RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 RYR3Q15413 4870 aa7.55□□□□□ -1.2
LIG1-203ENST00000536218 C10orf95Q9H7T3 257 aa7.51□□□□□ -1.21
LIG1-203ENST00000536218 LRP1Q07954 4544 aaKnown RBP7.51□□□□□ -1.21
LIG1-203ENST00000536218 TPRXLQ17RH7 258 aa7.51□□□□□ -1.21
LIG1-203ENST00000536218 COX6B2Q6YFQ2 88 aa7.49□□□□□ -1.21
LIG1-203ENST00000536218 RPS29P62273 56 aaKnown RBP7.49□□□□□ -1.21
LIG1-203ENST00000536218 Q5VSD8 79 aa7.49□□□□□ -1.21
LIG1-203ENST00000536218 A0A0D9SG42 100 aa7.48□□□□□ -1.21
LIG1-203ENST00000536218 HSPG2P98160 4391 aa7.44□□□□□ -1.22
LIG1-203ENST00000536218 PKHD1L1Q86WI1 4243 aa7.43□□□□□ -1.22
LIG1-203ENST00000536218 KIAA1109Q2LD37 5005 aa7.43□□□□□ -1.22
LIG1-203ENST00000536218 KRTAP15-1Q3LI76 137 aa7.42□□□□□ -1.22
LIG1-203ENST00000536218 KRTAP17-1Q9BYP8 105 aa7.41□□□□□ -1.22
LIG1-203ENST00000536218 RPL37P61927 97 aaKnown RBP7.4□□□□□ -1.22
LIG1-203ENST00000536218 KRTAP3-1Q9BYR8 98 aa7.4□□□□□ -1.22
LIG1-203ENST00000536218 RYR1P21817 5038 aa7.38□□□□□ -1.23
LIG1-203ENST00000536218 KRTAP10-8P60410 259 aa7.34□□□□□ -1.23
LIG1-203ENST00000536218 MYCBP2O75592 4640 aa7.33□□□□□ -1.24
LIG1-203ENST00000536218 TNXBP22105 4242 aa7.32□□□□□ -1.24
LIG1-203ENST00000536218 EPPK1P58107 5090 aaKnown RBP7.31□□□□□ -1.24
LIG1-203ENST00000536218 FAT3Q8TDW7 4589 aa7.3□□□□□ -1.24
LIG1-203ENST00000536218 KRTAP13-4Q3LI77 160 aa7.27□□□□□ -1.25
LIG1-203ENST00000536218 LUZP6Q538Z0 58 aa7.2□□□□□ -1.26
LIG1-203ENST00000536218 MT1HL1P0DM35 61 aa7.19□□□□□ -1.26
LIG1-203ENST00000536218 KRTAP10-6P60371 365 aaPredicted RBP7.17□□□□□ -1.26
LIG1-203ENST00000536218 S4R3F8 94 aa7.15□□□□□ -1.26
LIG1-203ENST00000536218 KRTAP4-5Q9BYR2 181 aa7.15□□□□□ -1.27
LIG1-203ENST00000536218 XP32Q5T750 250 aa7.14□□□□□ -1.27
LIG1-203ENST00000536218 KRTAP12-2P59991 146 aa7.1□□□□□ -1.27
LIG1-203ENST00000536218 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
LIG1-203ENST00000536218 ABCA13Q86UQ4 5058 aa7.03□□□□□ -1.28
LIG1-203ENST00000536218 LRP2P98164 4655 aa7.03□□□□□ -1.28
LIG1-203ENST00000536218 LPAP08519 4548 aa7□□□□□ -1.29
LIG1-203ENST00000536218 KRTAP3-3Q9BYR6 98 aa7□□□□□ -1.29
LIG1-203ENST00000536218 KRTAP12-1P59990 96 aa6.95□□□□□ -1.3
LIG1-203ENST00000536218 J3QL48 77 aa6.92□□□□□ -1.3
LIG1-203ENST00000536218 HERC2O95714 4834 aa6.9□□□□□ -1.3
LIG1-203ENST00000536218 PLAC4Q8WY50 150 aa6.89□□□□□ -1.31
LIG1-203ENST00000536218 BIRC6Q9NR09 4857 aa6.75□□□□□ -1.33
LIG1-203ENST00000536218 SEC61BP60468 96 aaKnown RBP6.71□□□□□ -1.34
LIG1-203ENST00000536218 M0QZ58 72 aa6.68□□□□□ -1.34
LIG1-203ENST00000536218 KRTAP4-1Q9BYQ7 146 aa6.67□□□□□ -1.34
LIG1-203ENST00000536218 MUC2Q02817 5179 aa6.65□□□□□ -1.34
LIG1-203ENST00000536218 HERC1Q15751 4861 aa6.62□□□□□ -1.35
LIG1-203ENST00000536218 PCLOQ9Y6V0 5065 aa6.6□□□□□ -1.35
LIG1-203ENST00000536218 MUC17Q685J3 4493 aa6.59□□□□□ -1.35
LIG1-203ENST00000536218 R4GN34 69 aa6.55□□□□□ -1.36
LIG1-203ENST00000536218 HMCN2Q8NDA2 5059 aa6.43□□□□□ -1.38
LIG1-203ENST00000536218 KRTAP19-2Q3LHN2 52 aa6.41□□□□□ -1.38
LIG1-203ENST00000536218 RNF213Q63HN8 5207 aa6.39□□□□□ -1.39
LIG1-203ENST00000536218 LORP23490 312 aaPredicted RBP6.39□□□□□ -1.39
LIG1-203ENST00000536218 PP632Q6XCG6 107 aa6.37□□□□□ -1.39
LIG1-203ENST00000536218 CAMK2N1Q7Z7J9 78 aa6.36□□□□□ -1.39
LIG1-203ENST00000536218 FAT4Q6V0I7 4981 aa6.32□□□□□ -1.4
LIG1-203ENST00000536218 UBR4Q5T4S7 5183 aa6.27□□□□□ -1.41
LIG1-203ENST00000536218 FLGP20930 4061 aaPredicted RBP6.27□□□□□ -1.41
LIG1-203ENST00000536218 M0R2T5 61 aa6.18□□□□□ -1.42
LIG1-203ENST00000536218 PRO2289Q9P1D8 64 aa6.18□□□□□ -1.42
LIG1-203ENST00000536218 LCE2CQ5TA81 110 aa6.16□□□□□ -1.42
LIG1-203ENST00000536218 SPRR5A0A1B0GTR4 108 aa6.1□□□□□ -1.43
LIG1-203ENST00000536218 TNP1P09430 55 aa6.08□□□□□ -1.44
LIG1-203ENST00000536218 MT1HP80294 61 aa6.04□□□□□ -1.44
LIG1-203ENST00000536218 KRTAP10-10P60014 251 aa5.95□□□□□ -1.46
LIG1-203ENST00000536218 INE1O15225 51 aa5.92□□□□□ -1.46
LIG1-203ENST00000536218 MT1FP04733 61 aa5.9□□□□□ -1.47
LIG1-203ENST00000536218 MT2AP02795 61 aa5.89□□□□□ -1.47
LIG1-203ENST00000536218 KRTAP19-1Q8IUB9 90 aa5.88□□□□□ -1.47
LIG1-203ENST00000536218 KRTAP9-8Q9BYQ0 159 aa5.85□□□□□ -1.47
LIG1-203ENST00000536218 KRTAP23-1A1A580 65 aa5.85□□□□□ -1.47
LIG1-203ENST00000536218 SPRR2GQ9BYE4 73 aa5.85□□□□□ -1.47
LIG1-203ENST00000536218 LCE3AQ5TA76 89 aa5.7□□□□□ -1.5
LIG1-203ENST00000536218 FSIP2Q5CZC0 6907 aa5.68□□□□□ -1.5
LIG1-203ENST00000536218 USH2AO75445 5202 aa5.67□□□□□ -1.5
LIG1-203ENST00000536218 MT1BP07438 61 aa5.61□□□□□ -1.51
LIG1-203ENST00000536218 KRTAP19-8Q3LI54 63 aa5.61□□□□□ -1.51
LIG1-203ENST00000536218 KRTAP9-3Q9BYQ3 159 aa5.61□□□□□ -1.51
LIG1-203ENST00000536218 KRTAP10-5P60370 271 aa5.51□□□□□ -1.53
LIG1-203ENST00000536218 MT1XP80297 61 aa5.51□□□□□ -1.53
LIG1-203ENST00000536218 LCE2AQ5TA79 106 aaPredicted RBP5.49□□□□□ -1.53
LIG1-203ENST00000536218 LCE2BO14633 110 aa5.47□□□□□ -1.53
LIG1-203ENST00000536218 KRTAP8-1Q8IUC2 63 aa5.41□□□□□ -1.54
LIG1-203ENST00000536218 KMT2DO14686 5537 aa5.39□□□□□ -1.55
LIG1-203ENST00000536218 KRTAP10-7P60409 375 aaPredicted RBP5.39□□□□□ -1.55
LIG1-203ENST00000536218 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
LIG1-203ENST00000536218 KRTAP10-12P60413 245 aa5.35□□□□□ -1.55
LIG1-203ENST00000536218 KRTAP4-8A0A0G2JLE6 195 aa5.17□□□□□ -1.58
LIG1-203ENST00000536218 KRTAP4-8Q9BYQ9 185 aa5.17□□□□□ -1.58
LIG1-203ENST00000536218 SSPOA2VEC9 5147 aa5.12□□□□□ -1.59
LIG1-203ENST00000536218 KRTAP19-5Q3LI72 72 aa5.12□□□□□ -1.59
LIG1-203ENST00000536218 LCE3CQ5T5A8 94 aa5.05□□□□□ -1.6
LIG1-203ENST00000536218 LCE2DQ5TA82 110 aaPredicted RBP4.98□□□□□ -1.61
LIG1-203ENST00000536218 KRTAP9-6A8MVA2 160 aa4.97□□□□□ -1.61
LIG1-203ENST00000536218 KRTAP19-6Q3LI70 58 aa4.91□□□□□ -1.62
LIG1-203ENST00000536218 KRTAP19-7Q3SYF9 63 aa4.91□□□□□ -1.62
LIG1-203ENST00000536218 DSTQ03001 7570 aaKnown RBP4.89□□□□□ -1.63
LIG1-203ENST00000536218 KRTAP2-3P0C7H8 128 aa4.88□□□□□ -1.63
LIG1-203ENST00000536218 KRTAP2-4Q9BYR9 128 aa4.88□□□□□ -1.63
LIG1-203ENST00000536218 KRTAP2-1Q9BYU5 128 aa4.88□□□□□ -1.63
LIG1-203ENST00000536218 KRTAP4-7Q9BYR0 210 aa4.85□□□□□ -1.63
LIG1-203ENST00000536218 FCGBPQ9Y6R7 5405 aaPredicted RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 286.6 ms