RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 MT1HP80294 61 aa6.11□□□□□ -1.43
DDX55-210ENST00000543016 C1orf64Q8NEQ6 169 aa6.09□□□□□ -1.43
DDX55-210ENST00000543016 TRAV7A0A075B6U4 112 aa6.08□□□□□ -1.44
DDX55-210ENST00000543016 KRTAP4-2Q9BYR5 136 aa6.08□□□□□ -1.44
DDX55-210ENST00000543016 LINC00208Q96KT6 92 aa6.07□□□□□ -1.44
DDX55-210ENST00000543016 FLGP20930 4061 aaPredicted RBP6.07□□□□□ -1.44
DDX55-210ENST00000543016 M0R2T5 61 aa6.05□□□□□ -1.44
DDX55-210ENST00000543016 C4orf26Q17RF5 130 aa6.05□□□□□ -1.44
DDX55-210ENST00000543016 H1FX-AS1Q4G0G2 97 aa6.05□□□□□ -1.44
DDX55-210ENST00000543016 KRTAP9-3Q9BYQ3 159 aa6.05□□□□□ -1.44
DDX55-210ENST00000543016 LCE5AQ5TCM9 118 aa6.03□□□□□ -1.44
DDX55-210ENST00000543016 KRTAP4-11Q9BYQ6 195 aa6.02□□□□□ -1.45
DDX55-210ENST00000543016 SERP2Q8N6R1 65 aa5.99□□□□□ -1.45
DDX55-210ENST00000543016 A8MUN3 132 aa5.97□□□□□ -1.45
DDX55-210ENST00000543016 KRTAP3-1Q9BYR8 98 aa5.96□□□□□ -1.46
DDX55-210ENST00000543016 KRTAP10-6P60371 365 aaPredicted RBP5.95□□□□□ -1.46
DDX55-210ENST00000543016 KLKP1Q107X0 134 aa5.95□□□□□ -1.46
DDX55-210ENST00000543016 S4R3F8 94 aa5.9□□□□□ -1.46
DDX55-210ENST00000543016 COX7CP15954 63 aa5.89□□□□□ -1.47
DDX55-210ENST00000543016 C20orf197Q8N268 126 aa5.88□□□□□ -1.47
DDX55-210ENST00000543016 CSAG1Q6PB30 78 aa5.86□□□□□ -1.47
DDX55-210ENST00000543016 SNURFQ9Y675 71 aa5.86□□□□□ -1.47
DDX55-210ENST00000543016 DMAC1Q96GE9 116 aa5.85□□□□□ -1.47
DDX55-210ENST00000543016 LCA10Q71F78 164 aa5.84□□□□□ -1.47
DDX55-210ENST00000543016 SPANXA2-OT1Q8N9U9 137 aa5.83□□□□□ -1.48
DDX55-210ENST00000543016 ANAPC13Q9BS18 74 aa5.83□□□□□ -1.48
DDX55-210ENST00000543016 KRTAP9-8Q9BYQ0 159 aa5.83□□□□□ -1.48
DDX55-210ENST00000543016 NDUFC1O43677 76 aa5.82□□□□□ -1.48
DDX55-210ENST00000543016 ACYP2P14621 99 aa5.8□□□□□ -1.48
DDX55-210ENST00000543016 MT2AP02795 61 aa5.78□□□□□ -1.48
DDX55-210ENST00000543016 KRTAP10-10P60014 251 aa5.74□□□□□ -1.49
DDX55-210ENST00000543016 H7BZZ5 65 aa5.71□□□□□ -1.5
DDX55-210ENST00000543016 MT1FP04733 61 aa5.71□□□□□ -1.5
DDX55-210ENST00000543016 H0YAA0 97 aa5.7□□□□□ -1.5
DDX55-210ENST00000543016 SPTSSBQ8NFR3 76 aa5.7□□□□□ -1.5
DDX55-210ENST00000543016 CHKB-CPT1BH3BT56 60 aa5.67□□□□□ -1.5
DDX55-210ENST00000543016 CCDC179H3BU77 68 aa5.66□□□□□ -1.5
DDX55-210ENST00000543016 CYSTM1Q9H1C7 97 aa5.65□□□□□ -1.5
DDX55-210ENST00000543016 CRIPTQ9P021 101 aa5.62□□□□□ -1.51
DDX55-210ENST00000543016 ATP5EP56381 51 aaPredicted RBP5.61□□□□□ -1.51
DDX55-210ENST00000543016 COA5Q86WW8 74 aa5.59□□□□□ -1.51
DDX55-210ENST00000543016 ADM2Q7Z4H4 148 aa5.57□□□□□ -1.52
DDX55-210ENST00000543016 TMEM258P61165 79 aa5.55□□□□□ -1.52
DDX55-210ENST00000543016 SPRR2GQ9BYE4 73 aa5.52□□□□□ -1.53
DDX55-210ENST00000543016 P0C880 135 aa5.46□□□□□ -1.54
DDX55-210ENST00000543016 CRCT1Q9UGL9 99 aa5.45□□□□□ -1.54
DDX55-210ENST00000543016 SEC61GP60059 68 aa5.44□□□□□ -1.54
DDX55-210ENST00000543016 R4GN34 69 aa5.44□□□□□ -1.54
DDX55-210ENST00000543016 KRTAP19-8Q3LI54 63 aa5.43□□□□□ -1.54
DDX55-210ENST00000543016 FSIP2Q5CZC0 6907 aa5.41□□□□□ -1.54
DDX55-210ENST00000543016 Q5VV11 94 aa5.41□□□□□ -1.54
DDX55-210ENST00000543016 SERP1Q9Y6X1 66 aa5.41□□□□□ -1.54
DDX55-210ENST00000543016 KRTAP23-1A1A580 65 aa5.4□□□□□ -1.54
DDX55-210ENST00000543016 PCP4P48539 62 aa5.4□□□□□ -1.54
DDX55-210ENST00000543016 M0QZ58 72 aa5.39□□□□□ -1.55
DDX55-210ENST00000543016 USH2AO75445 5202 aa5.38□□□□□ -1.55
DDX55-210ENST00000543016 MT1BP07438 61 aa5.34□□□□□ -1.55
DDX55-210ENST00000543016 KRTAP19-6Q3LI70 58 aa5.33□□□□□ -1.56
DDX55-210ENST00000543016 A0A1B0GU69 56 aa5.32□□□□□ -1.56
DDX55-210ENST00000543016 PRR15LQ9BU68 103 aa5.3□□□□□ -1.56
DDX55-210ENST00000543016 SSPOA2VEC9 5147 aa5.28□□□□□ -1.56
DDX55-210ENST00000543016 A0A1B0GU33 70 aa5.28□□□□□ -1.56
DDX55-210ENST00000543016 PLAC4Q8WY50 150 aa5.28□□□□□ -1.56
DDX55-210ENST00000543016 LINC01558Q9Y6Z2 57 aa5.28□□□□□ -1.56
DDX55-210ENST00000543016 KRTAP5-3Q6L8H2 238 aa5.27□□□□□ -1.57
DDX55-210ENST00000543016 A6NN06 94 aa5.26□□□□□ -1.57
DDX55-210ENST00000543016 LINC01554Q52M75 96 aa5.26□□□□□ -1.57
DDX55-210ENST00000543016 KRTAP15-1Q3LI76 137 aa5.24□□□□□ -1.57
DDX55-210ENST00000543016 V9GYY9 64 aa5.23□□□□□ -1.57
DDX55-210ENST00000543016 RPS28P62857 69 aaKnown RBP5.22□□□□□ -1.57
DDX55-210ENST00000543016 KRTAP13-4Q3LI77 160 aa5.21□□□□□ -1.58
DDX55-210ENST00000543016 KRTAP10-5P60370 271 aa5.19□□□□□ -1.58
DDX55-210ENST00000543016 SMIM26A0A096LP01 95 aa5.18□□□□□ -1.58
DDX55-210ENST00000543016 PRO2289Q9P1D8 64 aa5.18□□□□□ -1.58
DDX55-210ENST00000543016 Q1T7F1 81 aa5.16□□□□□ -1.58
DDX55-210ENST00000543016 SPATA8Q6RVD6 105 aa5.15□□□□□ -1.59
DDX55-210ENST00000543016 FCGBPQ9Y6R7 5405 aaPredicted RBP5.13□□□□□ -1.59
DDX55-210ENST00000543016 UQCR11O14957 56 aa5.11□□□□□ -1.59
DDX55-210ENST00000543016 A0A0D9SG42 100 aa5.1□□□□□ -1.59
DDX55-210ENST00000543016 MT1XP80297 61 aa5.08□□□□□ -1.6
DDX55-210ENST00000543016 CAMK2N1Q7Z7J9 78 aa5.05□□□□□ -1.6
DDX55-210ENST00000543016 PSPHP1O15172 72 aa5.04□□□□□ -1.6
DDX55-210ENST00000543016 KRTAP12-1P59990 96 aa5.03□□□□□ -1.6
DDX55-210ENST00000543016 SPINT4Q6UDR6 99 aa5.03□□□□□ -1.6
DDX55-210ENST00000543016 A8MU10 97 aa5.01□□□□□ -1.61
DDX55-210ENST00000543016 MIR22HGQ0VDD5 57 aa5□□□□□ -1.61
DDX55-210ENST00000543016 KRTAP12-2P59991 146 aa4.98□□□□□ -1.61
DDX55-210ENST00000543016 MACF1Q9UPN3 7388 aaKnown RBP4.95□□□□□ -1.62
DDX55-210ENST00000543016 A6NED7 52 aa4.93□□□□□ -1.62
DDX55-210ENST00000543016 K7ERS5 55 aa4.91□□□□□ -1.62
DDX55-210ENST00000543016 KRTAP10-12P60413 245 aa4.87□□□□□ -1.63
DDX55-210ENST00000543016 KRTAP6-3Q3LI67 103 aa4.87□□□□□ -1.63
DDX55-210ENST00000543016 SYNE2Q8WXH0 6885 aaKnown RBP4.86□□□□□ -1.63
DDX55-210ENST00000543016 KRTAP10-7P60409 375 aaPredicted RBP4.83□□□□□ -1.64
DDX55-210ENST00000543016 CDC42SE1Q9NRR8 79 aa4.79□□□□□ -1.64
DDX55-210ENST00000543016 KRTAP5-9P26371 169 aa4.77□□□□□ -1.65
DDX55-210ENST00000543016 KRTAP8-1Q8IUC2 63 aa4.77□□□□□ -1.65
DDX55-210ENST00000543016 C10orf95Q9H7T3 257 aa4.77□□□□□ -1.65
DDX55-210ENST00000543016 TNP1P09430 55 aa4.76□□□□□ -1.65
DDX55-210ENST00000543016 KRTAP25-1Q3LHN0 102 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms