9BYR9 128 aa5.71□□□□□ -1.5
LINC00554-201ENST00000564841 KRTAP2-1Q9BYU5 128 aa5.71□□□□□ -1.5
LINC00554-201ENST00000564841 MUC12Q9UKN1 5478 aa5.67□□□□□ -1.5
LINC00554-201ENST00000564841 FCGBPQ9Y6R7 5405 aaPredicted RBP5.66□□□□□ -1.5
LINC00554-201ENST00000564841 DSTQ03001 7570 aaKnown RBP5.6□□□□□ -1.51
LINC00554-201ENST00000564841 KRTAP19-6Q3LI70 58 aa5.59□□□□□ -1.51
LINC00554-201ENST00000564841 KRTAP19-7Q3SYF9 63 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms