RNA–Protein interactions for RNA: ENST00000558958.1

CLPX-203, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 1,493 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-203ENST00000558958 MT1HP80294 61 aa8.87□□□□□ -0.99
CLPX-203ENST00000558958 S4R3F8 94 aa8.84□□□□□ -0.99
CLPX-203ENST00000558958 TMEM258P61165 79 aa8.83□□□□□ -1
CLPX-203ENST00000558958 LCA10Q71F78 164 aa8.81□□□□□ -1
CLPX-203ENST00000558958 ATP5EP56381 51 aaPredicted RBP8.8□□□□□ -1
CLPX-203ENST00000558958 LCE2AQ5TA79 106 aaPredicted RBP8.77□□□□□ -1.01
CLPX-203ENST00000558958 M0R2T5 61 aa8.75□□□□□ -1.01
CLPX-203ENST00000558958 COA5Q86WW8 74 aa8.72□□□□□ -1.01
CLPX-203ENST00000558958 CHKB-CPT1BH3BT56 60 aa8.7□□□□□ -1.02
CLPX-203ENST00000558958 CSAG1Q6PB30 78 aa8.69□□□□□ -1.02
CLPX-203ENST00000558958 SPTSSBQ8NFR3 76 aa8.61□□□□□ -1.03
CLPX-203ENST00000558958 KRTAP10-6P60371 365 aaPredicted RBP8.6□□□□□ -1.03
CLPX-203ENST00000558958 LORP23490 312 aaPredicted RBP8.57□□□□□ -1.04
CLPX-203ENST00000558958 SERP1Q9Y6X1 66 aa8.56□□□□□ -1.04
CLPX-203ENST00000558958 KRTAP9-8Q9BYQ0 159 aa8.51□□□□□ -1.05
CLPX-203ENST00000558958 H0YAA0 97 aa8.47□□□□□ -1.05
CLPX-203ENST00000558958 MT2AP02795 61 aa8.45□□□□□ -1.06
CLPX-203ENST00000558958 RPS28P62857 69 aaKnown RBP8.41□□□□□ -1.06
CLPX-203ENST00000558958 ADM2Q7Z4H4 148 aa8.4□□□□□ -1.06
CLPX-203ENST00000558958 MT1FP04733 61 aa8.38□□□□□ -1.07
CLPX-203ENST00000558958 KRTAP10-10P60014 251 aa8.36□□□□□ -1.07
CLPX-203ENST00000558958 P0C880 135 aa8.32□□□□□ -1.08
CLPX-203ENST00000558958 LCE2BO14633 110 aa8.29□□□□□ -1.08
CLPX-203ENST00000558958 SEC61GP60059 68 aa8.29□□□□□ -1.08
CLPX-203ENST00000558958 LINC01558Q9Y6Z2 57 aa8.29□□□□□ -1.08
CLPX-203ENST00000558958 SMIM26A0A096LP01 95 aa8.28□□□□□ -1.08
CLPX-203ENST00000558958 A0A1B0GU69 56 aa8.25□□□□□ -1.09
CLPX-203ENST00000558958 KRTAP9-3Q9BYQ3 159 aa8.22□□□□□ -1.09
CLPX-203ENST00000558958 Q1T7F1 81 aa8.21□□□□□ -1.09
CLPX-203ENST00000558958 CRIPTQ9P021 101 aa8.21□□□□□ -1.09
CLPX-203ENST00000558958 V9GYY9 64 aa8.2□□□□□ -1.1
CLPX-203ENST00000558958 PRR15LQ9BU68 103 aa8.18□□□□□ -1.1
CLPX-203ENST00000558958 KRTAP19-1Q8IUB9 90 aa8.13□□□□□ -1.11
CLPX-203ENST00000558958 R4GN34 69 aa8.13□□□□□ -1.11
CLPX-203ENST00000558958 SPRR2GQ9BYE4 73 aa8.13□□□□□ -1.11
CLPX-203ENST00000558958 A0A1B0GU33 70 aa8.11□□□□□ -1.11
CLPX-203ENST00000558958 M0QZ58 72 aa8.1□□□□□ -1.11
CLPX-203ENST00000558958 PSPHP1O15172 72 aa8.07□□□□□ -1.12
CLPX-203ENST00000558958 KRTAP13-4Q3LI77 160 aa8.05□□□□□ -1.12
CLPX-203ENST00000558958 Q5VV11 94 aa8.01□□□□□ -1.13
CLPX-203ENST00000558958 USH2AO75445 5202 aa8□□□□□ -1.13
CLPX-203ENST00000558958 SPATA8Q6RVD6 105 aa7.99□□□□□ -1.13
CLPX-203ENST00000558958 KRTAP19-8Q3LI54 63 aa7.96□□□□□ -1.13
CLPX-203ENST00000558958 UQCR11O14957 56 aa7.94□□□□□ -1.14
CLPX-203ENST00000558958 LINC01554Q52M75 96 aa7.94□□□□□ -1.14
CLPX-203ENST00000558958 KRTAP9-2Q9BYQ4 174 aa7.93□□□□□ -1.14
CLPX-203ENST00000558958 MT1BP07438 61 aa7.88□□□□□ -1.15
CLPX-203ENST00000558958 A0A0D9SG42 100 aa7.86□□□□□ -1.15
CLPX-203ENST00000558958 A6NN06 94 aa7.83□□□□□ -1.16
CLPX-203ENST00000558958 A8MU10 97 aa7.83□□□□□ -1.16
CLPX-203ENST00000558958 MIR22HGQ0VDD5 57 aa7.83□□□□□ -1.16
CLPX-203ENST00000558958 A6NED7 52 aa7.82□□□□□ -1.16
CLPX-203ENST00000558958 FSIP2Q5CZC0 6907 aa7.81□□□□□ -1.16
CLPX-203ENST00000558958 SSPOA2VEC9 5147 aa7.78□□□□□ -1.16
CLPX-203ENST00000558958 PLAC4Q8WY50 150 aa7.77□□□□□ -1.17
CLPX-203ENST00000558958 KRTAP12-1P59990 96 aa7.73□□□□□ -1.17
CLPX-203ENST00000558958 SPINT4Q6UDR6 99 aa7.69□□□□□ -1.18
CLPX-203ENST00000558958 KRTAP12-2P59991 146 aa7.68□□□□□ -1.18
CLPX-203ENST00000558958 CDC42SE1Q9NRR8 79 aa7.65□□□□□ -1.18
CLPX-203ENST00000558958 KRTAP19-6Q3LI70 58 aa7.62□□□□□ -1.19
CLPX-203ENST00000558958 CRCT1Q9UGL9 99 aa7.6□□□□□ -1.19
CLPX-203ENST00000558958 CAMK2N1Q7Z7J9 78 aa7.57□□□□□ -1.2
CLPX-203ENST00000558958 MT1XP80297 61 aa7.55□□□□□ -1.2
CLPX-203ENST00000558958 KRTAP10-5P60370 271 aa7.55□□□□□ -1.2
CLPX-203ENST00000558958 K7ERS5 55 aa7.52□□□□□ -1.21
CLPX-203ENST00000558958 FCGBPQ9Y6R7 5405 aaPredicted RBP7.51□□□□□ -1.21
CLPX-203ENST00000558958 PRO2289Q9P1D8 64 aa7.5□□□□□ -1.21
CLPX-203ENST00000558958 BRK1Q8WUW1 75 aa7.49□□□□□ -1.21
CLPX-203ENST00000558958 KRTAP9-6A0A140TA67 174 aa7.43□□□□□ -1.22
CLPX-203ENST00000558958 C10orf95Q9H7T3 257 aa7.33□□□□□ -1.24
CLPX-203ENST00000558958 KRTAP10-7P60409 375 aaPredicted RBP7.23□□□□□ -1.25
CLPX-203ENST00000558958 KRTAP10-12P60413 245 aa7.17□□□□□ -1.26
CLPX-203ENST00000558958 ROMO1P60602 79 aa7.17□□□□□ -1.26
CLPX-203ENST00000558958 PRO0628Q9UI54 55 aa7.17□□□□□ -1.26
CLPX-203ENST00000558958 TNP1P09430 55 aa7.16□□□□□ -1.26
CLPX-203ENST00000558958 MACF1Q9UPN3 7388 aaKnown RBP7.11□□□□□ -1.27
CLPX-203ENST00000558958 KMT2DO14686 5537 aa7.1□□□□□ -1.27
CLPX-203ENST00000558958 PMAIP1Q13794 54 aa7.09□□□□□ -1.27
CLPX-203ENST00000558958 KRTAP25-1Q3LHN0 102 aa7.09□□□□□ -1.27
CLPX-203ENST00000558958 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.04□□□□□ -1.28
CLPX-203ENST00000558958 KRTAP4-8A0A0G2JLE6 195 aa7.02□□□□□ -1.29
CLPX-203ENST00000558958 KRTAP4-8Q9BYQ9 185 aa7.02□□□□□ -1.29
CLPX-203ENST00000558958 SYNE2Q8WXH0 6885 aaKnown RBP6.97□□□□□ -1.29
CLPX-203ENST00000558958 H3BS24 57 aa6.94□□□□□ -1.3
CLPX-203ENST00000558958 LCE3AQ5TA76 89 aa6.92□□□□□ -1.3
CLPX-203ENST00000558958 KRTAP8-1Q8IUC2 63 aa6.91□□□□□ -1.3
CLPX-203ENST00000558958 KRTAP23-1A1A580 65 aa6.86□□□□□ -1.31
CLPX-203ENST00000558958 KRTAP6-3Q3LI67 103 aa6.8□□□□□ -1.32
CLPX-203ENST00000558958 KRTAP5-9P26371 169 aa6.78□□□□□ -1.32
CLPX-203ENST00000558958 PP632Q6XCG6 107 aa6.77□□□□□ -1.33
CLPX-203ENST00000558958 KRTAP9-7A8MTY7 169 aa6.75□□□□□ -1.33
CLPX-203ENST00000558958 KRTAP19-5Q3LI72 72 aa6.74□□□□□ -1.33
CLPX-203ENST00000558958 KRTAP19-7Q3SYF9 63 aa6.74□□□□□ -1.33
CLPX-203ENST00000558958 SPRR2FQ96RM1 72 aa6.73□□□□□ -1.33
CLPX-203ENST00000558958 KTN1-AS1Q86SY8 53 aa6.69□□□□□ -1.34
CLPX-203ENST00000558958 MUC12Q9UKN1 5478 aa6.69□□□□□ -1.34
CLPX-203ENST00000558958 PRAC1Q96KF2 57 aa6.66□□□□□ -1.34
CLPX-203ENST00000558958 KRTAP12-3P60328 96 aa6.66□□□□□ -1.34
CLPX-203ENST00000558958 MDN1Q9NU22 5596 aa6.64□□□□□ -1.35
CLPX-203ENST00000558958 MT1EP04732 61 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms