RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 COX6B2Q6YFQ2 88 aa6.52□□□□□ -1.37
LDLR-205ENST00000557933 KRTAP25-1Q3LHN0 102 aa6.5□□□□□ -1.37
LDLR-205ENST00000557933 LPAP08519 4548 aa6.5□□□□□ -1.37
LDLR-205ENST00000557933 C20orf166-AS1Q96NR2 134 aa6.48□□□□□ -1.37
LDLR-205ENST00000557933 RYR1P21817 5038 aa6.46□□□□□ -1.38
LDLR-205ENST00000557933 RPS29P62273 56 aaKnown RBP6.45□□□□□ -1.38
LDLR-205ENST00000557933 KRTAP13-4Q3LI77 160 aa6.45□□□□□ -1.38
LDLR-205ENST00000557933 C10orf95Q9H7T3 257 aa6.43□□□□□ -1.38
LDLR-205ENST00000557933 KRTAP10-8P60410 259 aa6.41□□□□□ -1.38
LDLR-205ENST00000557933 ROMO1P60602 79 aa6.4□□□□□ -1.38
LDLR-205ENST00000557933 Q5VSD8 79 aa6.4□□□□□ -1.38
LDLR-205ENST00000557933 K7ERS5 55 aa6.38□□□□□ -1.39
LDLR-205ENST00000557933 EPPK1P58107 5090 aaKnown RBP6.36□□□□□ -1.39
LDLR-205ENST00000557933 P0C880 135 aa6.36□□□□□ -1.39
LDLR-205ENST00000557933 LRP2P98164 4655 aa6.35□□□□□ -1.39
LDLR-205ENST00000557933 KRTAP10-6P60371 365 aaPredicted RBP6.35□□□□□ -1.39
LDLR-205ENST00000557933 KRTAP3-3Q9BYR6 98 aa6.34□□□□□ -1.39
LDLR-205ENST00000557933 TNXBP22105 4242 aa6.33□□□□□ -1.4
LDLR-205ENST00000557933 KRTAP17-1Q9BYP8 105 aa6.31□□□□□ -1.4
LDLR-205ENST00000557933 KIAA1109Q2LD37 5005 aa6.31□□□□□ -1.4
LDLR-205ENST00000557933 TPRXLQ17RH7 258 aa6.3□□□□□ -1.4
LDLR-205ENST00000557933 RPL37P61927 97 aaKnown RBP6.3□□□□□ -1.4
LDLR-205ENST00000557933 SPINT4Q6UDR6 99 aa6.29□□□□□ -1.4
LDLR-205ENST00000557933 KRTAP3-2Q9BYR7 98 aa6.27□□□□□ -1.41
LDLR-205ENST00000557933 BIRC6Q9NR09 4857 aa6.26□□□□□ -1.41
LDLR-205ENST00000557933 S4R3F8 94 aa6.25□□□□□ -1.41
LDLR-205ENST00000557933 KRTAP12-2P59991 146 aa6.23□□□□□ -1.41
LDLR-205ENST00000557933 XP32Q5T750 250 aa6.21□□□□□ -1.42
LDLR-205ENST00000557933 MT1HL1P0DM35 61 aa6.21□□□□□ -1.42
LDLR-205ENST00000557933 ABCA13Q86UQ4 5058 aa6.2□□□□□ -1.42
LDLR-205ENST00000557933 HERC2O95714 4834 aa6.2□□□□□ -1.42
LDLR-205ENST00000557933 NDUFAF8A1L188 74 aa6.12□□□□□ -1.43
LDLR-205ENST00000557933 KRTAP4-5Q9BYR2 181 aa6.12□□□□□ -1.43
LDLR-205ENST00000557933 MUC2Q02817 5179 aa6.1□□□□□ -1.43
LDLR-205ENST00000557933 KRTAP12-1P59990 96 aa6.08□□□□□ -1.44
LDLR-205ENST00000557933 M0QZ58 72 aa5.97□□□□□ -1.45
LDLR-205ENST00000557933 KRTAP15-1Q3LI76 137 aa5.95□□□□□ -1.46
LDLR-205ENST00000557933 J3QL48 77 aa5.95□□□□□ -1.46
LDLR-205ENST00000557933 LORP23490 312 aaPredicted RBP5.93□□□□□ -1.46
LDLR-205ENST00000557933 R4GN34 69 aa5.9□□□□□ -1.47
LDLR-205ENST00000557933 MUC17Q685J3 4493 aa5.86□□□□□ -1.47
LDLR-205ENST00000557933 PCLOQ9Y6V0 5065 aa5.85□□□□□ -1.47
LDLR-205ENST00000557933 FAT4Q6V0I7 4981 aa5.75□□□□□ -1.49
LDLR-205ENST00000557933 KRTAP4-1Q9BYQ7 146 aa5.75□□□□□ -1.49
LDLR-205ENST00000557933 SEC61BP60468 96 aaKnown RBP5.74□□□□□ -1.49
LDLR-205ENST00000557933 HMCN2Q8NDA2 5059 aa5.69□□□□□ -1.5
LDLR-205ENST00000557933 PLAC4Q8WY50 150 aa5.68□□□□□ -1.5
LDLR-205ENST00000557933 CAMK2N1Q7Z7J9 78 aa5.67□□□□□ -1.5
LDLR-205ENST00000557933 HERC1Q15751 4861 aa5.63□□□□□ -1.51
LDLR-205ENST00000557933 RNF213Q63HN8 5207 aa5.6□□□□□ -1.51
LDLR-205ENST00000557933 A0A0A0MQY5 61 aa5.53□□□□□ -1.52
LDLR-205ENST00000557933 KRTAP19-2Q3LHN2 52 aa5.5□□□□□ -1.53
LDLR-205ENST00000557933 FLGP20930 4061 aaPredicted RBP5.45□□□□□ -1.54
LDLR-205ENST00000557933 LUZP6Q538Z0 58 aa5.45□□□□□ -1.54
LDLR-205ENST00000557933 UBR4Q5T4S7 5183 aa5.38□□□□□ -1.55
LDLR-205ENST00000557933 LCE2CQ5TA81 110 aa5.34□□□□□ -1.55
LDLR-205ENST00000557933 TNP1P09430 55 aa5.32□□□□□ -1.56
LDLR-205ENST00000557933 PP632Q6XCG6 107 aa5.3□□□□□ -1.56
LDLR-205ENST00000557933 M0R2T5 61 aa5.25□□□□□ -1.57
LDLR-205ENST00000557933 MT1HP80294 61 aa5.21□□□□□ -1.57
LDLR-205ENST00000557933 LCE3AQ5TA76 89 aa5.15□□□□□ -1.58
LDLR-205ENST00000557933 USH2AO75445 5202 aa5.13□□□□□ -1.59
LDLR-205ENST00000557933 KRTAP19-1Q8IUB9 90 aa5.12□□□□□ -1.59
LDLR-205ENST00000557933 KMT2DO14686 5537 aa5.11□□□□□ -1.59
LDLR-205ENST00000557933 LCE2AQ5TA79 106 aaPredicted RBP5.09□□□□□ -1.59
LDLR-205ENST00000557933 KRTAP10-10P60014 251 aa5.08□□□□□ -1.6
LDLR-205ENST00000557933 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
LDLR-205ENST00000557933 SPRR5A0A1B0GTR4 108 aa5.03□□□□□ -1.6
LDLR-205ENST00000557933 MT1FP04733 61 aa5.03□□□□□ -1.6
LDLR-205ENST00000557933 SPRR2GQ9BYE4 73 aa5□□□□□ -1.61
LDLR-205ENST00000557933 MT2AP02795 61 aa5□□□□□ -1.61
LDLR-205ENST00000557933 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.63
LDLR-205ENST00000557933 KRTAP9-3Q9BYQ3 159 aa4.87□□□□□ -1.63
LDLR-205ENST00000557933 KRTAP19-8Q3LI54 63 aa4.86□□□□□ -1.63
LDLR-205ENST00000557933 KRTAP10-5P60370 271 aa4.85□□□□□ -1.63
LDLR-205ENST00000557933 KRTAP10-7P60409 375 aaPredicted RBP4.85□□□□□ -1.63
LDLR-205ENST00000557933 MT1XP80297 61 aa4.84□□□□□ -1.63
LDLR-205ENST00000557933 MT1BP07438 61 aa4.82□□□□□ -1.64
LDLR-205ENST00000557933 KRTAP12-3P60328 96 aa4.82□□□□□ -1.64
LDLR-205ENST00000557933 KRTAP10-12P60413 245 aa4.81□□□□□ -1.64
LDLR-205ENST00000557933 FSIP2Q5CZC0 6907 aa4.8□□□□□ -1.64
LDLR-205ENST00000557933 KRTAP8-1Q8IUC2 63 aa4.79□□□□□ -1.64
LDLR-205ENST00000557933 LCE2DQ5TA82 110 aaPredicted RBP4.71□□□□□ -1.66
LDLR-205ENST00000557933 LCE2BO14633 110 aa4.68□□□□□ -1.66
LDLR-205ENST00000557933 PRO2289Q9P1D8 64 aa4.64□□□□□ -1.67
LDLR-205ENST00000557933 KRTAP4-8A0A0G2JLE6 195 aa4.64□□□□□ -1.67
LDLR-205ENST00000557933 KRTAP4-8Q9BYQ9 185 aa4.64□□□□□ -1.67
LDLR-205ENST00000557933 KRTAP19-5Q3LI72 72 aa4.63□□□□□ -1.67
LDLR-205ENST00000557933 KRTAP4-7Q9BYR0 210 aa4.58□□□□□ -1.68
LDLR-205ENST00000557933 KRTAP9-6A8MVA2 160 aa4.52□□□□□ -1.69
LDLR-205ENST00000557933 KRTAP19-6Q3LI70 58 aa4.51□□□□□ -1.69
LDLR-205ENST00000557933 DSTQ03001 7570 aaKnown RBP4.51□□□□□ -1.69
LDLR-205ENST00000557933 INE1O15225 51 aa4.5□□□□□ -1.69
LDLR-205ENST00000557933 LCE3CQ5T5A8 94 aa4.49□□□□□ -1.69
LDLR-205ENST00000557933 SSPOA2VEC9 5147 aa4.42□□□□□ -1.7
LDLR-205ENST00000557933 MUC12Q9UKN1 5478 aa4.41□□□□□ -1.7
LDLR-205ENST00000557933 FCGBPQ9Y6R7 5405 aaPredicted RBP4.4□□□□□ -1.7
LDLR-205ENST00000557933 KRTAP9-2Q9BYQ4 174 aa4.39□□□□□ -1.71
LDLR-205ENST00000557933 SYNE1Q8NF91 8797 aaKnown RBP4.31□□□□□ -1.72
LDLR-205ENST00000557933 KRTAP19-7Q3SYF9 63 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms