RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 K7ERS5 55 aa8.66□□□□□ -1.02
SHMT2-232ENST00000557487 KRTAP25-1Q3LHN0 102 aa8.64□□□□□ -1.03
SHMT2-232ENST00000557487 KRTAP10-4P60372 401 aaPredicted RBP8.62□□□□□ -1.03
SHMT2-232ENST00000557487 ABCA13Q86UQ4 5058 aa8.61□□□□□ -1.03
SHMT2-232ENST00000557487 FAT1Q14517 4588 aa8.61□□□□□ -1.03
SHMT2-232ENST00000557487 PCLOQ9Y6V0 5065 aa8.59□□□□□ -1.03
SHMT2-232ENST00000557487 PKHD1L1Q86WI1 4243 aa8.56□□□□□ -1.04
SHMT2-232ENST00000557487 ROMO1P60602 79 aa8.43□□□□□ -1.06
SHMT2-232ENST00000557487 RPL37P61927 97 aaKnown RBP8.42□□□□□ -1.06
SHMT2-232ENST00000557487 KRTAP10-6P60371 365 aaPredicted RBP8.4□□□□□ -1.06
SHMT2-232ENST00000557487 FLG2Q5D862 2391 aaPredicted RBP8.4□□□□□ -1.07
SHMT2-232ENST00000557487 KRTAP3-3Q9BYR6 98 aa8.39□□□□□ -1.07
SHMT2-232ENST00000557487 MYCBP2O75592 4640 aa8.35□□□□□ -1.07
SHMT2-232ENST00000557487 J3QL48 77 aa8.34□□□□□ -1.07
SHMT2-232ENST00000557487 S4R3F8 94 aa8.34□□□□□ -1.07
SHMT2-232ENST00000557487 KRTAP10-8P60410 259 aa8.33□□□□□ -1.08
SHMT2-232ENST00000557487 KRTAP3-2Q9BYR7 98 aa8.32□□□□□ -1.08
SHMT2-232ENST00000557487 H3BS24 57 aa8.3□□□□□ -1.08
SHMT2-232ENST00000557487 MT1HL1P0DM35 61 aa8.3□□□□□ -1.08
SHMT2-232ENST00000557487 FAT3Q8TDW7 4589 aa8.3□□□□□ -1.08
SHMT2-232ENST00000557487 LRP1Q07954 4544 aaKnown RBP8.28□□□□□ -1.08
SHMT2-232ENST00000557487 KRTAP13-4Q3LI77 160 aa8.27□□□□□ -1.09
SHMT2-232ENST00000557487 XP32Q5T750 250 aa8.26□□□□□ -1.09
SHMT2-232ENST00000557487 DMBT1Q9UGM3 2413 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-232ENST00000557487 CRIPTQ9P021 101 aa8.22□□□□□ -1.09
SHMT2-232ENST00000557487 A0A0D9SG42 100 aa8.21□□□□□ -1.09
SHMT2-232ENST00000557487 HERC1Q15751 4861 aa8.17□□□□□ -1.1
SHMT2-232ENST00000557487 TNXBP22105 4242 aa8.15□□□□□ -1.1
SHMT2-232ENST00000557487 P0C880 135 aa8.14□□□□□ -1.11
SHMT2-232ENST00000557487 TPRXLQ17RH7 258 aa8.12□□□□□ -1.11
SHMT2-232ENST00000557487 M0QZ58 72 aa8.07□□□□□ -1.12
SHMT2-232ENST00000557487 KRTAP12-2P59991 146 aa8.05□□□□□ -1.12
SHMT2-232ENST00000557487 SPINT4Q6UDR6 99 aa8.04□□□□□ -1.12
SHMT2-232ENST00000557487 KRTAP12-1P59990 96 aa8.03□□□□□ -1.12
SHMT2-232ENST00000557487 HMCN2Q8NDA2 5059 aa7.99□□□□□ -1.13
SHMT2-232ENST00000557487 C10orf95Q9H7T3 257 aa7.96□□□□□ -1.13
SHMT2-232ENST00000557487 KRTAP15-1Q3LI76 137 aa7.9□□□□□ -1.15
SHMT2-232ENST00000557487 LRP2P98164 4655 aa7.74□□□□□ -1.17
SHMT2-232ENST00000557487 R4GN34 69 aa7.74□□□□□ -1.17
SHMT2-232ENST00000557487 UBR4Q5T4S7 5183 aa7.72□□□□□ -1.17
SHMT2-232ENST00000557487 NDUFAF8A1L188 74 aa7.7□□□□□ -1.18
SHMT2-232ENST00000557487 LPAP08519 4548 aa7.69□□□□□ -1.18
SHMT2-232ENST00000557487 SEC61BP60468 96 aaKnown RBP7.66□□□□□ -1.18
SHMT2-232ENST00000557487 RNF213Q63HN8 5207 aa7.52□□□□□ -1.21
SHMT2-232ENST00000557487 PP632Q6XCG6 107 aa7.51□□□□□ -1.21
SHMT2-232ENST00000557487 MUC17Q685J3 4493 aa7.49□□□□□ -1.21
SHMT2-232ENST00000557487 PLAC4Q8WY50 150 aa7.48□□□□□ -1.21
SHMT2-232ENST00000557487 LORP23490 312 aaPredicted RBP7.45□□□□□ -1.22
SHMT2-232ENST00000557487 CAMK2N1Q7Z7J9 78 aa7.37□□□□□ -1.23
SHMT2-232ENST00000557487 KRTAP4-1Q9BYQ7 146 aa7.37□□□□□ -1.23
SHMT2-232ENST00000557487 MUC2Q02817 5179 aa7.36□□□□□ -1.23
SHMT2-232ENST00000557487 KRTAP19-2Q3LHN2 52 aa7.35□□□□□ -1.23
SHMT2-232ENST00000557487 KRTAP23-1A1A580 65 aa7.27□□□□□ -1.25
SHMT2-232ENST00000557487 LUZP6Q538Z0 58 aa7.24□□□□□ -1.25
SHMT2-232ENST00000557487 LCE2AQ5TA79 106 aaPredicted RBP7.21□□□□□ -1.25
SHMT2-232ENST00000557487 FAT4Q6V0I7 4981 aa7.2□□□□□ -1.26
SHMT2-232ENST00000557487 TNP1P09430 55 aa7.17□□□□□ -1.26
SHMT2-232ENST00000557487 LCE2CQ5TA81 110 aa7.14□□□□□ -1.27
SHMT2-232ENST00000557487 A0A0A0MQY5 61 aa7.03□□□□□ -1.28
SHMT2-232ENST00000557487 MT1HP80294 61 aa7.03□□□□□ -1.28
SHMT2-232ENST00000557487 FLGP20930 4061 aaPredicted RBP7.03□□□□□ -1.28
SHMT2-232ENST00000557487 SPRR5A0A1B0GTR4 108 aa7□□□□□ -1.29
SHMT2-232ENST00000557487 LCE2DQ5TA82 110 aaPredicted RBP6.95□□□□□ -1.3
SHMT2-232ENST00000557487 SPRR2GQ9BYE4 73 aa6.92□□□□□ -1.3
SHMT2-232ENST00000557487 M0R2T5 61 aa6.87□□□□□ -1.31
SHMT2-232ENST00000557487 KRTAP9-2Q9BYQ4 174 aa6.81□□□□□ -1.32
SHMT2-232ENST00000557487 KRTAP19-1Q8IUB9 90 aa6.79□□□□□ -1.32
SHMT2-232ENST00000557487 KRTAP9-8Q9BYQ0 159 aa6.7□□□□□ -1.34
SHMT2-232ENST00000557487 LCE3AQ5TA76 89 aa6.66□□□□□ -1.34
SHMT2-232ENST00000557487 KRTAP8-1Q8IUC2 63 aa6.61□□□□□ -1.35
SHMT2-232ENST00000557487 MT2AP02795 61 aa6.6□□□□□ -1.35
SHMT2-232ENST00000557487 KRTAP19-8Q3LI54 63 aa6.6□□□□□ -1.35
SHMT2-232ENST00000557487 KRTAP10-10P60014 251 aa6.57□□□□□ -1.36
SHMT2-232ENST00000557487 MT1FP04733 61 aa6.55□□□□□ -1.36
SHMT2-232ENST00000557487 KRTAP9-6A0A140TA67 174 aa6.51□□□□□ -1.37
SHMT2-232ENST00000557487 KRTAP9-3Q9BYQ3 159 aa6.48□□□□□ -1.37
SHMT2-232ENST00000557487 CRCT1Q9UGL9 99 aa6.47□□□□□ -1.37
SHMT2-232ENST00000557487 KRTAP10-5P60370 271 aa6.43□□□□□ -1.38
SHMT2-232ENST00000557487 MT1BP07438 61 aa6.41□□□□□ -1.38
SHMT2-232ENST00000557487 MT1XP80297 61 aa6.41□□□□□ -1.38
SHMT2-232ENST00000557487 LCE2BO14633 110 aa6.39□□□□□ -1.39
SHMT2-232ENST00000557487 INE1O15225 51 aa6.39□□□□□ -1.39
SHMT2-232ENST00000557487 KRTAP12-3P60328 96 aa6.39□□□□□ -1.39
SHMT2-232ENST00000557487 KRTAP10-12P60413 245 aa6.39□□□□□ -1.39
SHMT2-232ENST00000557487 FSIP2Q5CZC0 6907 aa6.38□□□□□ -1.39
SHMT2-232ENST00000557487 PRO2289Q9P1D8 64 aa6.37□□□□□ -1.39
SHMT2-232ENST00000557487 USH2AO75445 5202 aa6.32□□□□□ -1.4
SHMT2-232ENST00000557487 SSPOA2VEC9 5147 aa6.22□□□□□ -1.41
SHMT2-232ENST00000557487 KRTAP10-7P60409 375 aaPredicted RBP6.19□□□□□ -1.42
SHMT2-232ENST00000557487 KRTAP19-6Q3LI70 58 aa6.16□□□□□ -1.42
SHMT2-232ENST00000557487 FCGBPQ9Y6R7 5405 aaPredicted RBP6.05□□□□□ -1.44
SHMT2-232ENST00000557487 LCE3CQ5T5A8 94 aa6.03□□□□□ -1.44
SHMT2-232ENST00000557487 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.02□□□□□ -1.45
SHMT2-232ENST00000557487 KRTAP19-5Q3LI72 72 aa6.01□□□□□ -1.45
SHMT2-232ENST00000557487 KRTAP19-4Q3LI73 84 aa5.93□□□□□ -1.46
SHMT2-232ENST00000557487 KRTAP9-7A8MTY7 169 aa5.87□□□□□ -1.47
SHMT2-232ENST00000557487 MACF1Q9UPN3 7388 aaKnown RBP5.81□□□□□ -1.48
SHMT2-232ENST00000557487 KRTAP2-3P0C7H8 128 aa5.73□□□□□ -1.49
SHMT2-232ENST00000557487 KRTAP2-4Q9BYR9 128 aa5.73□□□□□ -1.49
SHMT2-232ENST00000557487 KRTAP2-1Q9BYU5 128 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 159.7 ms