RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 C9orf92A6NGG3 77 aa6.61□□□□□ -1.35
SHMT2-207ENST00000553837 SPINT4Q6UDR6 99 aa6.59□□□□□ -1.35
SHMT2-207ENST00000553837 NDUFAF8A1L188 74 aa6.57□□□□□ -1.36
SHMT2-207ENST00000553837 LRP1Q07954 4544 aaKnown RBP6.56□□□□□ -1.36
SHMT2-207ENST00000553837 TNXBP22105 4242 aa6.53□□□□□ -1.36
SHMT2-207ENST00000553837 FLG2Q5D862 2391 aaPredicted RBP6.53□□□□□ -1.36
SHMT2-207ENST00000553837 KRTAP15-1Q3LI76 137 aa6.52□□□□□ -1.36
SHMT2-207ENST00000553837 HSPG2P98160 4391 aa6.52□□□□□ -1.37
SHMT2-207ENST00000553837 CRIPTQ9P021 101 aa6.52□□□□□ -1.37
SHMT2-207ENST00000553837 FAT3Q8TDW7 4589 aa6.51□□□□□ -1.37
SHMT2-207ENST00000553837 KRTAP3-1Q9BYR8 98 aa6.5□□□□□ -1.37
SHMT2-207ENST00000553837 KRTAP17-1Q9BYP8 105 aa6.48□□□□□ -1.37
SHMT2-207ENST00000553837 COX6B2Q6YFQ2 88 aa6.46□□□□□ -1.38
SHMT2-207ENST00000553837 HERC2O95714 4834 aa6.46□□□□□ -1.38
SHMT2-207ENST00000553837 RYR1P21817 5038 aa6.44□□□□□ -1.38
SHMT2-207ENST00000553837 KRTAP10-8P60410 259 aa6.44□□□□□ -1.38
SHMT2-207ENST00000553837 Q5VSD8 79 aa6.42□□□□□ -1.38
SHMT2-207ENST00000553837 KIAA1109Q2LD37 5005 aa6.42□□□□□ -1.38
SHMT2-207ENST00000553837 RPL37P61927 97 aaKnown RBP6.39□□□□□ -1.39
SHMT2-207ENST00000553837 TPRXLQ17RH7 258 aa6.38□□□□□ -1.39
SHMT2-207ENST00000553837 LUZP6Q538Z0 58 aa6.35□□□□□ -1.39
SHMT2-207ENST00000553837 MYCBP2O75592 4640 aa6.35□□□□□ -1.39
SHMT2-207ENST00000553837 DMBT1Q9UGM3 2413 aaPredicted RBP6.34□□□□□ -1.39
SHMT2-207ENST00000553837 MT1HL1P0DM35 61 aa6.29□□□□□ -1.4
SHMT2-207ENST00000553837 XP32Q5T750 250 aa6.28□□□□□ -1.4
SHMT2-207ENST00000553837 KRTAP10-6P60371 365 aaPredicted RBP6.27□□□□□ -1.41
SHMT2-207ENST00000553837 A0A0D9SG42 100 aa6.27□□□□□ -1.41
SHMT2-207ENST00000553837 ABCA13Q86UQ4 5058 aa6.26□□□□□ -1.41
SHMT2-207ENST00000553837 KRTAP4-5Q9BYR2 181 aa6.25□□□□□ -1.41
SHMT2-207ENST00000553837 KRTAP13-4Q3LI77 160 aa6.24□□□□□ -1.41
SHMT2-207ENST00000553837 PCLOQ9Y6V0 5065 aa6.24□□□□□ -1.41
SHMT2-207ENST00000553837 C10orf95Q9H7T3 257 aa6.22□□□□□ -1.41
SHMT2-207ENST00000553837 KRTAP3-3Q9BYR6 98 aa6.2□□□□□ -1.42
SHMT2-207ENST00000553837 KRTAP3-2Q9BYR7 98 aa6.2□□□□□ -1.42
SHMT2-207ENST00000553837 LPAP08519 4548 aa6.18□□□□□ -1.42
SHMT2-207ENST00000553837 S4R3F8 94 aa6.16□□□□□ -1.42
SHMT2-207ENST00000553837 SEC61BP60468 96 aaKnown RBP6.16□□□□□ -1.42
SHMT2-207ENST00000553837 LRP2P98164 4655 aa6.14□□□□□ -1.43
SHMT2-207ENST00000553837 KRTAP12-2P59991 146 aa6.1□□□□□ -1.43
SHMT2-207ENST00000553837 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
SHMT2-207ENST00000553837 J3QL48 77 aa5.98□□□□□ -1.45
SHMT2-207ENST00000553837 M0QZ58 72 aa5.96□□□□□ -1.46
SHMT2-207ENST00000553837 HERC1Q15751 4861 aa5.95□□□□□ -1.46
SHMT2-207ENST00000553837 PLAC4Q8WY50 150 aa5.91□□□□□ -1.46
SHMT2-207ENST00000553837 MUC17Q685J3 4493 aa5.89□□□□□ -1.47
SHMT2-207ENST00000553837 KRTAP4-1Q9BYQ7 146 aa5.86□□□□□ -1.47
SHMT2-207ENST00000553837 CAMK2N1Q7Z7J9 78 aa5.82□□□□□ -1.48
SHMT2-207ENST00000553837 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
SHMT2-207ENST00000553837 KRTAP19-2Q3LHN2 52 aa5.74□□□□□ -1.49
SHMT2-207ENST00000553837 R4GN34 69 aa5.7□□□□□ -1.5
SHMT2-207ENST00000553837 MUC2Q02817 5179 aa5.7□□□□□ -1.5
SHMT2-207ENST00000553837 LORP23490 312 aaPredicted RBP5.69□□□□□ -1.5
SHMT2-207ENST00000553837 PP632Q6XCG6 107 aa5.65□□□□□ -1.51
SHMT2-207ENST00000553837 PRO2289Q9P1D8 64 aa5.6□□□□□ -1.51
SHMT2-207ENST00000553837 FLGP20930 4061 aaPredicted RBP5.58□□□□□ -1.52
SHMT2-207ENST00000553837 UBR4Q5T4S7 5183 aa5.58□□□□□ -1.52
SHMT2-207ENST00000553837 RNF213Q63HN8 5207 aa5.47□□□□□ -1.53
SHMT2-207ENST00000553837 SPRR5A0A1B0GTR4 108 aa5.46□□□□□ -1.54
SHMT2-207ENST00000553837 LCE2CQ5TA81 110 aa5.43□□□□□ -1.54
SHMT2-207ENST00000553837 FAT4Q6V0I7 4981 aa5.42□□□□□ -1.54
SHMT2-207ENST00000553837 INE1O15225 51 aa5.42□□□□□ -1.54
SHMT2-207ENST00000553837 KRTAP23-1A1A580 65 aa5.36□□□□□ -1.55
SHMT2-207ENST00000553837 TNP1P09430 55 aa5.32□□□□□ -1.56
SHMT2-207ENST00000553837 LCE2DQ5TA82 110 aaPredicted RBP5.27□□□□□ -1.57
SHMT2-207ENST00000553837 MT1HP80294 61 aa5.26□□□□□ -1.57
SHMT2-207ENST00000553837 KRTAP19-1Q8IUB9 90 aa5.22□□□□□ -1.57
SHMT2-207ENST00000553837 SPRR2GQ9BYE4 73 aa5.2□□□□□ -1.58
SHMT2-207ENST00000553837 M0R2T5 61 aa5.19□□□□□ -1.58
SHMT2-207ENST00000553837 LCE2AQ5TA79 106 aaPredicted RBP5.17□□□□□ -1.58
SHMT2-207ENST00000553837 MT1FP04733 61 aa5.16□□□□□ -1.58
SHMT2-207ENST00000553837 MT2AP02795 61 aa5.16□□□□□ -1.58
SHMT2-207ENST00000553837 KRTAP9-8Q9BYQ0 159 aa5.14□□□□□ -1.59
SHMT2-207ENST00000553837 KRTAP10-10P60014 251 aa5.1□□□□□ -1.59
SHMT2-207ENST00000553837 KRTAP19-8Q3LI54 63 aa4.99□□□□□ -1.61
SHMT2-207ENST00000553837 MT1BP07438 61 aa4.97□□□□□ -1.61
SHMT2-207ENST00000553837 KRTAP9-2Q9BYQ4 174 aa4.95□□□□□ -1.62
SHMT2-207ENST00000553837 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
SHMT2-207ENST00000553837 KRTAP9-3Q9BYQ3 159 aa4.92□□□□□ -1.62
SHMT2-207ENST00000553837 KRTAP10-5P60370 271 aa4.91□□□□□ -1.62
SHMT2-207ENST00000553837 MT1XP80297 61 aa4.91□□□□□ -1.62
SHMT2-207ENST00000553837 KRTAP8-1Q8IUC2 63 aa4.85□□□□□ -1.63
SHMT2-207ENST00000553837 KRTAP9-6A0A140TA67 174 aa4.84□□□□□ -1.64
SHMT2-207ENST00000553837 FSIP2Q5CZC0 6907 aa4.81□□□□□ -1.64
SHMT2-207ENST00000553837 KRTAP10-7P60409 375 aaPredicted RBP4.77□□□□□ -1.65
SHMT2-207ENST00000553837 LCE2BO14633 110 aa4.77□□□□□ -1.65
SHMT2-207ENST00000553837 KRTAP10-12P60413 245 aa4.72□□□□□ -1.65
SHMT2-207ENST00000553837 KRTAP12-3P60328 96 aa4.71□□□□□ -1.65
SHMT2-207ENST00000553837 USH2AO75445 5202 aa4.71□□□□□ -1.66
SHMT2-207ENST00000553837 CRCT1Q9UGL9 99 aa4.7□□□□□ -1.66
SHMT2-207ENST00000553837 KMT2DO14686 5537 aa4.58□□□□□ -1.68
SHMT2-207ENST00000553837 KRTAP19-5Q3LI72 72 aa4.53□□□□□ -1.68
SHMT2-207ENST00000553837 KRTAP4-8A0A0G2JLE6 195 aa4.52□□□□□ -1.69
SHMT2-207ENST00000553837 KRTAP4-8Q9BYQ9 185 aa4.52□□□□□ -1.69
SHMT2-207ENST00000553837 SSPOA2VEC9 5147 aa4.5□□□□□ -1.69
SHMT2-207ENST00000553837 LCE3CQ5T5A8 94 aa4.47□□□□□ -1.69
SHMT2-207ENST00000553837 KRTAP19-6Q3LI70 58 aa4.41□□□□□ -1.7
SHMT2-207ENST00000553837 FCGBPQ9Y6R7 5405 aaPredicted RBP4.38□□□□□ -1.71
SHMT2-207ENST00000553837 KRTAP19-7Q3SYF9 63 aa4.38□□□□□ -1.71
SHMT2-207ENST00000553837 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.36□□□□□ -1.71
SHMT2-207ENST00000553837 KRTAP9-7A8MTY7 169 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 703.9 ms