RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 FSIP2Q5CZC0 6907 aa9.6□□□□□ -0.87
HMGA2-211ENST00000545998 KRTAP9-3Q9BYQ3 159 aa9.6□□□□□ -0.87
HMGA2-211ENST00000545998 DMAC1Q96GE9 116 aa9.57□□□□□ -0.88
HMGA2-211ENST00000545998 SNURFQ9Y675 71 aa9.56□□□□□ -0.88
HMGA2-211ENST00000545998 C20orf197Q8N268 126 aa9.53□□□□□ -0.88
HMGA2-211ENST00000545998 NDUFC1O43677 76 aa9.52□□□□□ -0.89
HMGA2-211ENST00000545998 USH2AO75445 5202 aa9.49□□□□□ -0.89
HMGA2-211ENST00000545998 LCE2BO14633 110 aa9.46□□□□□ -0.89
HMGA2-211ENST00000545998 COX7CP15954 63 aa9.45□□□□□ -0.9
HMGA2-211ENST00000545998 KRTAP9-6A0A140TA67 174 aa9.42□□□□□ -0.9
HMGA2-211ENST00000545998 CRCT1Q9UGL9 99 aa9.42□□□□□ -0.9
HMGA2-211ENST00000545998 ACYP2P14621 99 aa9.4□□□□□ -0.9
HMGA2-211ENST00000545998 SPANXA2-OT1Q8N9U9 137 aa9.38□□□□□ -0.91
HMGA2-211ENST00000545998 H0YAA0 97 aa9.36□□□□□ -0.91
HMGA2-211ENST00000545998 SSPOA2VEC9 5147 aa9.34□□□□□ -0.91
HMGA2-211ENST00000545998 ANAPC13Q9BS18 74 aa9.32□□□□□ -0.92
HMGA2-211ENST00000545998 KRTAP19-1Q8IUB9 90 aa9.29□□□□□ -0.92
HMGA2-211ENST00000545998 ADM2Q7Z4H4 148 aa9.25□□□□□ -0.93
HMGA2-211ENST00000545998 CYSTM1Q9H1C7 97 aa9.25□□□□□ -0.93
HMGA2-211ENST00000545998 SPRR2GQ9BYE4 73 aa9.24□□□□□ -0.93
HMGA2-211ENST00000545998 H7BZZ5 65 aa9.22□□□□□ -0.93
HMGA2-211ENST00000545998 CRIPTQ9P021 101 aa9.21□□□□□ -0.93
HMGA2-211ENST00000545998 CHKB-CPT1BH3BT56 60 aa9.2□□□□□ -0.94
HMGA2-211ENST00000545998 SPTSSBQ8NFR3 76 aa9.19□□□□□ -0.94
HMGA2-211ENST00000545998 CCDC179H3BU77 68 aa9.13□□□□□ -0.95
HMGA2-211ENST00000545998 KRTAP3-2Q9BYR7 98 aa9.12□□□□□ -0.95
HMGA2-211ENST00000545998 P0C880 135 aa9.12□□□□□ -0.95
HMGA2-211ENST00000545998 KRTAP19-8Q3LI54 63 aa9.12□□□□□ -0.95
HMGA2-211ENST00000545998 COA5Q86WW8 74 aa9.09□□□□□ -0.95
HMGA2-211ENST00000545998 MT1BP07438 61 aa9.06□□□□□ -0.96
HMGA2-211ENST00000545998 Q5VV11 94 aa9.06□□□□□ -0.96
HMGA2-211ENST00000545998 FCGBPQ9Y6R7 5405 aaPredicted RBP9.05□□□□□ -0.96
HMGA2-211ENST00000545998 KRTAP19-6Q3LI70 58 aa9.05□□□□□ -0.96
HMGA2-211ENST00000545998 R4GN34 69 aa8.99□□□□□ -0.97
HMGA2-211ENST00000545998 M0QZ58 72 aa8.93□□□□□ -0.98
HMGA2-211ENST00000545998 ATP5EP56381 51 aaPredicted RBP8.88□□□□□ -0.99
HMGA2-211ENST00000545998 TMEM258P61165 79 aa8.8□□□□□ -1
HMGA2-211ENST00000545998 A6NN06 94 aa8.77□□□□□ -1.01
HMGA2-211ENST00000545998 LINC01554Q52M75 96 aa8.77□□□□□ -1.01
HMGA2-211ENST00000545998 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.76□□□□□ -1.01
HMGA2-211ENST00000545998 KRTAP10-5P60370 271 aa8.76□□□□□ -1.01
HMGA2-211ENST00000545998 SEC61GP60059 68 aa8.75□□□□□ -1.01
HMGA2-211ENST00000545998 PLAC4Q8WY50 150 aa8.73□□□□□ -1.01
HMGA2-211ENST00000545998 SERP1Q9Y6X1 66 aa8.73□□□□□ -1.01
HMGA2-211ENST00000545998 MACF1Q9UPN3 7388 aaKnown RBP8.72□□□□□ -1.01
HMGA2-211ENST00000545998 KRTAP13-4Q3LI77 160 aa8.69□□□□□ -1.02
HMGA2-211ENST00000545998 A0A1B0GU69 56 aa8.6□□□□□ -1.03
HMGA2-211ENST00000545998 MT1XP80297 61 aa8.6□□□□□ -1.03
HMGA2-211ENST00000545998 A0A1B0GU33 70 aa8.59□□□□□ -1.03
HMGA2-211ENST00000545998 PRO2289Q9P1D8 64 aa8.56□□□□□ -1.04
HMGA2-211ENST00000545998 SYNE2Q8WXH0 6885 aaKnown RBP8.56□□□□□ -1.04
HMGA2-211ENST00000545998 KRTAP9-7A8MTY7 169 aa8.52□□□□□ -1.05
HMGA2-211ENST00000545998 SPATA8Q6RVD6 105 aa8.52□□□□□ -1.05
HMGA2-211ENST00000545998 LINC01558Q9Y6Z2 57 aa8.5□□□□□ -1.05
HMGA2-211ENST00000545998 PCP4P48539 62 aa8.47□□□□□ -1.05
HMGA2-211ENST00000545998 PRR15LQ9BU68 103 aa8.46□□□□□ -1.06
HMGA2-211ENST00000545998 A0A0D9SG42 100 aa8.44□□□□□ -1.06
HMGA2-211ENST00000545998 SMIM26A0A096LP01 95 aa8.33□□□□□ -1.08
HMGA2-211ENST00000545998 KRTAP6-3Q3LI67 103 aa8.32□□□□□ -1.08
HMGA2-211ENST00000545998 KMT2DO14686 5537 aa8.31□□□□□ -1.08
HMGA2-211ENST00000545998 KRTAP12-2P59991 146 aa8.31□□□□□ -1.08
HMGA2-211ENST00000545998 CAMK2N1Q7Z7J9 78 aa8.31□□□□□ -1.08
HMGA2-211ENST00000545998 KRTAP12-1P59990 96 aa8.3□□□□□ -1.08
HMGA2-211ENST00000545998 A8MU10 97 aa8.28□□□□□ -1.08
HMGA2-211ENST00000545998 SPINT4Q6UDR6 99 aa8.28□□□□□ -1.08
HMGA2-211ENST00000545998 V9GYY9 64 aa8.24□□□□□ -1.09
HMGA2-211ENST00000545998 Q1T7F1 81 aa8.22□□□□□ -1.09
HMGA2-211ENST00000545998 KRTAP10-7P60409 375 aaPredicted RBP8.21□□□□□ -1.1
HMGA2-211ENST00000545998 UQCR11O14957 56 aa8.2□□□□□ -1.1
HMGA2-211ENST00000545998 KRTAP10-12P60413 245 aa8.17□□□□□ -1.1
HMGA2-211ENST00000545998 RPS28P62857 69 aaKnown RBP8.17□□□□□ -1.1
HMGA2-211ENST00000545998 PSPHP1O15172 72 aa8.14□□□□□ -1.11
HMGA2-211ENST00000545998 KRTAP5-9P26371 169 aa8.13□□□□□ -1.11
HMGA2-211ENST00000545998 MUC12Q9UKN1 5478 aa8.13□□□□□ -1.11
HMGA2-211ENST00000545998 KRTAP4-8A0A0G2JLE6 195 aa8.08□□□□□ -1.12
HMGA2-211ENST00000545998 KRTAP4-8Q9BYQ9 185 aa8.08□□□□□ -1.12
HMGA2-211ENST00000545998 KRTAP8-1Q8IUC2 63 aa8.06□□□□□ -1.12
HMGA2-211ENST00000545998 MIR22HGQ0VDD5 57 aa8.05□□□□□ -1.12
HMGA2-211ENST00000545998 MDN1Q9NU22 5596 aa7.98□□□□□ -1.13
HMGA2-211ENST00000545998 NEBP20929 6669 aa7.98□□□□□ -1.13
HMGA2-211ENST00000545998 SPRR2FQ96RM1 72 aa7.97□□□□□ -1.13
HMGA2-211ENST00000545998 C10orf95Q9H7T3 257 aa7.91□□□□□ -1.14
HMGA2-211ENST00000545998 A6NED7 52 aa7.88□□□□□ -1.15
HMGA2-211ENST00000545998 K7ERS5 55 aa7.8□□□□□ -1.16
HMGA2-211ENST00000545998 TNP1P09430 55 aa7.77□□□□□ -1.17
HMGA2-211ENST00000545998 SPRR2EP22531 72 aa7.75□□□□□ -1.17
HMGA2-211ENST00000545998 SPRR2BP35325 72 aa7.75□□□□□ -1.17
HMGA2-211ENST00000545998 SPRR2AP35326 72 aa7.75□□□□□ -1.17
HMGA2-211ENST00000545998 LCE1AQ5T7P2 110 aa7.72□□□□□ -1.17
HMGA2-211ENST00000545998 SVIPQ8NHG7 77 aa7.69□□□□□ -1.18
HMGA2-211ENST00000545998 KRTAP19-7Q3SYF9 63 aa7.68□□□□□ -1.18
HMGA2-211ENST00000545998 LCE3AQ5TA76 89 aa7.62□□□□□ -1.19
HMGA2-211ENST00000545998 CDC42SE1Q9NRR8 79 aa7.62□□□□□ -1.19
HMGA2-211ENST00000545998 MT1EP04732 61 aa7.59□□□□□ -1.19
HMGA2-211ENST00000545998 KRTAP19-5Q3LI72 72 aa7.59□□□□□ -1.2
HMGA2-211ENST00000545998 KRTAP25-1Q3LHN0 102 aa7.55□□□□□ -1.2
HMGA2-211ENST00000545998 KRTAP20-1Q3LI63 56 aa7.5□□□□□ -1.21
HMGA2-211ENST00000545998 SPRR2DP22532 72 aa7.48□□□□□ -1.21
HMGA2-211ENST00000545998 KRTAP19-3Q7Z4W3 81 aa7.43□□□□□ -1.22
HMGA2-211ENST00000545998 KRTAP2-3P0C7H8 128 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 363.3 ms