RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 KIAA1109Q2LD37 5005 aa5.43□□□□□ -1.54
CLIP1-212ENST00000540304 EPPK1P58107 5090 aaKnown RBP5.42□□□□□ -1.54
CLIP1-212ENST00000540304 KRTAP9-6A0A140TA67 174 aa5.41□□□□□ -1.54
CLIP1-212ENST00000540304 A8MUU9 505 aa5.41□□□□□ -1.54
CLIP1-212ENST00000540304 Q5VSD8 79 aa5.41□□□□□ -1.54
CLIP1-212ENST00000540304 RYR1P21817 5038 aa5.4□□□□□ -1.55
CLIP1-212ENST00000540304 KRTAP13-3Q3SY46 172 aa5.4□□□□□ -1.55
CLIP1-212ENST00000540304 Q5W150 140 aa5.4□□□□□ -1.55
CLIP1-212ENST00000540304 C20orf166-AS1Q96NR2 134 aa5.4□□□□□ -1.55
CLIP1-212ENST00000540304 FLG2Q5D862 2391 aaPredicted RBP5.39□□□□□ -1.55
CLIP1-212ENST00000540304 MYCBP2O75592 4640 aa5.36□□□□□ -1.55
CLIP1-212ENST00000540304 A0A1B0GU69 56 aa5.36□□□□□ -1.55
CLIP1-212ENST00000540304 UQCR11O14957 56 aa5.35□□□□□ -1.55
CLIP1-212ENST00000540304 TNXBP22105 4242 aa5.34□□□□□ -1.55
CLIP1-212ENST00000540304 KRTAP17-1Q9BYP8 105 aa5.34□□□□□ -1.55
CLIP1-212ENST00000540304 LUZP6Q538Z0 58 aa5.34□□□□□ -1.55
CLIP1-212ENST00000540304 KRTAP10-8P60410 259 aa5.33□□□□□ -1.56
CLIP1-212ENST00000540304 SEC61BP60468 96 aaKnown RBP5.33□□□□□ -1.56
CLIP1-212ENST00000540304 Q8N1X5 172 aa5.32□□□□□ -1.56
CLIP1-212ENST00000540304 IGKV2-30P06310 120 aa5.3□□□□□ -1.56
CLIP1-212ENST00000540304 FAT3Q8TDW7 4589 aa5.3□□□□□ -1.56
CLIP1-212ENST00000540304 C9orf92A6NGG3 77 aa5.3□□□□□ -1.56
CLIP1-212ENST00000540304 CRIPTQ9P021 101 aa5.3□□□□□ -1.56
CLIP1-212ENST00000540304 DMBT1Q9UGM3 2413 aaPredicted RBP5.29□□□□□ -1.56
CLIP1-212ENST00000540304 LCE3BQ5TA77 95 aa5.28□□□□□ -1.56
CLIP1-212ENST00000540304 SPINT4Q6UDR6 99 aa5.25□□□□□ -1.57
CLIP1-212ENST00000540304 IGKV2D-30A0A075B6S6 120 aa5.25□□□□□ -1.57
CLIP1-212ENST00000540304 KRTAP4-12Q9BQ66 201 aa5.24□□□□□ -1.57
CLIP1-212ENST00000540304 MT1HL1P0DM35 61 aa5.22□□□□□ -1.57
CLIP1-212ENST00000540304 KRTAP15-1Q3LI76 137 aa5.2□□□□□ -1.58
CLIP1-212ENST00000540304 DMAC1Q96GE9 116 aa5.2□□□□□ -1.58
CLIP1-212ENST00000540304 ACYP2P14621 99 aa5.19□□□□□ -1.58
CLIP1-212ENST00000540304 ABCA13Q86UQ4 5058 aa5.17□□□□□ -1.58
CLIP1-212ENST00000540304 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
CLIP1-212ENST00000540304 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
CLIP1-212ENST00000540304 K7ERS5 55 aa5.16□□□□□ -1.58
CLIP1-212ENST00000540304 KRTAP4-8A0A0G2JLE6 195 aa5.13□□□□□ -1.59
CLIP1-212ENST00000540304 KRTAP4-5Q9BYR2 181 aa5.13□□□□□ -1.59
CLIP1-212ENST00000540304 RPL37P61927 97 aaKnown RBP5.11□□□□□ -1.59
CLIP1-212ENST00000540304 LPAP08519 4548 aa5.1□□□□□ -1.59
CLIP1-212ENST00000540304 KRTAP19-1Q8IUB9 90 aa5.1□□□□□ -1.59
CLIP1-212ENST00000540304 LRP2P98164 4655 aa5.08□□□□□ -1.6
CLIP1-212ENST00000540304 KRTAP23-1A1A580 65 aa5.08□□□□□ -1.6
CLIP1-212ENST00000540304 H0YAA0 97 aa5.07□□□□□ -1.6
CLIP1-212ENST00000540304 HERC2O95714 4834 aa5.05□□□□□ -1.6
CLIP1-212ENST00000540304 TPRXLQ17RH7 258 aa5.05□□□□□ -1.6
CLIP1-212ENST00000540304 KRTAP3-1Q9BYR8 98 aa5.02□□□□□ -1.61
CLIP1-212ENST00000540304 COX6B2Q6YFQ2 88 aa5.01□□□□□ -1.61
CLIP1-212ENST00000540304 BIRC6Q9NR09 4857 aa4.99□□□□□ -1.61
CLIP1-212ENST00000540304 KRTAP4-7Q9BYR0 210 aa4.97□□□□□ -1.61
CLIP1-212ENST00000540304 C10orf95Q9H7T3 257 aa4.95□□□□□ -1.62
CLIP1-212ENST00000540304 LCE1DQ5T752 114 aa4.94□□□□□ -1.62
CLIP1-212ENST00000540304 PCLOQ9Y6V0 5065 aa4.92□□□□□ -1.62
CLIP1-212ENST00000540304 HERC1Q15751 4861 aa4.88□□□□□ -1.63
CLIP1-212ENST00000540304 S4R3F8 94 aa4.85□□□□□ -1.63
CLIP1-212ENST00000540304 A0A1B0GU33 70 aa4.85□□□□□ -1.63
CLIP1-212ENST00000540304 H1FX-AS1Q4G0G2 97 aa4.84□□□□□ -1.63
CLIP1-212ENST00000540304 MUC2Q02817 5179 aa4.84□□□□□ -1.64
CLIP1-212ENST00000540304 KRTAP4-9Q9BYQ8 210 aa4.81□□□□□ -1.64
CLIP1-212ENST00000540304 MUC17Q685J3 4493 aa4.81□□□□□ -1.64
CLIP1-212ENST00000540304 KRTAP4-1Q9BYQ7 146 aa4.75□□□□□ -1.65
CLIP1-212ENST00000540304 HMCN2Q8NDA2 5059 aa4.75□□□□□ -1.65
CLIP1-212ENST00000540304 KRTAP4-2Q9BYR5 136 aa4.75□□□□□ -1.65
CLIP1-212ENST00000540304 CAMK2N1Q7Z7J9 78 aa4.72□□□□□ -1.65
CLIP1-212ENST00000540304 KRTAP10-6P60371 365 aaPredicted RBP4.71□□□□□ -1.66
CLIP1-212ENST00000540304 KRTAP19-2Q3LHN2 52 aa4.65□□□□□ -1.67
CLIP1-212ENST00000540304 KRTAP13-4Q3LI77 160 aa4.64□□□□□ -1.67
CLIP1-212ENST00000540304 UBR4Q5T4S7 5183 aa4.64□□□□□ -1.67
CLIP1-212ENST00000540304 RNF213Q63HN8 5207 aa4.64□□□□□ -1.67
CLIP1-212ENST00000540304 FAT4Q6V0I7 4981 aa4.64□□□□□ -1.67
CLIP1-212ENST00000540304 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
CLIP1-212ENST00000540304 A0A0D9SG42 100 aa4.6□□□□□ -1.67
CLIP1-212ENST00000540304 LCE4AQ5TA78 99 aa4.56□□□□□ -1.68
CLIP1-212ENST00000540304 PLAC4Q8WY50 150 aa4.56□□□□□ -1.68
CLIP1-212ENST00000540304 M0QZ58 72 aa4.55□□□□□ -1.68
CLIP1-212ENST00000540304 FLGP20930 4061 aaPredicted RBP4.53□□□□□ -1.68
CLIP1-212ENST00000540304 PRO2289Q9P1D8 64 aa4.52□□□□□ -1.69
CLIP1-212ENST00000540304 R4GN34 69 aa4.48□□□□□ -1.69
CLIP1-212ENST00000540304 KRTAP12-2P59991 146 aa4.46□□□□□ -1.7
CLIP1-212ENST00000540304 KRTAP12-1P59990 96 aa4.44□□□□□ -1.7
CLIP1-212ENST00000540304 LCE5AQ5TCM9 118 aa4.42□□□□□ -1.7
CLIP1-212ENST00000540304 KRTAP9-7A8MTY7 169 aa4.41□□□□□ -1.7
CLIP1-212ENST00000540304 MT1HP80294 61 aa4.39□□□□□ -1.71
CLIP1-212ENST00000540304 M0R2T5 61 aa4.36□□□□□ -1.71
CLIP1-212ENST00000540304 KRTAP5-3Q6L8H2 238 aa4.36□□□□□ -1.71
CLIP1-212ENST00000540304 KRTAP19-4Q3LI73 84 aa4.35□□□□□ -1.71
CLIP1-212ENST00000540304 KRTAP9-3Q9BYQ3 159 aa4.29□□□□□ -1.72
CLIP1-212ENST00000540304 MT2AP02795 61 aa4.25□□□□□ -1.73
CLIP1-212ENST00000540304 SPRR2GQ9BYE4 73 aa4.24□□□□□ -1.73
CLIP1-212ENST00000540304 KRTAP9-8Q9BYQ0 159 aa4.24□□□□□ -1.73
CLIP1-212ENST00000540304 MT1FP04733 61 aa4.23□□□□□ -1.73
CLIP1-212ENST00000540304 KRTAP10-10P60014 251 aa4.22□□□□□ -1.73
CLIP1-212ENST00000540304 INE1O15225 51 aa4.19□□□□□ -1.74
CLIP1-212ENST00000540304 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
CLIP1-212ENST00000540304 SPRR5A0A1B0GTR4 108 aa4.09□□□□□ -1.75
CLIP1-212ENST00000540304 USH2AO75445 5202 aa4.07□□□□□ -1.76
CLIP1-212ENST00000540304 MT1BP07438 61 aa4.04□□□□□ -1.76
CLIP1-212ENST00000540304 TNP1P09430 55 aa4.04□□□□□ -1.76
CLIP1-212ENST00000540304 PP632Q6XCG6 107 aa4.01□□□□□ -1.77
CLIP1-212ENST00000540304 KRTAP10-5P60370 271 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms