RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 KRTAP19-8Q3LI54 63 aa5.34□□□□□ -1.55
VRK1-204ENST00000555351 HIST1H4AP62805 103 aaKnown RBP5.33□□□□□ -1.56
VRK1-204ENST00000555351 Q5VV11 94 aa5.32□□□□□ -1.56
VRK1-204ENST00000555351 LINC00643Q86TS7 51 aa5.32□□□□□ -1.56
VRK1-204ENST00000555351 KRTAP4-8Q9BYQ9 185 aa5.32□□□□□ -1.56
VRK1-204ENST00000555351 CRIPTQ9P021 101 aa5.32□□□□□ -1.56
VRK1-204ENST00000555351 MT1BP07438 61 aa5.31□□□□□ -1.56
VRK1-204ENST00000555351 SYNE2Q8WXH0 6885 aaKnown RBP5.3□□□□□ -1.56
VRK1-204ENST00000555351 H0Y9P7 68 aa5.3□□□□□ -1.56
VRK1-204ENST00000555351 KRTAP6-3Q3LI67 103 aa5.3□□□□□ -1.56
VRK1-204ENST00000555351 A8MUN3 132 aa5.29□□□□□ -1.56
VRK1-204ENST00000555351 IMUPQ9GZP8 106 aa5.29□□□□□ -1.56
VRK1-204ENST00000555351 KRTAP4-12Q9BQ66 201 aa5.28□□□□□ -1.56
VRK1-204ENST00000555351 H0YAA0 97 aa5.27□□□□□ -1.57
VRK1-204ENST00000555351 A0A087WVE0 104 aa5.26□□□□□ -1.57
VRK1-204ENST00000555351 A6NN06 94 aa5.26□□□□□ -1.57
VRK1-204ENST00000555351 NDUFC1O43677 76 aa5.26□□□□□ -1.57
VRK1-204ENST00000555351 KRTAP19-4Q3LI73 84 aa5.26□□□□□ -1.57
VRK1-204ENST00000555351 KRTAP10-5P60370 271 aa5.22□□□□□ -1.57
VRK1-204ENST00000555351 OCR1Q9BZK8 76 aa5.22□□□□□ -1.57
VRK1-204ENST00000555351 MP68P56378 58 aa5.21□□□□□ -1.58
VRK1-204ENST00000555351 LINC00208Q96KT6 92 aa5.21□□□□□ -1.58
VRK1-204ENST00000555351 SVIPQ8NHG7 77 aa5.2□□□□□ -1.58
VRK1-204ENST00000555351 H3BPC8 53 aa5.18□□□□□ -1.58
VRK1-204ENST00000555351 J3QR89 54 aa5.17□□□□□ -1.58
VRK1-204ENST00000555351 A0A1B0GV90 55 aa5.16□□□□□ -1.58
VRK1-204ENST00000555351 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.59
VRK1-204ENST00000555351 ADM2Q7Z4H4 148 aa5.12□□□□□ -1.59
VRK1-204ENST00000555351 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
VRK1-204ENST00000555351 DMAC1Q96GE9 116 aa5.09□□□□□ -1.59
VRK1-204ENST00000555351 SCGB1A1P11684 91 aa5.08□□□□□ -1.6
VRK1-204ENST00000555351 LCE3BQ5TA77 95 aa5.08□□□□□ -1.6
VRK1-204ENST00000555351 C20orf197Q8N268 126 aa5.08□□□□□ -1.6
VRK1-204ENST00000555351 KRTAP5-9P26371 169 aa5.06□□□□□ -1.6
VRK1-204ENST00000555351 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
VRK1-204ENST00000555351 PCP4P48539 62 aa5.03□□□□□ -1.6
VRK1-204ENST00000555351 R4GN34 69 aa5.02□□□□□ -1.61
VRK1-204ENST00000555351 TRAV7A0A075B6U4 112 aa5.01□□□□□ -1.61
VRK1-204ENST00000555351 PLAC4Q8WY50 150 aa5.01□□□□□ -1.61
VRK1-204ENST00000555351 SMIM20Q8N5G0 67 aa5□□□□□ -1.61
VRK1-204ENST00000555351 NEBP20929 6669 aa4.99□□□□□ -1.61
VRK1-204ENST00000555351 P0C880 135 aa4.99□□□□□ -1.61
VRK1-204ENST00000555351 KRTAP9-9Q9BYP9 154 aa4.98□□□□□ -1.61
VRK1-204ENST00000555351 KRTAP9-4Q9BYQ2 154 aa4.98□□□□□ -1.61
VRK1-204ENST00000555351 MT1XP80297 61 aa4.97□□□□□ -1.61
VRK1-204ENST00000555351 MUC12Q9UKN1 5478 aa4.96□□□□□ -1.61
VRK1-204ENST00000555351 ACYP2P14621 99 aa4.96□□□□□ -1.62
VRK1-204ENST00000555351 K7ERU9 68 aa4.95□□□□□ -1.62
VRK1-204ENST00000555351 M0QZ58 72 aa4.95□□□□□ -1.62
VRK1-204ENST00000555351 SPTSSBQ8NFR3 76 aa4.94□□□□□ -1.62
VRK1-204ENST00000555351 KRTAP12-2P59991 146 aa4.92□□□□□ -1.62
VRK1-204ENST00000555351 MT-ATP8P03928 68 aa4.91□□□□□ -1.62
VRK1-204ENST00000555351 KMT2DO14686 5537 aa4.89□□□□□ -1.63
VRK1-204ENST00000555351 KRTAP20-1Q3LI63 56 aa4.89□□□□□ -1.63
VRK1-204ENST00000555351 LINC01554Q52M75 96 aa4.85□□□□□ -1.63
VRK1-204ENST00000555351 SPANXA2-OT1Q8N9U9 137 aa4.84□□□□□ -1.63
VRK1-204ENST00000555351 SPRR2FQ96RM1 72 aa4.84□□□□□ -1.63
VRK1-204ENST00000555351 CHKB-CPT1BH3BT56 60 aa4.83□□□□□ -1.64
VRK1-204ENST00000555351 KRTAP8-1Q8IUC2 63 aa4.83□□□□□ -1.64
VRK1-204ENST00000555351 MDN1Q9NU22 5596 aa4.82□□□□□ -1.64
VRK1-204ENST00000555351 KRTAP4-8A0A0G2JLE6 195 aa4.8□□□□□ -1.64
VRK1-204ENST00000555351 SNURFQ9Y675 71 aa4.79□□□□□ -1.64
VRK1-204ENST00000555351 KRTAP2-3P0C7H8 128 aa4.78□□□□□ -1.64
VRK1-204ENST00000555351 SPRR2EP22531 72 aa4.78□□□□□ -1.64
VRK1-204ENST00000555351 SPRR2BP35325 72 aa4.78□□□□□ -1.64
VRK1-204ENST00000555351 SPRR2AP35326 72 aa4.78□□□□□ -1.64
VRK1-204ENST00000555351 SERP2Q8N6R1 65 aa4.78□□□□□ -1.64
VRK1-204ENST00000555351 KRTAP2-4Q9BYR9 128 aa4.78□□□□□ -1.64
VRK1-204ENST00000555351 LCE1DQ5T752 114 aa4.77□□□□□ -1.65
VRK1-204ENST00000555351 KRTAP10-12P60413 245 aa4.75□□□□□ -1.65
VRK1-204ENST00000555351 LCE1AQ5T7P2 110 aa4.73□□□□□ -1.65
VRK1-204ENST00000555351 KRTAP10-7P60409 375 aaPredicted RBP4.72□□□□□ -1.65
VRK1-204ENST00000555351 LCE5AQ5TCM9 118 aa4.67□□□□□ -1.66
VRK1-204ENST00000555351 KRTAP15-1Q3LI76 137 aa4.66□□□□□ -1.66
VRK1-204ENST00000555351 KRTAP13-4Q3LI77 160 aa4.65□□□□□ -1.67
VRK1-204ENST00000555351 COA5Q86WW8 74 aa4.64□□□□□ -1.67
VRK1-204ENST00000555351 KRTAP2-2Q9BYT5 123 aa4.63□□□□□ -1.67
VRK1-204ENST00000555351 KRTAP2-1Q9BYU5 128 aa4.63□□□□□ -1.67
VRK1-204ENST00000555351 SPRR2DP22532 72 aa4.62□□□□□ -1.67
VRK1-204ENST00000555351 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
VRK1-204ENST00000555351 COX7CP15954 63 aa4.61□□□□□ -1.67
VRK1-204ENST00000555351 SEC61GP60059 68 aa4.61□□□□□ -1.67
VRK1-204ENST00000555351 CAMK2N1Q7Z7J9 78 aa4.6□□□□□ -1.67
VRK1-204ENST00000555351 KRTAP4-9Q9BYQ8 210 aa4.59□□□□□ -1.67
VRK1-204ENST00000555351 SERP1Q9Y6X1 66 aa4.59□□□□□ -1.67
VRK1-204ENST00000555351 H7BZZ5 65 aa4.55□□□□□ -1.68
VRK1-204ENST00000555351 A0A0A0MQY5 61 aa4.53□□□□□ -1.68
VRK1-204ENST00000555351 ANAPC13Q9BS18 74 aa4.53□□□□□ -1.68
VRK1-204ENST00000555351 A0A1B0GU33 70 aa4.52□□□□□ -1.69
VRK1-204ENST00000555351 KRTAP4-11Q9BYQ6 195 aa4.49□□□□□ -1.69
VRK1-204ENST00000555351 A0A0D9SG42 100 aa4.47□□□□□ -1.69
VRK1-204ENST00000555351 RPS28P62857 69 aaKnown RBP4.47□□□□□ -1.69
VRK1-204ENST00000555351 SPATA8Q6RVD6 105 aa4.47□□□□□ -1.69
VRK1-204ENST00000555351 CYSTM1Q9H1C7 97 aa4.47□□□□□ -1.69
VRK1-204ENST00000555351 KRTAP19-7Q3SYF9 63 aa4.45□□□□□ -1.7
VRK1-204ENST00000555351 KRTAP12-1P59990 96 aa4.44□□□□□ -1.7
VRK1-204ENST00000555351 SPINT4Q6UDR6 99 aa4.43□□□□□ -1.7
VRK1-204ENST00000555351 KRTAP4-2Q9BYR5 136 aa4.43□□□□□ -1.7
VRK1-204ENST00000555351 SMIM26A0A096LP01 95 aa4.42□□□□□ -1.7
VRK1-204ENST00000555351 A0A1B0GU69 56 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms