RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 LPAP08519 4548 aa5.41□□□□□ -1.54
CDC42SE1-207ENST00000540998 KRTAP25-1Q3LHN0 102 aa5.41□□□□□ -1.54
CDC42SE1-207ENST00000540998 H3BS24 57 aa5.4□□□□□ -1.55
CDC42SE1-207ENST00000540998 RPS29P62273 56 aaKnown RBP5.4□□□□□ -1.55
CDC42SE1-207ENST00000540998 KRTAP13-4Q3LI77 160 aa5.4□□□□□ -1.55
CDC42SE1-207ENST00000540998 KRTAP10-8P60410 259 aa5.39□□□□□ -1.55
CDC42SE1-207ENST00000540998 TNXBP22105 4242 aa5.38□□□□□ -1.55
CDC42SE1-207ENST00000540998 RYR2Q92736 4967 aa5.36□□□□□ -1.55
CDC42SE1-207ENST00000540998 KRTAP10-6P60371 365 aaPredicted RBP5.34□□□□□ -1.56
CDC42SE1-207ENST00000540998 A0A1B0GVY2 172 aa5.33□□□□□ -1.56
CDC42SE1-207ENST00000540998 KRTAP21-3Q3LHN1 58 aa5.31□□□□□ -1.56
CDC42SE1-207ENST00000540998 C10orf95Q9H7T3 257 aa5.31□□□□□ -1.56
CDC42SE1-207ENST00000540998 J3QL48 77 aa5.3□□□□□ -1.56
CDC42SE1-207ENST00000540998 P0C880 135 aa5.3□□□□□ -1.56
CDC42SE1-207ENST00000540998 ROMO1P60602 79 aa5.3□□□□□ -1.56
CDC42SE1-207ENST00000540998 LRP2P98164 4655 aa5.3□□□□□ -1.56
CDC42SE1-207ENST00000540998 K7ERS5 55 aa5.28□□□□□ -1.56
CDC42SE1-207ENST00000540998 KIAA1109Q2LD37 5005 aa5.26□□□□□ -1.57
CDC42SE1-207ENST00000540998 KRTAP17-1Q9BYP8 105 aa5.26□□□□□ -1.57
CDC42SE1-207ENST00000540998 TPRXLQ17RH7 258 aa5.25□□□□□ -1.57
CDC42SE1-207ENST00000540998 RPL37P61927 97 aaKnown RBP5.24□□□□□ -1.57
CDC42SE1-207ENST00000540998 XP32Q5T750 250 aa5.24□□□□□ -1.57
CDC42SE1-207ENST00000540998 RYR3Q15413 4870 aa5.23□□□□□ -1.57
CDC42SE1-207ENST00000540998 S4R3F8 94 aa5.23□□□□□ -1.57
CDC42SE1-207ENST00000540998 RYR1P21817 5038 aa5.22□□□□□ -1.57
CDC42SE1-207ENST00000540998 KRTAP12-2P59991 146 aa5.21□□□□□ -1.58
CDC42SE1-207ENST00000540998 Q5VSD8 79 aa5.19□□□□□ -1.58
CDC42SE1-207ENST00000540998 SPINT4Q6UDR6 99 aa5.18□□□□□ -1.58
CDC42SE1-207ENST00000540998 ABCA13Q86UQ4 5058 aa5.17□□□□□ -1.58
CDC42SE1-207ENST00000540998 KRTAP12-1P59990 96 aa5.1□□□□□ -1.59
CDC42SE1-207ENST00000540998 EPPK1P58107 5090 aaKnown RBP5.07□□□□□ -1.6
CDC42SE1-207ENST00000540998 MT1HL1P0DM35 61 aa5.06□□□□□ -1.6
CDC42SE1-207ENST00000540998 NDUFAF8A1L188 74 aa5.02□□□□□ -1.61
CDC42SE1-207ENST00000540998 MUC2Q02817 5179 aa5□□□□□ -1.61
CDC42SE1-207ENST00000540998 KRTAP15-1Q3LI76 137 aa4.98□□□□□ -1.61
CDC42SE1-207ENST00000540998 LORP23490 312 aaPredicted RBP4.97□□□□□ -1.61
CDC42SE1-207ENST00000540998 M0QZ58 72 aa4.96□□□□□ -1.61
CDC42SE1-207ENST00000540998 KRTAP4-5Q9BYR2 181 aa4.93□□□□□ -1.62
CDC42SE1-207ENST00000540998 MUC17Q685J3 4493 aa4.9□□□□□ -1.63
CDC42SE1-207ENST00000540998 R4GN34 69 aa4.9□□□□□ -1.63
CDC42SE1-207ENST00000540998 KRTAP4-1Q9BYQ7 146 aa4.86□□□□□ -1.63
CDC42SE1-207ENST00000540998 HERC2O95714 4834 aa4.75□□□□□ -1.65
CDC42SE1-207ENST00000540998 PCLOQ9Y6V0 5065 aa4.73□□□□□ -1.65
CDC42SE1-207ENST00000540998 FAT4Q6V0I7 4981 aa4.73□□□□□ -1.65
CDC42SE1-207ENST00000540998 LCE2BO14633 110 aa4.71□□□□□ -1.66
CDC42SE1-207ENST00000540998 PLAC4Q8WY50 150 aa4.71□□□□□ -1.66
CDC42SE1-207ENST00000540998 CAMK2N1Q7Z7J9 78 aa4.69□□□□□ -1.66
CDC42SE1-207ENST00000540998 HERC1Q15751 4861 aa4.67□□□□□ -1.66
CDC42SE1-207ENST00000540998 SEC61BP60468 96 aaKnown RBP4.67□□□□□ -1.66
CDC42SE1-207ENST00000540998 KRTAP19-2Q3LHN2 52 aa4.67□□□□□ -1.66
CDC42SE1-207ENST00000540998 A0A0A0MQY5 61 aa4.65□□□□□ -1.67
CDC42SE1-207ENST00000540998 FLGP20930 4061 aaPredicted RBP4.61□□□□□ -1.67
CDC42SE1-207ENST00000540998 LCE2CQ5TA81 110 aa4.59□□□□□ -1.67
CDC42SE1-207ENST00000540998 RNF213Q63HN8 5207 aa4.58□□□□□ -1.68
CDC42SE1-207ENST00000540998 BIRC6Q9NR09 4857 aa4.53□□□□□ -1.68
CDC42SE1-207ENST00000540998 LCE2AQ5TA79 106 aaPredicted RBP4.49□□□□□ -1.69
CDC42SE1-207ENST00000540998 LUZP6Q538Z0 58 aa4.47□□□□□ -1.69
CDC42SE1-207ENST00000540998 HMCN2Q8NDA2 5059 aa4.46□□□□□ -1.7
CDC42SE1-207ENST00000540998 PP632Q6XCG6 107 aa4.45□□□□□ -1.7
CDC42SE1-207ENST00000540998 UBR4Q5T4S7 5183 aa4.45□□□□□ -1.7
CDC42SE1-207ENST00000540998 TNP1P09430 55 aa4.43□□□□□ -1.7
CDC42SE1-207ENST00000540998 M0R2T5 61 aa4.34□□□□□ -1.71
CDC42SE1-207ENST00000540998 KRTAP19-1Q8IUB9 90 aa4.34□□□□□ -1.71
CDC42SE1-207ENST00000540998 LCE3AQ5TA76 89 aa4.31□□□□□ -1.72
CDC42SE1-207ENST00000540998 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
CDC42SE1-207ENST00000540998 SPRR2GQ9BYE4 73 aa4.26□□□□□ -1.73
CDC42SE1-207ENST00000540998 MT1FP04733 61 aa4.25□□□□□ -1.73
CDC42SE1-207ENST00000540998 KRTAP10-10P60014 251 aa4.24□□□□□ -1.73
CDC42SE1-207ENST00000540998 MT1HP80294 61 aa4.23□□□□□ -1.73
CDC42SE1-207ENST00000540998 MT2AP02795 61 aa4.2□□□□□ -1.74
CDC42SE1-207ENST00000540998 USH2AO75445 5202 aa4.18□□□□□ -1.74
CDC42SE1-207ENST00000540998 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
CDC42SE1-207ENST00000540998 KMT2DO14686 5537 aa4.17□□□□□ -1.74
CDC42SE1-207ENST00000540998 KRTAP9-8Q9BYQ0 159 aa4.14□□□□□ -1.75
CDC42SE1-207ENST00000540998 KRTAP10-5P60370 271 aa4.1□□□□□ -1.75
CDC42SE1-207ENST00000540998 MT1XP80297 61 aa4.1□□□□□ -1.75
CDC42SE1-207ENST00000540998 MT1BP07438 61 aa4.09□□□□□ -1.75
CDC42SE1-207ENST00000540998 KRTAP10-7P60409 375 aaPredicted RBP4.08□□□□□ -1.76
CDC42SE1-207ENST00000540998 KRTAP8-1Q8IUC2 63 aa4.05□□□□□ -1.76
CDC42SE1-207ENST00000540998 KRTAP12-3P60328 96 aa4.04□□□□□ -1.76
CDC42SE1-207ENST00000540998 KRTAP10-12P60413 245 aa4.03□□□□□ -1.76
CDC42SE1-207ENST00000540998 KRTAP19-8Q3LI54 63 aa4.02□□□□□ -1.77
CDC42SE1-207ENST00000540998 KRTAP9-3Q9BYQ3 159 aa3.94□□□□□ -1.78
CDC42SE1-207ENST00000540998 KRTAP19-5Q3LI72 72 aa3.89□□□□□ -1.79
CDC42SE1-207ENST00000540998 KRTAP4-8A0A0G2JLE6 195 aa3.88□□□□□ -1.79
CDC42SE1-207ENST00000540998 KRTAP4-8Q9BYQ9 185 aa3.88□□□□□ -1.79
CDC42SE1-207ENST00000540998 PRO2289Q9P1D8 64 aa3.85□□□□□ -1.79
CDC42SE1-207ENST00000540998 FSIP2Q5CZC0 6907 aa3.82□□□□□ -1.8
CDC42SE1-207ENST00000540998 KRTAP4-7Q9BYR0 210 aa3.81□□□□□ -1.8
CDC42SE1-207ENST00000540998 KRTAP9-6A8MVA2 160 aa3.8□□□□□ -1.8
CDC42SE1-207ENST00000540998 LCE3CQ5T5A8 94 aa3.78□□□□□ -1.8
CDC42SE1-207ENST00000540998 INE1O15225 51 aa3.76□□□□□ -1.81
CDC42SE1-207ENST00000540998 KRTAP19-7Q3SYF9 63 aa3.65□□□□□ -1.82
CDC42SE1-207ENST00000540998 SSPOA2VEC9 5147 aa3.62□□□□□ -1.83
CDC42SE1-207ENST00000540998 MUC12Q9UKN1 5478 aa3.61□□□□□ -1.83
CDC42SE1-207ENST00000540998 FCGBPQ9Y6R7 5405 aaPredicted RBP3.59□□□□□ -1.83
CDC42SE1-207ENST00000540998 DSTQ03001 7570 aaKnown RBP3.59□□□□□ -1.84
CDC42SE1-207ENST00000540998 LOC100996750A0A140TA64 210 aa3.54□□□□□ -1.84
CDC42SE1-207ENST00000540998 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
CDC42SE1-207ENST00000540998 MT1LQ93083 61 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms