RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 UBR5O95071 2799 aaPredicted RBP1.79□□□□□ -2.12
YBX3-210ENST00000540975 SVEP1Q4LDE5 3571 aa1.79□□□□□ -2.12
YBX3-210ENST00000540975 SPTBN4Q9H254 2564 aa1.79□□□□□ -2.12
YBX3-210ENST00000540975 COL6A5A8TX70 2615 aa1.79□□□□□ -2.12
YBX3-210ENST00000540975 ITPR1Q14643 2758 aa1.79□□□□□ -2.12
YBX3-210ENST00000540975 FBN2P35556 2912 aa1.78□□□□□ -2.12
YBX3-210ENST00000540975 LRRK2Q5S007 2527 aa1.78□□□□□ -2.12
YBX3-210ENST00000540975 VWFP04275 2813 aa1.78□□□□□ -2.12
YBX3-210ENST00000540975 MXRA5Q9NR99 2828 aa1.77□□□□□ -2.13
YBX3-210ENST00000540975 GCN1Q92616 2671 aaKnown RBP1.77□□□□□ -2.13
YBX3-210ENST00000540975 JMJD1CQ15652 2540 aa1.77□□□□□ -2.13
YBX3-210ENST00000540975 FLG2Q5D862 2391 aaPredicted RBP1.77□□□□□ -2.13
YBX3-210ENST00000540975 APLNQ9ULZ1 77 aa1.77□□□□□ -2.13
YBX3-210ENST00000540975 ABCA12Q86UK0 2595 aa1.77□□□□□ -2.13
YBX3-210ENST00000540975 SONP18583 2426 aaKnown RBP1.77□□□□□ -2.13
YBX3-210ENST00000540975 TEX15Q9BXT5 2789 aa1.76□□□□□ -2.13
YBX3-210ENST00000540975 CFAP46Q8IYW2 2715 aa1.76□□□□□ -2.13
YBX3-210ENST00000540975 IGSF10Q6WRI0 2623 aa1.76□□□□□ -2.13
YBX3-210ENST00000540975 POLQO75417 2590 aa1.76□□□□□ -2.13
YBX3-210ENST00000540975 CCDC168Q8NDH2 2452 aa1.76□□□□□ -2.13
YBX3-210ENST00000540975 ZFYVE26Q68DK2 2539 aa1.75□□□□□ -2.13
YBX3-210ENST00000540975 TRRAPQ9Y4A5 3859 aa1.75□□□□□ -2.13
YBX3-210ENST00000540975 DNHD1Q96M86 4753 aa1.74□□□□□ -2.13
YBX3-210ENST00000540975 FLNAP21333 2647 aaKnown RBP1.74□□□□□ -2.13
YBX3-210ENST00000540975 APCP25054 2843 aa1.74□□□□□ -2.13
YBX3-210ENST00000540975 ZANQ9Y493 2812 aa1.74□□□□□ -2.13
YBX3-210ENST00000540975 UTP20O75691 2785 aaKnown RBP1.74□□□□□ -2.13
YBX3-210ENST00000540975 FLNCQ14315 2725 aa1.74□□□□□ -2.13
YBX3-210ENST00000540975 ANK3Q12955 4377 aaKnown RBP1.73□□□□□ -2.13
YBX3-210ENST00000540975 STAB1Q9NY15 2570 aa1.73□□□□□ -2.13
YBX3-210ENST00000540975 RPS29P62273 56 aaKnown RBP1.73□□□□□ -2.13
YBX3-210ENST00000540975 NF1P21359 2839 aa1.73□□□□□ -2.13
YBX3-210ENST00000540975 VPS13CQ709C8 3753 aa1.73□□□□□ -2.13
YBX3-210ENST00000540975 MTORP42345 2549 aa1.72□□□□□ -2.13
YBX3-210ENST00000540975 CRYBG3Q68DQ2 2970 aa1.71□□□□□ -2.14
YBX3-210ENST00000540975 PDZD2O15018 2839 aa1.71□□□□□ -2.14
YBX3-210ENST00000540975 SPINK1P00995 79 aa1.71□□□□□ -2.14
YBX3-210ENST00000540975 CSMD2Q7Z408 3487 aa1.71□□□□□ -2.14
YBX3-210ENST00000540975 RYR3Q15413 4870 aa1.71□□□□□ -2.14
YBX3-210ENST00000540975 ACANP16112 2415 aa1.7□□□□□ -2.14
YBX3-210ENST00000540975 VPS13DQ5THJ4 4388 aa1.7□□□□□ -2.14
YBX3-210ENST00000540975 RYR1P21817 5038 aa1.7□□□□□ -2.14
YBX3-210ENST00000540975 NIPBLQ6KC79 2804 aaeCLIP1.69□□□□□ -2.14
YBX3-210ENST00000540975 NOTCH1P46531 2555 aa1.68□□□□□ -2.14
YBX3-210ENST00000540975 FRAS1Q86XX4 4008 aa1.68□□□□□ -2.14
YBX3-210ENST00000540975 NBEAL2Q6ZNJ1 2754 aa1.68□□□□□ -2.14
YBX3-210ENST00000540975 SPINK6Q6UWN8 80 aa1.68□□□□□ -2.14
YBX3-210ENST00000540975 CENPEQ02224 2701 aa1.68□□□□□ -2.14
YBX3-210ENST00000540975 TENM4Q6N022 2769 aa1.67□□□□□ -2.14
YBX3-210ENST00000540975 S4R3F8 94 aa1.67□□□□□ -2.14
YBX3-210ENST00000540975 NSD1Q96L73 2696 aaPredicted RBP1.67□□□□□ -2.14
YBX3-210ENST00000540975 ANK2Q01484 3957 aa1.67□□□□□ -2.14
YBX3-210ENST00000540975 CUBNO60494 3623 aa1.66□□□□□ -2.14
YBX3-210ENST00000540975 DNAH8Q96JB1 4490 aa1.66□□□□□ -2.14
YBX3-210ENST00000540975 ZNF469Q96JG9 3925 aaPredicted RBP1.66□□□□□ -2.14
YBX3-210ENST00000540975 CSMD3Q7Z407 3707 aa1.66□□□□□ -2.14
YBX3-210ENST00000540975 ATRQ13535 2644 aa1.65□□□□□ -2.15
YBX3-210ENST00000540975 LYSTQ99698 3801 aa1.64□□□□□ -2.15
YBX3-210ENST00000540975 HIVEP1P15822 2718 aa1.64□□□□□ -2.15
YBX3-210ENST00000540975 SRRM2Q9UQ35 2752 aaKnown RBP1.64□□□□□ -2.15
YBX3-210ENST00000540975 DNAH17Q9UFH2 4485 aa1.63□□□□□ -2.15
YBX3-210ENST00000540975 ITPR2Q14571 2701 aa1.63□□□□□ -2.15
YBX3-210ENST00000540975 DYNC2H1Q8NCM8 4307 aaKnown RBP1.63□□□□□ -2.15
YBX3-210ENST00000540975 F8P00451 2351 aa1.63□□□□□ -2.15
YBX3-210ENST00000540975 PRKDCP78527 4128 aaKnown RBP1.63□□□□□ -2.15
YBX3-210ENST00000540975 MYCBP2O75592 4640 aa1.62□□□□□ -2.15
YBX3-210ENST00000540975 MEGF8Q7Z7M0 2845 aa1.62□□□□□ -2.15
YBX3-210ENST00000540975 DNAH11Q96DT5 4516 aa1.62□□□□□ -2.15
YBX3-210ENST00000540975 BIRC6Q9NR09 4857 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 DNAH7Q8WXX0 4024 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 A0A0D9SG42 100 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 Q5VSD8 79 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 DNAH10Q8IVF4 4471 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 EPPK1P58107 5090 aaKnown RBP1.61□□□□□ -2.15
YBX3-210ENST00000540975 DNAH3Q8TD57 4116 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 DNAH6Q9C0G6 4158 aa1.61□□□□□ -2.15
YBX3-210ENST00000540975 CMYA5Q8N3K9 4069 aa1.6□□□□□ -2.15
YBX3-210ENST00000540975 TENM3Q9P273 2699 aa1.59□□□□□ -2.16
YBX3-210ENST00000540975 DNAH9Q9NYC9 4486 aa1.57□□□□□ -2.16
YBX3-210ENST00000540975 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
YBX3-210ENST00000540975 HYDINQ4G0P3 5121 aa1.56□□□□□ -2.16
YBX3-210ENST00000540975 HECTD4Q9Y4D8 3996 aa1.56□□□□□ -2.16
YBX3-210ENST00000540975 DNAH2Q9P225 4427 aa1.56□□□□□ -2.16
YBX3-210ENST00000540975 STAB2Q8WWQ8 2551 aa1.55□□□□□ -2.16
YBX3-210ENST00000540975 MGAM2Q2M2H8 2515 aa1.55□□□□□ -2.16
YBX3-210ENST00000540975 PKD1L1Q8TDX9 2849 aa1.55□□□□□ -2.16
YBX3-210ENST00000540975 HUWE1Q7Z6Z7 4374 aaKnown RBP1.55□□□□□ -2.16
YBX3-210ENST00000540975 M0QZ58 72 aa1.54□□□□□ -2.16
YBX3-210ENST00000540975 NBEAL1Q6ZS30 2694 aa1.54□□□□□ -2.16
YBX3-210ENST00000540975 SACSQ9NZJ4 4579 aa1.53□□□□□ -2.16
YBX3-210ENST00000540975 TGP01266 2768 aa1.52□□□□□ -2.17
YBX3-210ENST00000540975 KMT2CQ8NEZ4 4911 aaKnown RBP1.51□□□□□ -2.17
YBX3-210ENST00000540975 KMT2AQ03164 3969 aa1.51□□□□□ -2.17
YBX3-210ENST00000540975 C9orf92A6NGG3 77 aa1.51□□□□□ -2.17
YBX3-210ENST00000540975 RYR2Q92736 4967 aa1.51□□□□□ -2.17
YBX3-210ENST00000540975 KRTAP10-4P60372 401 aaPredicted RBP1.5□□□□□ -2.17
YBX3-210ENST00000540975 COL7A1Q02388 2944 aa1.5□□□□□ -2.17
YBX3-210ENST00000540975 NEBP20929 6669 aa1.49□□□□□ -2.17
YBX3-210ENST00000540975 PKHD1L1Q86WI1 4243 aa1.49□□□□□ -2.17
YBX3-210ENST00000540975 SYNE2Q8WXH0 6885 aaKnown RBP1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms