RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 MT1HL1P0DM35 61 aa12.92□□□□□ -0.34
RAB40C-204ENST00000538492 H0YAA0 97 aa12.86□□□□□ -0.35
RAB40C-204ENST00000538492 EPPK1P58107 5090 aaKnown RBP12.85□□□□□ -0.35
RAB40C-204ENST00000538492 A0A1B0GU33 70 aa12.84□□□□□ -0.35
RAB40C-204ENST00000538492 RBM12B-AS1Q9P1G2 102 aa12.8□□□□□ -0.36
RAB40C-204ENST00000538492 H1FX-AS1Q4G0G2 97 aa12.79□□□□□ -0.36
RAB40C-204ENST00000538492 ADM2Q7Z4H4 148 aa12.78□□□□□ -0.36
RAB40C-204ENST00000538492 PRAC1Q96KF2 57 aa12.77□□□□□ -0.37
RAB40C-204ENST00000538492 KRTAP3-3Q9BYR6 98 aa12.72□□□□□ -0.37
RAB40C-204ENST00000538492 LPAP08519 4548 aa12.69□□□□□ -0.38
RAB40C-204ENST00000538492 LRP2P98164 4655 aa12.64□□□□□ -0.39
RAB40C-204ENST00000538492 S4R3F8 94 aa12.64□□□□□ -0.39
RAB40C-204ENST00000538492 ABCA13Q86UQ4 5058 aa12.58□□□□□ -0.39
RAB40C-204ENST00000538492 KRTAP4-5Q9BYR2 181 aa12.55□□□□□ -0.4
RAB40C-204ENST00000538492 KRTAP10-6P60371 365 aaPredicted RBP12.54□□□□□ -0.4
RAB40C-204ENST00000538492 TPRXLQ17RH7 258 aa12.54□□□□□ -0.4
RAB40C-204ENST00000538492 KRTAP3-2Q9BYR7 98 aa12.47□□□□□ -0.41
RAB40C-204ENST00000538492 KRTAP13-4Q3LI77 160 aa12.41□□□□□ -0.42
RAB40C-204ENST00000538492 CSAG1Q6PB30 78 aa12.4□□□□□ -0.42
RAB40C-204ENST00000538492 P0C880 135 aa12.37□□□□□ -0.43
RAB40C-204ENST00000538492 K7ERS5 55 aa12.33□□□□□ -0.43
RAB40C-204ENST00000538492 A0A0D9SG42 100 aa12.33□□□□□ -0.44
RAB40C-204ENST00000538492 LINC01554Q52M75 96 aa12.19□□□□□ -0.46
RAB40C-204ENST00000538492 J3QL48 77 aa12.12□□□□□ -0.47
RAB40C-204ENST00000538492 HERC2O95714 4834 aa12.11□□□□□ -0.47
RAB40C-204ENST00000538492 SEC61BP60468 96 aaKnown RBP12.08□□□□□ -0.48
RAB40C-204ENST00000538492 CRIPTQ9P021 101 aa12.08□□□□□ -0.48
RAB40C-204ENST00000538492 KRTAP25-1Q3LHN0 102 aa12.06□□□□□ -0.48
RAB40C-204ENST00000538492 MUC17Q685J3 4493 aa12.05□□□□□ -0.48
RAB40C-204ENST00000538492 ROMO1P60602 79 aa12.03□□□□□ -0.48
RAB40C-204ENST00000538492 KRTAP4-1Q9BYQ7 146 aa11.99□□□□□ -0.49
RAB40C-204ENST00000538492 KRTAP12-2P59991 146 aa11.99□□□□□ -0.49
RAB40C-204ENST00000538492 SPINT4Q6UDR6 99 aa11.92□□□□□ -0.5
RAB40C-204ENST00000538492 M0QZ58 72 aa11.89□□□□□ -0.51
RAB40C-204ENST00000538492 KRTAP12-1P59990 96 aa11.89□□□□□ -0.51
RAB40C-204ENST00000538492 BIRC6Q9NR09 4857 aa11.78□□□□□ -0.52
RAB40C-204ENST00000538492 MUC2Q02817 5179 aa11.76□□□□□ -0.53
RAB40C-204ENST00000538492 R4GN34 69 aa11.74□□□□□ -0.53
RAB40C-204ENST00000538492 KRTAP19-2Q3LHN2 52 aa11.71□□□□□ -0.54
RAB40C-204ENST00000538492 LORP23490 312 aaPredicted RBP11.68□□□□□ -0.54
RAB40C-204ENST00000538492 C10orf95Q9H7T3 257 aa11.67□□□□□ -0.54
RAB40C-204ENST00000538492 HERC1Q15751 4861 aa11.58□□□□□ -0.56
RAB40C-204ENST00000538492 PCLOQ9Y6V0 5065 aa11.56□□□□□ -0.56
RAB40C-204ENST00000538492 FLGP20930 4061 aaPredicted RBP11.45□□□□□ -0.58
RAB40C-204ENST00000538492 HMCN2Q8NDA2 5059 aa11.42□□□□□ -0.58
RAB40C-204ENST00000538492 FAT4Q6V0I7 4981 aa11.18□□□□□ -0.62
RAB40C-204ENST00000538492 CAMK2N1Q7Z7J9 78 aa11.12□□□□□ -0.63
RAB40C-204ENST00000538492 LCE2CQ5TA81 110 aa11.1□□□□□ -0.63
RAB40C-204ENST00000538492 RNF213Q63HN8 5207 aa11.01□□□□□ -0.65
RAB40C-204ENST00000538492 UBR4Q5T4S7 5183 aa10.99□□□□□ -0.65
RAB40C-204ENST00000538492 KRTAP15-1Q3LI76 137 aa10.93□□□□□ -0.66
RAB40C-204ENST00000538492 M0R2T5 61 aa10.9□□□□□ -0.66
RAB40C-204ENST00000538492 MT1HP80294 61 aa10.82□□□□□ -0.68
RAB40C-204ENST00000538492 H3BS24 57 aa10.77□□□□□ -0.68
RAB40C-204ENST00000538492 SPRR2GQ9BYE4 73 aa10.73□□□□□ -0.69
RAB40C-204ENST00000538492 KRTAP19-1Q8IUB9 90 aa10.72□□□□□ -0.69
RAB40C-204ENST00000538492 PP632Q6XCG6 107 aa10.68□□□□□ -0.7
RAB40C-204ENST00000538492 TNP1P09430 55 aa10.63□□□□□ -0.71
RAB40C-204ENST00000538492 PLAC4Q8WY50 150 aa10.62□□□□□ -0.71
RAB40C-204ENST00000538492 NDUFAF8A1L188 74 aa10.61□□□□□ -0.71
RAB40C-204ENST00000538492 MT1FP04733 61 aa10.61□□□□□ -0.71
RAB40C-204ENST00000538492 MT2AP02795 61 aa10.61□□□□□ -0.71
RAB40C-204ENST00000538492 KRTAP10-10P60014 251 aa10.61□□□□□ -0.71
RAB40C-204ENST00000538492 KRTAP9-8Q9BYQ0 159 aa10.54□□□□□ -0.72
RAB40C-204ENST00000538492 KRTAP23-1A1A580 65 aa10.35□□□□□ -0.75
RAB40C-204ENST00000538492 KRTAP19-8Q3LI54 63 aa10.26□□□□□ -0.77
RAB40C-204ENST00000538492 MT1BP07438 61 aa10.19□□□□□ -0.78
RAB40C-204ENST00000538492 LCE3AQ5TA76 89 aa10.14□□□□□ -0.79
RAB40C-204ENST00000538492 KRTAP9-3Q9BYQ3 159 aa10.1□□□□□ -0.79
RAB40C-204ENST00000538492 KRTAP10-5P60370 271 aa10.09□□□□□ -0.79
RAB40C-204ENST00000538492 MT1XP80297 61 aa10.07□□□□□ -0.8
RAB40C-204ENST00000538492 LUZP6Q538Z0 58 aa10.04□□□□□ -0.8
RAB40C-204ENST00000538492 SPRR5A0A1B0GTR4 108 aa9.87□□□□□ -0.83
RAB40C-204ENST00000538492 KRTAP8-1Q8IUC2 63 aa9.83□□□□□ -0.84
RAB40C-204ENST00000538492 KRTAP10-12P60413 245 aa9.81□□□□□ -0.84
RAB40C-204ENST00000538492 KRTAP10-7P60409 375 aaPredicted RBP9.8□□□□□ -0.84
RAB40C-204ENST00000538492 LCE2BO14633 110 aa9.76□□□□□ -0.85
RAB40C-204ENST00000538492 USH2AO75445 5202 aa9.72□□□□□ -0.85
RAB40C-204ENST00000538492 PRO2289Q9P1D8 64 aa9.71□□□□□ -0.85
RAB40C-204ENST00000538492 LCE2AQ5TA79 106 aaPredicted RBP9.7□□□□□ -0.86
RAB40C-204ENST00000538492 KRTAP12-3P60328 96 aa9.65□□□□□ -0.86
RAB40C-204ENST00000538492 KMT2DO14686 5537 aa9.45□□□□□ -0.9
RAB40C-204ENST00000538492 KRTAP19-5Q3LI72 72 aa9.34□□□□□ -0.91
RAB40C-204ENST00000538492 A0A0A0MQY5 61 aa9.33□□□□□ -0.92
RAB40C-204ENST00000538492 KRTAP4-8A0A0G2JLE6 195 aa9.28□□□□□ -0.92
RAB40C-204ENST00000538492 KRTAP4-8Q9BYQ9 185 aa9.28□□□□□ -0.92
RAB40C-204ENST00000538492 LCE3CQ5T5A8 94 aa9.07□□□□□ -0.96
RAB40C-204ENST00000538492 SSPOA2VEC9 5147 aa9.05□□□□□ -0.96
RAB40C-204ENST00000538492 KRTAP19-7Q3SYF9 63 aa8.98□□□□□ -0.97
RAB40C-204ENST00000538492 FSIP2Q5CZC0 6907 aa8.97□□□□□ -0.97
RAB40C-204ENST00000538492 KRTAP4-7Q9BYR0 210 aa8.79□□□□□ -1
RAB40C-204ENST00000538492 KRTAP19-6Q3LI70 58 aa8.78□□□□□ -1
RAB40C-204ENST00000538492 KRTAP9-6A8MVA2 160 aa8.75□□□□□ -1.01
RAB40C-204ENST00000538492 MT1EP04732 61 aa8.72□□□□□ -1.01
RAB40C-204ENST00000538492 MT1LQ93083 61 aa8.69□□□□□ -1.02
RAB40C-204ENST00000538492 KRTAP19-4Q3LI73 84 aa8.51□□□□□ -1.05
RAB40C-204ENST00000538492 FCGBPQ9Y6R7 5405 aaPredicted RBP8.48□□□□□ -1.05
RAB40C-204ENST00000538492 INE1O15225 51 aa8.46□□□□□ -1.05
RAB40C-204ENST00000538492 MUC12Q9UKN1 5478 aa8.39□□□□□ -1.07
RAB40C-204ENST00000538492 LCE2DQ5TA82 110 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms