RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 A8MU10 97 aa6.17□□□□□ -1.42
USP3-218ENST00000560202 KRTAP13-3Q3SY46 172 aa6.14□□□□□ -1.43
USP3-218ENST00000560202 TPRXLQ17RH7 258 aa6.1□□□□□ -1.43
USP3-218ENST00000560202 C20orf166-AS1Q96NR2 134 aa6.1□□□□□ -1.43
USP3-218ENST00000560202 HERC1Q15751 4861 aa6.09□□□□□ -1.43
USP3-218ENST00000560202 A8MUU9 505 aa6.08□□□□□ -1.44
USP3-218ENST00000560202 HRES1P13985 223 aa6.08□□□□□ -1.44
USP3-218ENST00000560202 XP32Q5T750 250 aa6.07□□□□□ -1.44
USP3-218ENST00000560202 PCOTHQ58A44 107 aa6.07□□□□□ -1.44
USP3-218ENST00000560202 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.05□□□□□ -1.44
USP3-218ENST00000560202 SPINK7P58062 85 aa6.05□□□□□ -1.44
USP3-218ENST00000560202 LPAP08519 4548 aa6.05□□□□□ -1.44
USP3-218ENST00000560202 Q5W150 140 aa6.04□□□□□ -1.44
USP3-218ENST00000560202 ACYP2P14621 99 aa6.04□□□□□ -1.44
USP3-218ENST00000560202 KRTAP9-2Q9BYQ4 174 aa6.04□□□□□ -1.44
USP3-218ENST00000560202 RPL37P61927 97 aaKnown RBP6.03□□□□□ -1.44
USP3-218ENST00000560202 HMCN2Q8NDA2 5059 aa6.02□□□□□ -1.45
USP3-218ENST00000560202 KRTAP9-6A0A140TA67 174 aa6.01□□□□□ -1.45
USP3-218ENST00000560202 LRP2P98164 4655 aa5.98□□□□□ -1.45
USP3-218ENST00000560202 SPATA8Q6RVD6 105 aa5.98□□□□□ -1.45
USP3-218ENST00000560202 LINC01554Q52M75 96 aa5.96□□□□□ -1.46
USP3-218ENST00000560202 DMAC1Q96GE9 116 aa5.96□□□□□ -1.46
USP3-218ENST00000560202 A0A1B0GU69 56 aa5.93□□□□□ -1.46
USP3-218ENST00000560202 IGKV2-30P06310 120 aa5.93□□□□□ -1.46
USP3-218ENST00000560202 IGKV2D-30A0A075B6S6 120 aa5.91□□□□□ -1.46
USP3-218ENST00000560202 UQCR11O14957 56 aa5.91□□□□□ -1.46
USP3-218ENST00000560202 SEC61BP60468 96 aaKnown RBP5.9□□□□□ -1.47
USP3-218ENST00000560202 MUC17Q685J3 4493 aa5.88□□□□□ -1.47
USP3-218ENST00000560202 MIR22HGQ0VDD5 57 aa5.88□□□□□ -1.47
USP3-218ENST00000560202 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
USP3-218ENST00000560202 PRAC1Q96KF2 57 aa5.85□□□□□ -1.47
USP3-218ENST00000560202 KRTAP4-8A0A0G2JLE6 195 aa5.82□□□□□ -1.48
USP3-218ENST00000560202 KRTAP4-1Q9BYQ7 146 aa5.78□□□□□ -1.48
USP3-218ENST00000560202 ADM2Q7Z4H4 148 aa5.76□□□□□ -1.49
USP3-218ENST00000560202 H3BS24 57 aa5.74□□□□□ -1.49
USP3-218ENST00000560202 UBR4Q5T4S7 5183 aa5.73□□□□□ -1.49
USP3-218ENST00000560202 KRTAP9-9Q9BYP9 154 aa5.72□□□□□ -1.49
USP3-218ENST00000560202 KRTAP9-4Q9BYQ2 154 aa5.72□□□□□ -1.49
USP3-218ENST00000560202 CSAG1Q6PB30 78 aa5.72□□□□□ -1.49
USP3-218ENST00000560202 COX6B2Q6YFQ2 88 aa5.72□□□□□ -1.49
USP3-218ENST00000560202 MUC2Q02817 5179 aa5.7□□□□□ -1.5
USP3-218ENST00000560202 KRTAP3-1Q9BYR8 98 aa5.69□□□□□ -1.5
USP3-218ENST00000560202 RNF213Q63HN8 5207 aa5.69□□□□□ -1.5
USP3-218ENST00000560202 KRTAP4-7Q9BYR0 210 aa5.68□□□□□ -1.5
USP3-218ENST00000560202 KRTAP25-1Q3LHN0 102 aa5.63□□□□□ -1.51
USP3-218ENST00000560202 KRTAP4-12Q9BQ66 201 aa5.61□□□□□ -1.51
USP3-218ENST00000560202 KRTAP19-2Q3LHN2 52 aa5.6□□□□□ -1.51
USP3-218ENST00000560202 H1FX-AS1Q4G0G2 97 aa5.6□□□□□ -1.51
USP3-218ENST00000560202 ROMO1P60602 79 aa5.56□□□□□ -1.52
USP3-218ENST00000560202 K7ERS5 55 aa5.56□□□□□ -1.52
USP3-218ENST00000560202 S4R3F8 94 aa5.53□□□□□ -1.52
USP3-218ENST00000560202 A0A1B0GU33 70 aa5.52□□□□□ -1.53
USP3-218ENST00000560202 H0YAA0 97 aa5.52□□□□□ -1.53
USP3-218ENST00000560202 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
USP3-218ENST00000560202 FAT4Q6V0I7 4981 aa5.48□□□□□ -1.53
USP3-218ENST00000560202 FLGP20930 4061 aaPredicted RBP5.47□□□□□ -1.53
USP3-218ENST00000560202 MT1HP80294 61 aa5.41□□□□□ -1.54
USP3-218ENST00000560202 KRTAP4-2Q9BYR5 136 aa5.41□□□□□ -1.54
USP3-218ENST00000560202 KRTAP4-9Q9BYQ8 210 aa5.4□□□□□ -1.55
USP3-218ENST00000560202 KRTAP19-1Q8IUB9 90 aa5.36□□□□□ -1.55
USP3-218ENST00000560202 M0R2T5 61 aa5.35□□□□□ -1.55
USP3-218ENST00000560202 KRTAP5-3Q6L8H2 238 aa5.34□□□□□ -1.55
USP3-218ENST00000560202 P0C880 135 aa5.3□□□□□ -1.56
USP3-218ENST00000560202 KRTAP9-8Q9BYQ0 159 aa5.29□□□□□ -1.56
USP3-218ENST00000560202 KRTAP10-6P60371 365 aaPredicted RBP5.25□□□□□ -1.57
USP3-218ENST00000560202 SPINT4Q6UDR6 99 aa5.24□□□□□ -1.57
USP3-218ENST00000560202 CRIPTQ9P021 101 aa5.19□□□□□ -1.58
USP3-218ENST00000560202 KRTAP15-1Q3LI76 137 aa5.18□□□□□ -1.58
USP3-218ENST00000560202 MT2AP02795 61 aa5.17□□□□□ -1.58
USP3-218ENST00000560202 MT1FP04733 61 aa5.14□□□□□ -1.59
USP3-218ENST00000560202 KRTAP10-10P60014 251 aa5.13□□□□□ -1.59
USP3-218ENST00000560202 M0QZ58 72 aa5.1□□□□□ -1.59
USP3-218ENST00000560202 KRTAP13-4Q3LI77 160 aa5.1□□□□□ -1.59
USP3-218ENST00000560202 R4GN34 69 aa5.1□□□□□ -1.59
USP3-218ENST00000560202 NDUFAF8A1L188 74 aa5.08□□□□□ -1.6
USP3-218ENST00000560202 KRTAP4-11Q9BYQ6 195 aa5.08□□□□□ -1.6
USP3-218ENST00000560202 A0A0D9SG42 100 aa5.05□□□□□ -1.6
USP3-218ENST00000560202 SPRR2GQ9BYE4 73 aa5.02□□□□□ -1.61
USP3-218ENST00000560202 KRTAP9-3Q9BYQ3 159 aa5.02□□□□□ -1.61
USP3-218ENST00000560202 C10orf95Q9H7T3 257 aa4.99□□□□□ -1.61
USP3-218ENST00000560202 KRTAP12-1P59990 96 aa4.98□□□□□ -1.61
USP3-218ENST00000560202 KRTAP12-2P59991 146 aa4.97□□□□□ -1.61
USP3-218ENST00000560202 KRTAP19-4Q3LI73 84 aa4.96□□□□□ -1.61
USP3-218ENST00000560202 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
USP3-218ENST00000560202 KRTAP19-8Q3LI54 63 aa4.9□□□□□ -1.62
USP3-218ENST00000560202 MT1BP07438 61 aa4.85□□□□□ -1.63
USP3-218ENST00000560202 KRTAP9-7A8MTY7 169 aa4.84□□□□□ -1.63
USP3-218ENST00000560202 PLAC4Q8WY50 150 aa4.83□□□□□ -1.64
USP3-218ENST00000560202 USH2AO75445 5202 aa4.82□□□□□ -1.64
USP3-218ENST00000560202 A0A0A0MQY5 61 aa4.81□□□□□ -1.64
USP3-218ENST00000560202 LUZP6Q538Z0 58 aa4.8□□□□□ -1.64
USP3-218ENST00000560202 PP632Q6XCG6 107 aa4.8□□□□□ -1.64
USP3-218ENST00000560202 CAMK2N1Q7Z7J9 78 aa4.77□□□□□ -1.65
USP3-218ENST00000560202 LCE5AQ5TCM9 118 aa4.69□□□□□ -1.66
USP3-218ENST00000560202 FSIP2Q5CZC0 6907 aa4.68□□□□□ -1.66
USP3-218ENST00000560202 SSPOA2VEC9 5147 aa4.67□□□□□ -1.66
USP3-218ENST00000560202 MT1XP80297 61 aa4.67□□□□□ -1.66
USP3-218ENST00000560202 KRTAP10-5P60370 271 aa4.66□□□□□ -1.66
USP3-218ENST00000560202 KRTAP23-1A1A580 65 aa4.63□□□□□ -1.67
USP3-218ENST00000560202 PRO2289Q9P1D8 64 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms