RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 MT1FP04733 61 aa8.88□□□□□ -0.99
VPS33A-205ENST00000541169 NDUFC1O43677 76 aa8.87□□□□□ -0.99
VPS33A-205ENST00000541169 DMAC1Q96GE9 116 aa8.84□□□□□ -0.99
VPS33A-205ENST00000541169 C20orf197Q8N268 126 aa8.78□□□□□ -1
VPS33A-205ENST00000541169 KRTAP9-3Q9BYQ3 159 aa8.77□□□□□ -1.01
VPS33A-205ENST00000541169 SNURFQ9Y675 71 aa8.76□□□□□ -1.01
VPS33A-205ENST00000541169 ACYP2P14621 99 aa8.75□□□□□ -1.01
VPS33A-205ENST00000541169 COX7CP15954 63 aa8.73□□□□□ -1.01
VPS33A-205ENST00000541169 SPANXA2-OT1Q8N9U9 137 aa8.73□□□□□ -1.01
VPS33A-205ENST00000541169 H0YAA0 97 aa8.71□□□□□ -1.02
VPS33A-205ENST00000541169 SPTSSBQ8NFR3 76 aa8.65□□□□□ -1.02
VPS33A-205ENST00000541169 CRCT1Q9UGL9 99 aa8.65□□□□□ -1.02
VPS33A-205ENST00000541169 KRTAP9-6A0A140TA67 174 aa8.64□□□□□ -1.03
VPS33A-205ENST00000541169 ANAPC13Q9BS18 74 aa8.63□□□□□ -1.03
VPS33A-205ENST00000541169 CRIPTQ9P021 101 aa8.63□□□□□ -1.03
VPS33A-205ENST00000541169 FSIP2Q5CZC0 6907 aa8.61□□□□□ -1.03
VPS33A-205ENST00000541169 LCE2BO14633 110 aa8.6□□□□□ -1.03
VPS33A-205ENST00000541169 CHKB-CPT1BH3BT56 60 aa8.57□□□□□ -1.04
VPS33A-205ENST00000541169 SPRR2GQ9BYE4 73 aa8.52□□□□□ -1.05
VPS33A-205ENST00000541169 ADM2Q7Z4H4 148 aa8.51□□□□□ -1.05
VPS33A-205ENST00000541169 H7BZZ5 65 aa8.49□□□□□ -1.05
VPS33A-205ENST00000541169 KRTAP19-1Q8IUB9 90 aa8.49□□□□□ -1.05
VPS33A-205ENST00000541169 KRTAP19-8Q3LI54 63 aa8.38□□□□□ -1.07
VPS33A-205ENST00000541169 Q5VV11 94 aa8.38□□□□□ -1.07
VPS33A-205ENST00000541169 COA5Q86WW8 74 aa8.38□□□□□ -1.07
VPS33A-205ENST00000541169 CYSTM1Q9H1C7 97 aa8.38□□□□□ -1.07
VPS33A-205ENST00000541169 USH2AO75445 5202 aa8.36□□□□□ -1.07
VPS33A-205ENST00000541169 CCDC179H3BU77 68 aa8.34□□□□□ -1.07
VPS33A-205ENST00000541169 R4GN34 69 aa8.34□□□□□ -1.07
VPS33A-205ENST00000541169 KRTAP19-6Q3LI70 58 aa8.33□□□□□ -1.08
VPS33A-205ENST00000541169 P0C880 135 aa8.32□□□□□ -1.08
VPS33A-205ENST00000541169 ATP5EP56381 51 aaPredicted RBP8.32□□□□□ -1.08
VPS33A-205ENST00000541169 MT1BP07438 61 aa8.25□□□□□ -1.09
VPS33A-205ENST00000541169 M0QZ58 72 aa8.24□□□□□ -1.09
VPS33A-205ENST00000541169 SEC61GP60059 68 aa8.22□□□□□ -1.09
VPS33A-205ENST00000541169 SSPOA2VEC9 5147 aa8.2□□□□□ -1.1
VPS33A-205ENST00000541169 TMEM258P61165 79 aa8.19□□□□□ -1.1
VPS33A-205ENST00000541169 SERP1Q9Y6X1 66 aa8.17□□□□□ -1.1
VPS33A-205ENST00000541169 PLAC4Q8WY50 150 aa8.13□□□□□ -1.11
VPS33A-205ENST00000541169 A6NN06 94 aa8.1□□□□□ -1.11
VPS33A-205ENST00000541169 LINC01554Q52M75 96 aa8.06□□□□□ -1.12
VPS33A-205ENST00000541169 KRTAP10-5P60370 271 aa8.05□□□□□ -1.12
VPS33A-205ENST00000541169 FCGBPQ9Y6R7 5405 aaPredicted RBP8.04□□□□□ -1.12
VPS33A-205ENST00000541169 PRO2289Q9P1D8 64 aa8.03□□□□□ -1.12
VPS33A-205ENST00000541169 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.01□□□□□ -1.13
VPS33A-205ENST00000541169 A0A1B0GU69 56 aa8□□□□□ -1.13
VPS33A-205ENST00000541169 A0A1B0GU33 70 aa7.96□□□□□ -1.14
VPS33A-205ENST00000541169 PRR15LQ9BU68 103 aa7.95□□□□□ -1.14
VPS33A-205ENST00000541169 KRTAP13-4Q3LI77 160 aa7.89□□□□□ -1.15
VPS33A-205ENST00000541169 LINC01558Q9Y6Z2 57 aa7.87□□□□□ -1.15
VPS33A-205ENST00000541169 MT1XP80297 61 aa7.84□□□□□ -1.15
VPS33A-205ENST00000541169 MACF1Q9UPN3 7388 aaKnown RBP7.82□□□□□ -1.16
VPS33A-205ENST00000541169 KRTAP9-7A8MTY7 169 aa7.81□□□□□ -1.16
VPS33A-205ENST00000541169 PCP4P48539 62 aa7.81□□□□□ -1.16
VPS33A-205ENST00000541169 SMIM26A0A096LP01 95 aa7.79□□□□□ -1.16
VPS33A-205ENST00000541169 SPATA8Q6RVD6 105 aa7.79□□□□□ -1.16
VPS33A-205ENST00000541169 V9GYY9 64 aa7.76□□□□□ -1.17
VPS33A-205ENST00000541169 A0A0D9SG42 100 aa7.73□□□□□ -1.17
VPS33A-205ENST00000541169 CAMK2N1Q7Z7J9 78 aa7.73□□□□□ -1.17
VPS33A-205ENST00000541169 KRTAP12-2P59991 146 aa7.68□□□□□ -1.18
VPS33A-205ENST00000541169 KRTAP6-3Q3LI67 103 aa7.68□□□□□ -1.18
VPS33A-205ENST00000541169 UQCR11O14957 56 aa7.66□□□□□ -1.18
VPS33A-205ENST00000541169 SYNE2Q8WXH0 6885 aaKnown RBP7.66□□□□□ -1.18
VPS33A-205ENST00000541169 Q1T7F1 81 aa7.64□□□□□ -1.19
VPS33A-205ENST00000541169 SPINT4Q6UDR6 99 aa7.64□□□□□ -1.19
VPS33A-205ENST00000541169 RPS28P62857 69 aaKnown RBP7.63□□□□□ -1.19
VPS33A-205ENST00000541169 KRTAP12-1P59990 96 aa7.61□□□□□ -1.19
VPS33A-205ENST00000541169 A8MU10 97 aa7.54□□□□□ -1.2
VPS33A-205ENST00000541169 KRTAP10-12P60413 245 aa7.51□□□□□ -1.21
VPS33A-205ENST00000541169 KRTAP5-9P26371 169 aa7.49□□□□□ -1.21
VPS33A-205ENST00000541169 PSPHP1O15172 72 aa7.48□□□□□ -1.21
VPS33A-205ENST00000541169 MIR22HGQ0VDD5 57 aa7.47□□□□□ -1.21
VPS33A-205ENST00000541169 KRTAP10-7P60409 375 aaPredicted RBP7.46□□□□□ -1.22
VPS33A-205ENST00000541169 KRTAP8-1Q8IUC2 63 aa7.44□□□□□ -1.22
VPS33A-205ENST00000541169 LOC100996750A0A140TA64 210 aa7.4□□□□□ -1.22
VPS33A-205ENST00000541169 KRTAP4-6Q9BYQ5 205 aa7.4□□□□□ -1.22
VPS33A-205ENST00000541169 K7ERS5 55 aa7.37□□□□□ -1.23
VPS33A-205ENST00000541169 KRTAP4-8A0A0G2JLE6 195 aa7.32□□□□□ -1.24
VPS33A-205ENST00000541169 KRTAP4-8Q9BYQ9 185 aa7.32□□□□□ -1.24
VPS33A-205ENST00000541169 A6NED7 52 aa7.31□□□□□ -1.24
VPS33A-205ENST00000541169 SPRR2FQ96RM1 72 aa7.31□□□□□ -1.24
VPS33A-205ENST00000541169 TNP1P09430 55 aa7.25□□□□□ -1.25
VPS33A-205ENST00000541169 C10orf95Q9H7T3 257 aa7.22□□□□□ -1.25
VPS33A-205ENST00000541169 KMT2DO14686 5537 aa7.21□□□□□ -1.25
VPS33A-205ENST00000541169 NEBP20929 6669 aa7.15□□□□□ -1.26
VPS33A-205ENST00000541169 SPRR2EP22531 72 aa7.12□□□□□ -1.27
VPS33A-205ENST00000541169 SPRR2BP35325 72 aa7.12□□□□□ -1.27
VPS33A-205ENST00000541169 SPRR2AP35326 72 aa7.12□□□□□ -1.27
VPS33A-205ENST00000541169 CDC42SE1Q9NRR8 79 aa7.08□□□□□ -1.28
VPS33A-205ENST00000541169 MUC12Q9UKN1 5478 aa7.07□□□□□ -1.28
VPS33A-205ENST00000541169 KRTAP25-1Q3LHN0 102 aa7.06□□□□□ -1.28
VPS33A-205ENST00000541169 LCE1AQ5T7P2 110 aa7.06□□□□□ -1.28
VPS33A-205ENST00000541169 KRTAP19-7Q3SYF9 63 aa7□□□□□ -1.29
VPS33A-205ENST00000541169 MDN1Q9NU22 5596 aa6.95□□□□□ -1.3
VPS33A-205ENST00000541169 LCE3AQ5TA76 89 aa6.95□□□□□ -1.3
VPS33A-205ENST00000541169 MT1EP04732 61 aa6.94□□□□□ -1.3
VPS33A-205ENST00000541169 KRTAP19-5Q3LI72 72 aa6.92□□□□□ -1.3
VPS33A-205ENST00000541169 KRTAP20-1Q3LI63 56 aa6.91□□□□□ -1.3
VPS33A-205ENST00000541169 SPRR2DP22532 72 aa6.89□□□□□ -1.31
VPS33A-205ENST00000541169 KRTAP23-1A1A580 65 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms