RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 FAT4Q6V0I7 4981 aa4.62□□□□□ -1.67
VPS39-207ENST00000563692 Q1T7F1 81 aa4.62□□□□□ -1.67
VPS39-207ENST00000563692 MPLKIPQ8TAP9 179 aa4.62□□□□□ -1.67
VPS39-207ENST00000563692 KRTAP4-1Q9BYQ7 146 aa4.62□□□□□ -1.67
VPS39-207ENST00000563692 SPTSSBQ8NFR3 76 aa4.61□□□□□ -1.67
VPS39-207ENST00000563692 KRTAP9-2Q9BYQ4 174 aa4.6□□□□□ -1.67
VPS39-207ENST00000563692 RBM12B-AS1Q9P1G2 102 aa4.59□□□□□ -1.67
VPS39-207ENST00000563692 KRTAP3-1Q9BYR8 98 aa4.57□□□□□ -1.68
VPS39-207ENST00000563692 LINC01558Q9Y6Z2 57 aa4.55□□□□□ -1.68
VPS39-207ENST00000563692 H1FX-AS1Q4G0G2 97 aa4.53□□□□□ -1.68
VPS39-207ENST00000563692 PRR15LQ9BU68 103 aa4.53□□□□□ -1.68
VPS39-207ENST00000563692 PSPHP1O15172 72 aa4.51□□□□□ -1.69
VPS39-207ENST00000563692 SEC61GP60059 68 aa4.51□□□□□ -1.69
VPS39-207ENST00000563692 M0R2T5 61 aa4.5□□□□□ -1.69
VPS39-207ENST00000563692 LCE2CQ5TA81 110 aa4.5□□□□□ -1.69
VPS39-207ENST00000563692 A0A1B0GU69 56 aa4.49□□□□□ -1.69
VPS39-207ENST00000563692 MT1HP80294 61 aa4.49□□□□□ -1.69
VPS39-207ENST00000563692 S4R3F8 94 aa4.49□□□□□ -1.69
VPS39-207ENST00000563692 KRTAP19-2Q3LHN2 52 aa4.48□□□□□ -1.69
VPS39-207ENST00000563692 KRTAP9-6A0A140TA67 174 aa4.46□□□□□ -1.7
VPS39-207ENST00000563692 LCE2BO14633 110 aa4.45□□□□□ -1.7
VPS39-207ENST00000563692 Q5VV11 94 aa4.45□□□□□ -1.7
VPS39-207ENST00000563692 LCA10Q71F78 164 aa4.45□□□□□ -1.7
VPS39-207ENST00000563692 CSAG1Q6PB30 78 aa4.42□□□□□ -1.7
VPS39-207ENST00000563692 A6NED7 52 aa4.41□□□□□ -1.7
VPS39-207ENST00000563692 KRTAP10-6P60371 365 aaPredicted RBP4.41□□□□□ -1.7
VPS39-207ENST00000563692 LORP23490 312 aaPredicted RBP4.39□□□□□ -1.71
VPS39-207ENST00000563692 FSIP2Q5CZC0 6907 aa4.38□□□□□ -1.71
VPS39-207ENST00000563692 BRK1Q8WUW1 75 aa4.38□□□□□ -1.71
VPS39-207ENST00000563692 UQCR11O14957 56 aa4.37□□□□□ -1.71
VPS39-207ENST00000563692 CRCT1Q9UGL9 99 aa4.35□□□□□ -1.71
VPS39-207ENST00000563692 A0A1B0GU33 70 aa4.34□□□□□ -1.71
VPS39-207ENST00000563692 LOC100996750A0A140TA64 210 aa4.32□□□□□ -1.72
VPS39-207ENST00000563692 MIR22HGQ0VDD5 57 aa4.32□□□□□ -1.72
VPS39-207ENST00000563692 KRTAP4-6Q9BYQ5 205 aa4.32□□□□□ -1.72
VPS39-207ENST00000563692 CDC42SE1Q9NRR8 79 aa4.32□□□□□ -1.72
VPS39-207ENST00000563692 FLGP20930 4061 aaPredicted RBP4.31□□□□□ -1.72
VPS39-207ENST00000563692 PRO0628Q9UI54 55 aa4.31□□□□□ -1.72
VPS39-207ENST00000563692 H0YAA0 97 aa4.3□□□□□ -1.72
VPS39-207ENST00000563692 SPATA8Q6RVD6 105 aa4.3□□□□□ -1.72
VPS39-207ENST00000563692 ADM2Q7Z4H4 148 aa4.29□□□□□ -1.72
VPS39-207ENST00000563692 P0C880 135 aa4.22□□□□□ -1.73
VPS39-207ENST00000563692 KRTAP9-8Q9BYQ0 159 aa4.22□□□□□ -1.73
VPS39-207ENST00000563692 M0QZ58 72 aa4.21□□□□□ -1.74
VPS39-207ENST00000563692 A8MU10 97 aa4.19□□□□□ -1.74
VPS39-207ENST00000563692 K7ERS5 55 aa4.18□□□□□ -1.74
VPS39-207ENST00000563692 MT2AP02795 61 aa4.18□□□□□ -1.74
VPS39-207ENST00000563692 KRTAP10-10P60014 251 aa4.18□□□□□ -1.74
VPS39-207ENST00000563692 PMAIP1Q13794 54 aa4.17□□□□□ -1.74
VPS39-207ENST00000563692 R4GN34 69 aa4.16□□□□□ -1.74
VPS39-207ENST00000563692 MT1FP04733 61 aa4.14□□□□□ -1.75
VPS39-207ENST00000563692 CRIPTQ9P021 101 aa4.14□□□□□ -1.75
VPS39-207ENST00000563692 KRTAP13-4Q3LI77 160 aa4.13□□□□□ -1.75
VPS39-207ENST00000563692 A0A0D9SG42 100 aa4.12□□□□□ -1.75
VPS39-207ENST00000563692 KRTAP9-3Q9BYQ3 159 aa4.09□□□□□ -1.75
VPS39-207ENST00000563692 A6NN06 94 aa4.08□□□□□ -1.76
VPS39-207ENST00000563692 LINC01554Q52M75 96 aa4.06□□□□□ -1.76
VPS39-207ENST00000563692 SPINT4Q6UDR6 99 aa4.06□□□□□ -1.76
VPS39-207ENST00000563692 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.04□□□□□ -1.76
VPS39-207ENST00000563692 KRTAP19-1Q8IUB9 90 aa4.03□□□□□ -1.76
VPS39-207ENST00000563692 SVIPQ8NHG7 77 aa4.03□□□□□ -1.76
VPS39-207ENST00000563692 USH2AO75445 5202 aa4.02□□□□□ -1.77
VPS39-207ENST00000563692 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
VPS39-207ENST00000563692 KRTAP12-1P59990 96 aa4.01□□□□□ -1.77
VPS39-207ENST00000563692 KRTAP12-2P59991 146 aa4□□□□□ -1.77
VPS39-207ENST00000563692 SSPOA2VEC9 5147 aa3.98□□□□□ -1.77
VPS39-207ENST00000563692 KTN1-AS1Q86SY8 53 aa3.98□□□□□ -1.77
VPS39-207ENST00000563692 SPRR2GQ9BYE4 73 aa3.96□□□□□ -1.78
VPS39-207ENST00000563692 ROMO1P60602 79 aa3.95□□□□□ -1.78
VPS39-207ENST00000563692 KRTAP19-6Q3LI70 58 aa3.95□□□□□ -1.78
VPS39-207ENST00000563692 FCGBPQ9Y6R7 5405 aaPredicted RBP3.94□□□□□ -1.78
VPS39-207ENST00000563692 PLAC4Q8WY50 150 aa3.93□□□□□ -1.78
VPS39-207ENST00000563692 CAMK2N1Q7Z7J9 78 aa3.92□□□□□ -1.78
VPS39-207ENST00000563692 MACF1Q9UPN3 7388 aaKnown RBP3.91□□□□□ -1.78
VPS39-207ENST00000563692 SYNE2Q8WXH0 6885 aaKnown RBP3.9□□□□□ -1.79
VPS39-207ENST00000563692 KRTAP4-8Q9BYQ9 185 aa3.88□□□□□ -1.79
VPS39-207ENST00000563692 KRTAP19-8Q3LI54 63 aa3.84□□□□□ -1.79
VPS39-207ENST00000563692 PRAC1Q96KF2 57 aa3.82□□□□□ -1.8
VPS39-207ENST00000563692 C10orf95Q9H7T3 257 aa3.8□□□□□ -1.8
VPS39-207ENST00000563692 MT1BP07438 61 aa3.78□□□□□ -1.8
VPS39-207ENST00000563692 KRTAP25-1Q3LHN0 102 aa3.78□□□□□ -1.8
VPS39-207ENST00000563692 KRTAP6-3Q3LI67 103 aa3.78□□□□□ -1.8
VPS39-207ENST00000563692 TNP1P09430 55 aa3.74□□□□□ -1.81
VPS39-207ENST00000563692 KRTAP10-5P60370 271 aa3.73□□□□□ -1.81
VPS39-207ENST00000563692 PRO2289Q9P1D8 64 aa3.71□□□□□ -1.82
VPS39-207ENST00000563692 LCE3BQ5TA77 95 aa3.7□□□□□ -1.82
VPS39-207ENST00000563692 PP632Q6XCG6 107 aa3.68□□□□□ -1.82
VPS39-207ENST00000563692 NEBP20929 6669 aa3.66□□□□□ -1.82
VPS39-207ENST00000563692 KRTAP23-1A1A580 65 aa3.65□□□□□ -1.83
VPS39-207ENST00000563692 MT1XP80297 61 aa3.64□□□□□ -1.83
VPS39-207ENST00000563692 KRTAP9-9Q9BYP9 154 aa3.63□□□□□ -1.83
VPS39-207ENST00000563692 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
VPS39-207ENST00000563692 KRTAP4-8A0A0G2JLE6 195 aa3.61□□□□□ -1.83
VPS39-207ENST00000563692 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
VPS39-207ENST00000563692 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
VPS39-207ENST00000563692 KRTAP20-1Q3LI63 56 aa3.53□□□□□ -1.84
VPS39-207ENST00000563692 MUC12Q9UKN1 5478 aa3.53□□□□□ -1.84
VPS39-207ENST00000563692 SPRR2FQ96RM1 72 aa3.52□□□□□ -1.85
VPS39-207ENST00000563692 KRTAP10-12P60413 245 aa3.51□□□□□ -1.85
VPS39-207ENST00000563692 KRTAP8-1Q8IUC2 63 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms