RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KRTAP10-10P60014 251 aa10.25□□□□□ -0.77
SNX1-210ENST00000560260 DMAC1Q96GE9 116 aa10.25□□□□□ -0.77
SNX1-210ENST00000560260 CSAG1Q6PB30 78 aa10.23□□□□□ -0.77
SNX1-210ENST00000560260 COX7CP15954 63 aa10.19□□□□□ -0.78
SNX1-210ENST00000560260 KRTAP9-3Q9BYQ3 159 aa10.17□□□□□ -0.78
SNX1-210ENST00000560260 NDUFC1O43677 76 aa10.12□□□□□ -0.79
SNX1-210ENST00000560260 USH2AO75445 5202 aa10.1□□□□□ -0.79
SNX1-210ENST00000560260 ANAPC13Q9BS18 74 aa10.08□□□□□ -0.8
SNX1-210ENST00000560260 CYSTM1Q9H1C7 97 aa10.07□□□□□ -0.8
SNX1-210ENST00000560260 SPANXA2-OT1Q8N9U9 137 aa10.06□□□□□ -0.8
SNX1-210ENST00000560260 LCE2BO14633 110 aa10.04□□□□□ -0.8
SNX1-210ENST00000560260 FSIP2Q5CZC0 6907 aa10.03□□□□□ -0.8
SNX1-210ENST00000560260 ACYP2P14621 99 aa10.02□□□□□ -0.81
SNX1-210ENST00000560260 H7BZZ5 65 aa9.96□□□□□ -0.82
SNX1-210ENST00000560260 H0YAA0 97 aa9.93□□□□□ -0.82
SNX1-210ENST00000560260 CCDC179H3BU77 68 aa9.93□□□□□ -0.82
SNX1-210ENST00000560260 SSPOA2VEC9 5147 aa9.93□□□□□ -0.82
SNX1-210ENST00000560260 KRTAP19-1Q8IUB9 90 aa9.89□□□□□ -0.83
SNX1-210ENST00000560260 CRCT1Q9UGL9 99 aa9.88□□□□□ -0.83
SNX1-210ENST00000560260 KRTAP9-6A0A140TA67 174 aa9.86□□□□□ -0.83
SNX1-210ENST00000560260 ADM2Q7Z4H4 148 aa9.86□□□□□ -0.83
SNX1-210ENST00000560260 CHKB-CPT1BH3BT56 60 aa9.84□□□□□ -0.83
SNX1-210ENST00000560260 COA5Q86WW8 74 aa9.8□□□□□ -0.84
SNX1-210ENST00000560260 SPRR2GQ9BYE4 73 aa9.8□□□□□ -0.84
SNX1-210ENST00000560260 KRTAP3-2Q9BYR7 98 aa9.78□□□□□ -0.84
SNX1-210ENST00000560260 SPTSSBQ8NFR3 76 aa9.77□□□□□ -0.85
SNX1-210ENST00000560260 P0C880 135 aa9.76□□□□□ -0.85
SNX1-210ENST00000560260 CRIPTQ9P021 101 aa9.74□□□□□ -0.85
SNX1-210ENST00000560260 KRTAP19-8Q3LI54 63 aa9.68□□□□□ -0.86
SNX1-210ENST00000560260 MT1BP07438 61 aa9.65□□□□□ -0.86
SNX1-210ENST00000560260 Q5VV11 94 aa9.57□□□□□ -0.88
SNX1-210ENST00000560260 FCGBPQ9Y6R7 5405 aaPredicted RBP9.57□□□□□ -0.88
SNX1-210ENST00000560260 KRTAP19-6Q3LI70 58 aa9.56□□□□□ -0.88
SNX1-210ENST00000560260 ATP5EP56381 51 aaPredicted RBP9.56□□□□□ -0.88
SNX1-210ENST00000560260 R4GN34 69 aa9.53□□□□□ -0.88
SNX1-210ENST00000560260 M0QZ58 72 aa9.52□□□□□ -0.89
SNX1-210ENST00000560260 TMEM258P61165 79 aa9.52□□□□□ -0.89
SNX1-210ENST00000560260 KRTAP13-4Q3LI77 160 aa9.35□□□□□ -0.91
SNX1-210ENST00000560260 LINC01554Q52M75 96 aa9.34□□□□□ -0.91
SNX1-210ENST00000560260 SEC61GP60059 68 aa9.31□□□□□ -0.92
SNX1-210ENST00000560260 SERP1Q9Y6X1 66 aa9.31□□□□□ -0.92
SNX1-210ENST00000560260 KRTAP10-5P60370 271 aa9.29□□□□□ -0.92
SNX1-210ENST00000560260 PCP4P48539 62 aa9.27□□□□□ -0.93
SNX1-210ENST00000560260 A6NN06 94 aa9.26□□□□□ -0.93
SNX1-210ENST00000560260 PLAC4Q8WY50 150 aa9.23□□□□□ -0.93
SNX1-210ENST00000560260 A0A1B0GU69 56 aa9.22□□□□□ -0.93
SNX1-210ENST00000560260 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.21□□□□□ -0.94
SNX1-210ENST00000560260 A0A1B0GU33 70 aa9.18□□□□□ -0.94
SNX1-210ENST00000560260 MT1XP80297 61 aa9.16□□□□□ -0.94
SNX1-210ENST00000560260 LINC01558Q9Y6Z2 57 aa9.16□□□□□ -0.94
SNX1-210ENST00000560260 SPATA8Q6RVD6 105 aa9.14□□□□□ -0.95
SNX1-210ENST00000560260 MACF1Q9UPN3 7388 aaKnown RBP9.12□□□□□ -0.95
SNX1-210ENST00000560260 A0A0D9SG42 100 aa9.05□□□□□ -0.96
SNX1-210ENST00000560260 PRR15LQ9BU68 103 aa9.04□□□□□ -0.96
SNX1-210ENST00000560260 PRO2289Q9P1D8 64 aa9.02□□□□□ -0.97
SNX1-210ENST00000560260 SYNE2Q8WXH0 6885 aaKnown RBP8.94□□□□□ -0.98
SNX1-210ENST00000560260 A8MU10 97 aa8.93□□□□□ -0.98
SNX1-210ENST00000560260 KRTAP9-7A8MTY7 169 aa8.92□□□□□ -0.98
SNX1-210ENST00000560260 KRTAP12-1P59990 96 aa8.91□□□□□ -0.98
SNX1-210ENST00000560260 SMIM26A0A096LP01 95 aa8.88□□□□□ -0.99
SNX1-210ENST00000560260 Q1T7F1 81 aa8.87□□□□□ -0.99
SNX1-210ENST00000560260 KRTAP12-2P59991 146 aa8.85□□□□□ -0.99
SNX1-210ENST00000560260 SPINT4Q6UDR6 99 aa8.85□□□□□ -0.99
SNX1-210ENST00000560260 CAMK2N1Q7Z7J9 78 aa8.83□□□□□ -1
SNX1-210ENST00000560260 V9GYY9 64 aa8.83□□□□□ -1
SNX1-210ENST00000560260 RPS28P62857 69 aaKnown RBP8.82□□□□□ -1
SNX1-210ENST00000560260 PSPHP1O15172 72 aa8.8□□□□□ -1
SNX1-210ENST00000560260 KMT2DO14686 5537 aa8.8□□□□□ -1
SNX1-210ENST00000560260 UQCR11O14957 56 aa8.79□□□□□ -1
SNX1-210ENST00000560260 KRTAP10-7P60409 375 aaPredicted RBP8.76□□□□□ -1.01
SNX1-210ENST00000560260 KRTAP6-3Q3LI67 103 aa8.74□□□□□ -1.01
SNX1-210ENST00000560260 KRTAP10-12P60413 245 aa8.68□□□□□ -1.02
SNX1-210ENST00000560260 MIR22HGQ0VDD5 57 aa8.65□□□□□ -1.02
SNX1-210ENST00000560260 KRTAP4-8A0A0G2JLE6 195 aa8.62□□□□□ -1.03
SNX1-210ENST00000560260 KRTAP4-8Q9BYQ9 185 aa8.62□□□□□ -1.03
SNX1-210ENST00000560260 MUC12Q9UKN1 5478 aa8.57□□□□□ -1.04
SNX1-210ENST00000560260 KRTAP5-9P26371 169 aa8.56□□□□□ -1.04
SNX1-210ENST00000560260 KRTAP8-1Q8IUC2 63 aa8.53□□□□□ -1.04
SNX1-210ENST00000560260 A6NED7 52 aa8.49□□□□□ -1.05
SNX1-210ENST00000560260 C10orf95Q9H7T3 257 aa8.49□□□□□ -1.05
SNX1-210ENST00000560260 MDN1Q9NU22 5596 aa8.41□□□□□ -1.06
SNX1-210ENST00000560260 SPRR2FQ96RM1 72 aa8.41□□□□□ -1.06
SNX1-210ENST00000560260 NEBP20929 6669 aa8.38□□□□□ -1.07
SNX1-210ENST00000560260 K7ERS5 55 aa8.3□□□□□ -1.08
SNX1-210ENST00000560260 TNP1P09430 55 aa8.27□□□□□ -1.09
SNX1-210ENST00000560260 CDC42SE1Q9NRR8 79 aa8.24□□□□□ -1.09
SNX1-210ENST00000560260 KRTAP19-7Q3SYF9 63 aa8.19□□□□□ -1.1
SNX1-210ENST00000560260 SPRR2EP22531 72 aa8.17□□□□□ -1.1
SNX1-210ENST00000560260 SPRR2BP35325 72 aa8.17□□□□□ -1.1
SNX1-210ENST00000560260 SPRR2AP35326 72 aa8.17□□□□□ -1.1
SNX1-210ENST00000560260 LCE1AQ5T7P2 110 aa8.17□□□□□ -1.1
SNX1-210ENST00000560260 LCE3AQ5TA76 89 aa8.16□□□□□ -1.1
SNX1-210ENST00000560260 MT1EP04732 61 aa8.08□□□□□ -1.12
SNX1-210ENST00000560260 KRTAP19-5Q3LI72 72 aa8.08□□□□□ -1.12
SNX1-210ENST00000560260 KRTAP25-1Q3LHN0 102 aa8.05□□□□□ -1.12
SNX1-210ENST00000560260 ROMO1P60602 79 aa7.92□□□□□ -1.14
SNX1-210ENST00000560260 SPRR2DP22532 72 aa7.89□□□□□ -1.15
SNX1-210ENST00000560260 KRTAP19-3Q7Z4W3 81 aa7.88□□□□□ -1.15
SNX1-210ENST00000560260 KRTAP20-1Q3LI63 56 aa7.86□□□□□ -1.15
SNX1-210ENST00000560260 BRK1Q8WUW1 75 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms